Pregenerated sensors for VPS11-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000272186

Ensembl transcript IDs: ENST00000607709.1, ENST00000628862.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AACAGTCCTGTGAGGTCAAAACGTCATTCACTTACGCACGGCGGGTaGCAGTTCACAAGGCACATGACATCCCTCATCTTGATCTCCCGG	+
Preference number: 5 (lower is better) Translates to: NSPVRSKRHSLTHGG*QFTRHMTSLILISR Trigger: CCGGGAGATCAAGATGAGGGATGTCATGTGCCTTGTGAACTGTCACCCGCCGTGCGTAAGTGAATGACGTTTTGACCTCACAGGACTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000607709.1 ENST00000628862.1
CDS GCA 72 bp	AGCGAAGTTACAGTCACATCCGGCAAACTCGCACACTaGAGATCTAGGACTACCCCGCGCGGCCCCGCCCAC	+
Preference number: 6 (lower is better) Translates to: SEVTVTSGKLAH*RSRTTPRGPAH Trigger: GTGGGCGGGGCCGCGCGGGGTAGTCCTAGATCTGCAGTGTGCGAGTTTGCCGGATGTGACTGTAACTTCGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000607709.1 ENST00000628862.1
CDS TCA 72 bp	GTGAGGTCAAAACGTCATTCACTTACGCACGGCGGGTaGCAGTTCACAAGGCACATGACATCCCTCATCTTG	+
Preference number: 6 (lower is better) Translates to: VRSKRHSLTHGG*QFTRHMTSLIL Trigger: CAAGATGAGGGATGTCATGTGCCTTGTGAACTGTCACCCGCCGTGCGTAAGTGAATGACGTTTTGACCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000607709.1 ENST00000628862.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu