Pregenerated sensors for USP1 (Homo sapiens)
Ensembl gene IDs: ENSG00000162607Ensembl transcript IDs: ENST00000339950.5, ENST00000371146.5, ENST00000442679.5, ENST00000452143.5
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AACACAAAAGACTGGTGTAAATCCAAGTGTTTAAATGCCTCCGTTTaGGATAATTTAATTAAGAACCGATACAAGTTTGTTCCCAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: NTKDWCKSKCLNASV*DNLIKNRYKFVPRS Trigger: GCTTCTGGGAACAAACTTGTATCGGTTCTTAATTAAATTATCCAAAACGGAGGCATTTAAACACTTGGATTTACACCAGTCTTTTGTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS GCA 90 bp | TCCGCTCCCAAGAGCGGGAACCCCGACCGCCGCTCGCTCCCGTCTTaGACCAACACCAACTACATCCCGGGAGCGGCGCCCATCTGCGCC | + |
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Preference number: 5 (lower is better) Translates to: SAPKSGNPDRRSLPS*TNTNYIPGAAPICA Trigger: GGCGCAGATGGGCGCCGCTCCCGGGATGTAGTTGGTGTTGGTGCAAGACGGGAGCGAGCGGCGGTCGGGGTTCCCGCTCTTGGGAGCGGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339950.5 |
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| CDS TCA 90 bp | GAGAGCCAGGAGCGCAACAAGCAGCGGCCCCGCTCGCCGAACGCCTaGACCGCTAGGGTCTTTAGCACTCCGCCACCGAGGGGAACTTGG | + |
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Preference number: 5 (lower is better) Translates to: ESQERNKQRPRSPNA*TARVFSTPPPRGTW Trigger: CCAAGTTCCCCTCGGTGGCGGAGTGCTAAAGACCCTAGCGGTTCAGGCGTTCGGCGAGCGGGGCCGCTGCTTGTTGCGCTCCTGGCTCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339950.5 |
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| CDS GCA 90 bp | TCCAGCCAATCATTGTTCGACATACGGAGTGTTCCTCAGGCGCGGTaGCCCTCCTTCCGCTCTCATTGGCGCTCGAGTGCGCGCTTTCGC | + |
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Preference number: 5 (lower is better) Translates to: SSQSLFDIRSVPQAR*PSFRSHWRSSARFR Trigger: GCGAAAGCGCGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGCGCCTGAGGAACACTCCGTATGTCGAACAATGATTGGCTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000371146.5 ENST00000452143.5 |
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| CDS CCA 90 bp | ATACGGAGTGTTCCTCAGGCGCGGTGCCCCTCCTTCCGCTCTCATTaGCGCTCGAGTGCGCGCTTTCGCTGCCGACTGTTAAAATCTTGT | + |
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Preference number: 5 (lower is better) Translates to: IRSVPQARCPSFRSH*RSSARFRCRLLKSC Trigger: ACAAGATTTTAACAGTCGGCAGCGAAAGCGCGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGCGCCTGAGGAACACTCCGTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000371146.5 ENST00000452143.5 |
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| CDS CCA 90 bp | ATATGGAGTGTTCCTCAGGCGCGGTGCCCCTCCTTCCGCTCTCATTaGCGCTCGAGTGCGCGCTTTCGCTGCCGACTGTTAAAATCTTGT | + |
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Preference number: 5 (lower is better) Translates to: IWSVPQARCPSFRSH*RSSARFRCRLLKSC Trigger: ACAAGATTTTAACAGTCGGCAGCGAAAGCGCGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGCGCCTGAGGAACACTCCATAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000442679.5 |
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| CDS TCA 90 bp | TACATAGGGTTGAGTTCCCTCAGTGTGTTAAGCAGTCGCCTTGGCTaGGTGGCAAGTTCATCAGTATATTTCTCTGGATTTAAGAGAAAA | + |
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Preference number: 5 (lower is better) Translates to: YIGLSSLSVLSSRLG*VASSSVYFSGFKRK Trigger: TTTTCTCTTAAATCCAGAGAAATATACTGATGAACTTGCCACTCAGCCAAGGCGACTGCTTAACACACTGAGGGAACTCAACCCTATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CCA 90 bp | ATAATTCTCAACCACACCCCTTGCTTCCTCCTCATTCAATGGTTCTaGCTTACCTATTTCACACATTTGGTCAACCACAAAATTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: IILNHTPCFLLIQWF*LTYFTHLVNHKISF Trigger: AAAGGAAATTTTGTGGTTGACCAAATGTGTGAAATAGGTAAGCCAGAACCATTGAATGAGGAGGAAGCAAGGGGTGTGGTTGAGAATTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CCA 90 bp | TTAATGCCTGTTTGGTCACTGGATTCCTTGTTTCTATCAGATTCATaGGTCCCAGTAGTATCACTAGTCTCAGAATTTCTATTTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: LMPVWSLDSLFLSDS*VPVVSLVSEFLFSA Trigger: TGCTGAAAATAGAAATTCTGAGACTAGTGATACTACTGGGACCCATGAATCTGATAGAAACAAGGAATCCAGTGACCAAACAGGCATTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CCA 90 bp | GCAAGTTCATCAGTATATTTCTCTGGATTTAAGAGAAAACTAGCCTaGAGCTGTTCAACCGAAATGATTAAGGACTGTAAACTGCATATC | + |
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Preference number: 5 (lower is better) Translates to: ASSSVYFSGFKRKLA*SCSTEMIKDCKLHI Trigger: GATATGCAGTTTACAGTCCTTAATCATTTCGGTTGAACAGCTCCAGGCTAGTTTTCTCTTAAATCCAGAGAAATATACTGATGAACTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000339950.5 ENST00000371146.5 ENST00000452143.5 |
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| CDS CCA 90 bp | ACGTATGAAATTTTGTTCTCAAATCCACTAATATTAATGCCTGTTTaGTCACTGGATTCCTTGTTTCTATCAGATTCATGGGTCCCAGTA | + |
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Preference number: 5 (lower is better) Translates to: TYEILFSNPLILMPV*SLDSLFLSDSWVPV Trigger: TACTGGGACCCATGAATCTGATAGAAACAAGGAATCCAGTGACCAAACAGGCATTAATATTAGTGGATTTGAGAACAAAATTTCATACGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CAA 90 bp | ATCCGCTCCCAAGAGCGGGAACCCCGACCGCCGCTCGCTCCCGTCTaGCACCAACACCAACTACATCCCGGGAGCGGCGCCCATCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: IRSQEREPRPPLAPV*HQHQLHPGSGAHLR Trigger: GCGCAGATGGGCGCCGCTCCCGGGATGTAGTTGGTGTTGGTGCAAGACGGGAGCGAGCGGCGGTCGGGGTTCCCGCTCTTGGGAGCGGAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339950.5 |
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| CDS GCA 72 bp | AAGAGCGGGAACCCCGACCGCCGCTCGCTCCCGTCTTaGACCAACACCAACTACATCCCGGGAGCGGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: KSGNPDRRSLPS*TNTNYIPGAAP Trigger: GGGCGCCGCTCCCGGGATGTAGTTGGTGTTGGTGCAAGACGGGAGCGAGCGGCGGTCGGGGTTCCCGCTCTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339950.5 |
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| CDS TCA 72 bp | GAGCGCAACAAGCAGCGGCCCCGCTCGCCGAACGCCTaGACCGCTAGGGTCTTTAGCACTCCGCCACCGAGG | + |
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Preference number: 6 (lower is better) Translates to: ERNKQRPRSPNA*TARVFSTPPPR Trigger: CCTCGGTGGCGGAGTGCTAAAGACCCTAGCGGTTCAGGCGTTCGGCGAGCGGGGCCGCTGCTTGTTGCGCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339950.5 |
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| CDS CCA 72 bp | GTTCCTCAGGCGCGGTGCCCCTCCTTCCGCTCTCATTaGCGCTCGAGTGCGCGCTTTCGCTGCCGACTGTTA | + |
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Preference number: 6 (lower is better) Translates to: VPQARCPSFRSH*RSSARFRCRLL Trigger: TAACAGTCGGCAGCGAAAGCGCGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGCGCCTGAGGAAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000371146.5 ENST00000442679.5 ENST00000452143.5 |
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| CDS CAA 72 bp | TGTTCCTCAGGCGCGGTGCCCCTCCTTCCGCTCTCATaGGCGCTCGAGTGCGCGCTTTCGCTGCCGACTGTT | + |
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Preference number: 6 (lower is better) Translates to: CSSGAVPLLPLS*ALECALSLPTV Trigger: AACAGTCGGCAGCGAAAGCGCGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGCGCCTGAGGAACA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000371146.5 ENST00000442679.5 ENST00000452143.5 |
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| CDS GCA 72 bp | TCATTGTTCGACATACGGAGTGTTCCTCAGGCGCGGTaGCCCTCCTTCCGCTCTCATTGGCGCTCGAGTGCG | + |
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Preference number: 6 (lower is better) Translates to: SLFDIRSVPQAR*PSFRSHWRSSA Trigger: CGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGCGCCTGAGGAACACTCCGTATGTCGAACAATGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000371146.5 ENST00000452143.5 |
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| CDS CAA 90 bp | CATACGGAGTGTTCCTCAGGCGCGGTGCCCCTCCTTCCGCTCTCATaGGCGCTCGAGTGCGCGCTTTCGCTGCCGACTGTTAAAATCTTG | + |
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Preference number: 6 (lower is better) Translates to: HTECSSGAVPLLPLS*ALECALSLPTVKIL Trigger: CAAGATTTTAACAGTCGGCAGCGAAAGCGCGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGCGCCTGAGGAACACTCCGTATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000371146.5 ENST00000452143.5 |
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| CDS CAA 90 bp | GAGTGCGCGCTTTCGCTGCCGACTGTTAAAATCTTGTTTGGCGTTTaGTTAATCCTCGACGGTGGGACGCCGCGGAGGGTGCGGCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: ECALSLPTVKILFGV*LILDGGTPRRVRLP Trigger: CGGAAGCCGCACCCTCCGCGGCGTCCCACCGTCGAGGATTAACAAAACGCCAAACAAGATTTTAACAGTCGGCAGCGAAAGCGCGCACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000371146.5 ENST00000442679.5 ENST00000452143.5 |
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| CDS CAA 90 bp | TATATGGAGTGTTCCTCAGGCGCGGTGCCCCTCCTTCCGCTCTCATaGGCGCTCGAGTGCGCGCTTTCGCTGCCGACTGTTAAAATCTTG | + |
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Preference number: 6 (lower is better) Translates to: YMECSSGAVPLLPLS*ALECALSLPTVKIL Trigger: CAAGATTTTAACAGTCGGCAGCGAAAGCGCGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGCGCCTGAGGAACACTCCATATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000442679.5 |
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| CDS GCA 72 bp | GCGGTGCCCCTCCTTCCGCTCTCATTGGCGCTCGAGTaGGCGCTTTCGCTGCCGACTGTTAAAATCTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: AVPLLPLSLALE*ALSLPTVKILF Trigger: AAACAAGATTTTAACAGTCGGCAGCGAAAGCGCGCACTCGAGCGCCAATGAGAGCGGAAGGAGGGGCACCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000371146.5 ENST00000442679.5 ENST00000452143.5 |
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| CDS CAA 90 bp | TCATTGGCGCTCGAGTGCGCGCTTTCGCTGCCGACTGTTAAAATCTaGTTTGGCGTTTTGTTAATCCTCGACGGTGGGACGCCGCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SLALECALSLPTVKI*FGVLLILDGGTPRR Trigger: CCTCCGCGGCGTCCCACCGTCGAGGATTAACAAAACGCCAAACAAGATTTTAACAGTCGGCAGCGAAAGCGCGCACTCGAGCGCCAATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000371146.5 ENST00000442679.5 ENST00000452143.5 |
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| CDS CAA 72 bp | CTTTCGCTGCCGACTGTTAAAATCTTGTTTGGCGTTTaGTTAATCCTCGACGGTGGGACGCCGCGGAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: LSLPTVKILFGV*LILDGGTPRRV Trigger: CACCCTCCGCGGCGTCCCACCGTCGAGGATTAACAAAACGCCAAACAAGATTTTAACAGTCGGCAGCGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000371146.5 ENST00000442679.5 ENST00000452143.5 |
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| CDS CAA 72 bp | CTCGAGTGCGCGCTTTCGCTGCCGACTGTTAAAATCTaGTTTGGCGTTTTGTTAATCCTCGACGGTGGGACG | + |
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Preference number: 6 (lower is better) Translates to: LECALSLPTVKI*FGVLLILDGGT Trigger: CGTCCCACCGTCGAGGATTAACAAAACGCCAAACAAGATTTTAACAGTCGGCAGCGAAAGCGCGCACTCGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000371146.5 ENST00000442679.5 ENST00000452143.5 |
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| CDS CCA 72 bp | AGGGTTGAGTTCCCTCAGTGTGTTAAGCAGTCGCCTTaGCTGAGTGGCAAGTTCATCAGTATATTTCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: RVEFPQCVKQSP*LSGKFISIFLW Trigger: CCAGAGAAATATACTGATGAACTTGCCACTCAGCCAAGGCGACTGCTTAACACACTGAGGGAACTCAACCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS TCA 72 bp | TTGAGTTCCCTCAGTGTGTTAAGCAGTCGCCTTGGCTaGGTGGCAAGTTCATCAGTATATTTCTCTGGATTT | + |
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Preference number: 6 (lower is better) Translates to: LSSLSVLSSRLG*VASSSVYFSGF Trigger: AAATCCAGAGAAATATACTGATGAACTTGCCACTCAGCCAAGGCGACTGCTTAACACACTGAGGGAACTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CCA 72 bp | AACCACACCCCTTGCTTCCTCCTCATTCAATGGTTCTaGCTTACCTATTTCACACATTTGGTCAACCACAAA | + |
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Preference number: 6 (lower is better) Translates to: NHTPCFLLIQWF*LTYFTHLVNHK Trigger: TTTGTGGTTGACCAAATGTGTGAAATAGGTAAGCCAGAACCATTGAATGAGGAGGAAGCAAGGGGTGTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS GCA 72 bp | CACTTCTTCATCATTATAATTCTCAACCACACCCCTTaGTTCCTCCTCATTCAATGGTTCTGGCTTACCTAT | + |
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Preference number: 6 (lower is better) Translates to: HFFIIIILNHTP*FLLIQWFWLTY Trigger: ATAGGTAAGCCAGAACCATTGAATGAGGAGGAAGCAAGGGGTGTGGTTGAGAATTATAATGATGAAGAAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CCA 72 bp | ACTCTCCTCTACTTTGGAAAGCTCATCTTCTTGTACTaGCACACTGATGTCTTGAAAATCTTCTCTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: TLLYFGKLIFLY*HTDVLKIFSSF Trigger: GAAAGAAGAGAAGATTTTCAAGACATCAGTGTGCCAGTACAAGAAGATGAGCTTTCCAAAGTAGAGGAGAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CCA 72 bp | GTTTGGTCACTGGATTCCTTGTTTCTATCAGATTCATaGGTCCCAGTAGTATCACTAGTCTCAGAATTTCTA | + |
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Preference number: 6 (lower is better) Translates to: VWSLDSLFLSDS*VPVVSLVSEFL Trigger: TAGAAATTCTGAGACTAGTGATACTACTGGGACCCATGAATCTGATAGAAACAAGGAATCCAGTGACCAAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CAA 72 bp | TTCAGAACTCTCCTCTACTTTGGAAAGCTCATCTTCTaGTACTGGCACACTGATGTCTTGAAAATCTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: FRTLLYFGKLIF*YWHTDVLKIFS Trigger: AGAGAAGATTTTCAAGACATCAGTGTGCCAGTACAAGAAGATGAGCTTTCCAAAGTAGAGGAGAGTTCTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CCA 72 bp | TCACTTGTAGCTTTTCTTTTTGATCTAGTTTGTCTCTaGTTCTCTTCCAATGACTGGTGTTCCTTGGATAAT | + |
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Preference number: 6 (lower is better) Translates to: SLVAFLFDLVCL*FSSNDWCSLDN Trigger: ATTATCCAAGGAACACCAGTCATTGGAAGAGAACCAGAGACAAACTAGATCAAAAAGAAAAGCTACAAGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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| CDS CCA 72 bp | TCAGTATATTTCTCTGGATTTAAGAGAAAACTAGCCTaGAGCTGTTCAACCGAAATGATTAAGGACTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: SVYFSGFKRKLA*SCSTEMIKDCK Trigger: TTTACAGTCCTTAATCATTTCGGTTGAACAGCTCCAGGCTAGTTTTCTCTTAAATCCAGAGAAATATACTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000339950.5 ENST00000371146.5 ENST00000452143.5 |
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| CDS TCA 72 bp | TCAAACTCCAAACCACTAGCAGCAAAGCACTTCAAATaGATAGTTATAACTTCAGGCATTTTGTCAAACAAA | + |
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Preference number: 6 (lower is better) Translates to: SNSKPLAAKHFK*IVITSGILSNK Trigger: TTTGTTTGACAAAATGCCTGAAGTTATAACTATTCATTTGAAGTGCTTTGCTGCTAGTGGTTTGGAGTTTGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339950.5 ENST00000371146.5 |
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