Pregenerated sensors for VDAC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000213585Ensembl transcript IDs: ENST00000265333.8, ENST00000466080.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGGATCTTTCCAGATAACCGCTCCCTGATACCATGGCAGAGTTCCTaGGGGGAGAGTGCACAGCACTGCAAAAAGGCAGTGCTCTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: RIFPDNRSLIPWQSS*GESAQHCKKAVLLQ Trigger: CTGCAAGAGCACTGCCTTTTTGCAGTGCTGTGCACTCTCCCCCCAGGAACTCTGCCATGGTATCAGGGAGCGGTTATCTGGAAAGATCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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| CDS GCA 90 bp | TCTCCAGAGGATAGGAACCATGTGTGCCCAGTCACTTGTGTGCACTaGACACCCAGCACAGGTCTGCACTTGGTAGATCCTCCCTCTAAT | + |
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Preference number: 5 (lower is better) Translates to: SPEDRNHVCPVTCVH*TPSTGLHLVDPPSN Trigger: ATTAGAGGGAGGATCTACCAAGTGCAGACCTGTGCTGGGTGTGCAGTGCACACAAGTGACTGGGCACACATGGTTCCTATCCTCTGGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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| CDS CCA 90 bp | TTATACTGCATGGCCTGGAGACCTCTGCAAAGCTCCCTAAGGTCATaGGAAGGAAATCACCTACAAATTCCAAAGTGTGCTATCCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: LYCMAWRPLQSSLRS*EGNHLQIPKCAIPG Trigger: CCCTGGGATAGCACACTTTGGAATTTGTAGGTGATTTCCTTCCCATGACCTTAGGGAGCTTTGCAGAGGTCTCCAGGCCATGCAGTATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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| CDS GCA 72 bp | GGGTGGCACAGCCATCTTCTGCCTTCCGGGCCCCGCTaGCCCGGCAGCAGACACAGGAGCCTGCGGGCGTGT | + |
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Preference number: 6 (lower is better) Translates to: GWHSHLLPSGPR*PGSRHRSLRAC Trigger: ACACGCCCGCAGGCTCCTGTGTCTGCTGCCGGGGCAGCGGGGCCCGGAAGGCAGAAGATGGCTGTGCCACCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000265333.8 |
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| CDS CCA 72 bp | CCAGATAACCGCTCCCTGATACCATGGCAGAGTTCCTaGGGGGAGAGTGCACAGCACTGCAAAAAGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PDNRSLIPWQSS*GESAQHCKKAV Trigger: CACTGCCTTTTTGCAGTGCTGTGCACTCTCCCCCCAGGAACTCTGCCATGGTATCAGGGAGCGGTTATCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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| CDS CCA 72 bp | CAGCAGGCAAAGTCCCAGGCAGCAAATTCAAGCATGTaGGCACATCCTCCAGCCTCTCATCCTATCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: QQAKSQAANSSM*AHPPASHPIPG Trigger: TCCTGGGATAGGATGAGAGGCTGGAGGATGTGCCCACATGCTTGAATTTGCTGCCTGGGACTTTGCCTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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| CDS GCA 72 bp | GATAGGAACCATGTGTGCCCAGTCACTTGTGTGCACTaGACACCCAGCACAGGTCTGCACTTGGTAGATCCT | + |
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Preference number: 6 (lower is better) Translates to: DRNHVCPVTCVH*TPSTGLHLVDP Trigger: AGGATCTACCAAGTGCAGACCTGTGCTGGGTGTGCAGTGCACACAAGTGACTGGGCACACATGGTTCCTATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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| CDS CAA 90 bp | TGCCCAGTCACTTGTGTGCACTGCACACCCAGCACAGGTCTGCACTaGGTAGATCCTCCCTCTAATAAATATCCAGTGTTAGGTGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: CPVTCVHCTPSTGLH*VDPPSNKYPVLGEK Trigger: CTTCTCACCTAACACTGGATATTTATTAGAGGGAGGATCTACCAAGTGCAGACCTGTGCTGGGTGTGCAGTGCACACAAGTGACTGGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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| CDS CCA 72 bp | ATGGCCTGGAGACCTCTGCAAAGCTCCCTAAGGTCATaGGAAGGAAATCACCTACAAATTCCAAAGTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: MAWRPLQSSLRS*EGNHLQIPKCA Trigger: AGCACACTTTGGAATTTGTAGGTGATTTCCTTCCCATGACCTTAGGGAGCTTTGCAGAGGTCTCCAGGCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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| CDS CAA 72 bp | ACTTGTGTGCACTGCACACCCAGCACAGGTCTGCACTaGGTAGATCCTCCCTCTAATAAATATCCAGTGTTA | + |
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Preference number: 6 (lower is better) Translates to: TCVHCTPSTGLH*VDPPSNKYPVL Trigger: TAACACTGGATATTTATTAGAGGGAGGATCTACCAAGTGCAGACCTGTGCTGGGTGTGCAGTGCACACAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466080.1 |
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