Pregenerated sensors for UPF3A (Homo sapiens)
Ensembl gene IDs: ENSG00000169062Ensembl transcript IDs: ENST00000351487.5, ENST00000375299.8, ENST00000479712.1, ENST00000480362.5, ENST00000481131.5, ENST00000484246.5, ENST00000492270.1, ENST00000618700.4, ENST00000619079.1
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTCACACGACTCCCATATAGGAGAAATCAGGGTAAGGAACGTAAGGCAACGAGAACCGCCGCCGAGCTCTaGGTTCCGCCCTCTCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: LTRLPYRRNQGKERKATRTAAEL*VPPSLP Trigger: AGGAAGAGAGGGCGGAACCCAGAGCTCGGCGGCGGT...TCTCGTTGCCTTACGTTCCTTACCCTGATTTCTCCTATATGGGAGTCGTGTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR GCA 90 bp | CAACGAGACGGCCACCGCCGCCGAGCTCTGGGTTCCGCCCTCTCTTCCTCCCCTGGCGTCTCAGCCTCCTaGTGCTGCGAGTCGCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QRDGHRRRALGSALSSSPGVSAS*CCESRW Trigger: CCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCC...AGGGGAGGAAGAGAGGGCGGAACCCAGAGCTCGGCGGCGGTGGCCGTCTCGTTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR GCA 90 bp | AGGCAACGAGACGGCCACCGCCGCCGAGCTCTGGGTTCCGCCCTCTCTTCCTCCTCAGCCTCCTGCTGCTaGGAGTCGCGGTGGAACTGC | + |
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Preference number: 4 (lower is better) Translates to: RQRDGHRRRALGSALSSSSASCC*ESRWNC Trigger: GCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGA...GGAGGAAGAGAGGGCGGAACCCAGAGCTCGGCGGCGGTGGCCGTCTCGTTGCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR GCA 90 bp | GGTAAGGAACGTAAGGCAACGAGACGGCCACCGCCGCCGAGCTCTGGGTTCCGCCCTTTTCCGAGCGCATaGCGCACTCTCCGCCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GKERKATRRPPPPSSGFRPFPSA*RTLRRA Trigger: GGCTCGGCGGAGAGTGCGGCATGCGCTCGGAAAAGG...GCGGAACCCAGAGCTCGGCGGCGGTGGCCGTCTCGTTGCCTTACGTTCCTTACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR CCA 90 bp | GGTAAGGAACGTAAGGCAACGAGACGGCCACCGCCGCCGAGCTCTGGGTTCCGCACCGCCGCCGAGCTCTaGGTTCCGCCCTCTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: GKERKATRRPPPPSSGFRTAAEL*VPPSLP Trigger: AGGAAGAGAGGGCGGAACCCAGAGCTCGGCGGCGGT...GCGGAACCCAGAGCTCGGCGGCGGTGGCCGTCTCGTTGCCTTACGTTCCTTACC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR CCA 90 bp | GTAAGGCAACGAGACGGCCACCGCCGCCGAGCTCTGGGTTCCGCCCTCTCTTCCTGCTGCGAGTCGCGGTaGAACTGCACTTCTAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: VRQRDGHRRRALGSALSSCCESR*NCTSRA Trigger: GGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCA...GGAAGAGAGGGCGGAACCCAGAGCTCGGCGGCGGTGGCCGTCTCGTTGCCTTAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR GCA 90 bp | AGAAATCAGGGTAAGGAACGTAAGGCAACGAGACGGCCACCGCCGCCGAGCTCTGTCTCAGCCTCCTGCTaGTGCGAGTCGCGGTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: RNQGKERKATRRPPPPSSVSASC*CESRWN Trigger: GTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGAC...AGAGCTCGGCGGCGGTGGCCGTCTCGTTGCCTTACGTTCCTTACCCTGATTTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR TCA 90 bp | AAAAGCTCACACGACTCCCATATAGGAGAAATCAGGGTAAGGAACGTAAGGCAAGAGGCAGGCGGCGGATaGCCACCTTGCTCAGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: KSSHDSHIGEIRVRNVRQEAGGG*PPCSGP Trigger: CGGCCCTGAGCAAGGTGGTCATCCGCCGCCTGCCTC...TTGCCTTACGTTCCTTACCCTGATTTCTCCTATATGGGAGTCGTGTGAGCTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR GCA 90 bp | CTCACACGACTCCCATATAGGAGAAATCAGGGTAAGGAACGTAAGGCAACGAGAGAGTCGCGGTGGAACTaGACTTCTAGGGCCGACAGC | + |
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Preference number: 4 (lower is better) Translates to: LTRLPYRRNQGKERKATRESRWN*TSRADS Trigger: GCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTC...TCTCGTTGCCTTACGTTCCTTACCCTGATTTCTCCTATATGGGAGTCGTGTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS-3UTR CCA 90 bp | TGTATTTATTCAAAAAGCTCACACGACTCCCATATAGGAGAAATCAGGGTAAGGACCGGAGGACGAAGTTaGCGGCGTCTCAGCCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: CIYSKSSHDSHIGEIRVRTGGRS*RRLSLL Trigger: CAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGT...CCTTACCCTGATTTCTCCTATATGGGAGTCGTGTGAGCTTTTTGAATAAATACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS GCA 90 bp | GTTGGCGGCGTCTCAGCCTCCTGCTGCTGCGAGTCGCGGTGGAACTaGACTTCTAGGGCCGACAGCTTCTCCCTCCCGCTCGGGCCCCGC | + |
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Preference number: 5 (lower is better) Translates to: VGGVSASCCCESRWN*TSRADSFSLPLGPR Trigger: GCGGGGCCCGAGCGGGAGGGAGAAGCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS GCA 90 bp | CCGCCCCCGCAACCGGAGGACGAAGTTGGCGGCGTCTCAGCCTCCTaGTGCTGCGAGTCGCGGTGGAACTGCACTTCTAGGGCCGACAGC | + |
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Preference number: 5 (lower is better) Translates to: PPPQPEDEVGGVSAS*CCESRWNCTSRADS Trigger: GCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGTTGCGGGGGCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS-3UTR CAA 90 bp | CAACGAGACGGCCACCGCCGCCGAGCTCTGGGTTCCGCCCTCTCTTCCTCCCCTAACCGGAGGACGAAGTaGGCGGCGTCTCAGCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: QRDGHRRRALGSALSSSPNRRTK*AASQPP Trigger: AGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGTT...AGGGGAGGAAGAGAGGGCGGAACCCAGAGCTCGGCGGCGGTGGCCGTCTCGTTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS GCA 90 bp | CCCCCGCAACCGGAGGACGAAGTTGGCGGCGTCTCAGCCTCCTGCTaGTGCGAGTCGCGGTGGAACTGCACTTCTAGGGCCGACAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: PPQPEDEVGGVSASC*CESRWNCTSRADSF Trigger: GAAGCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGTTGCGGGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS CCA 90 bp | GACGAAGTTGGCGGCGTCTCAGCCTCCTGCTGCTGCGAGTCGCGGTaGAACTGCACTTCTAGGGCCGACAGCTTCTCCCTCCCGCTCGGG | + |
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Preference number: 5 (lower is better) Translates to: DEVGGVSASCCCESR*NCTSRADSFSLPLG Trigger: CCCGAGCGGGAGGGAGAAGCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS GCA 90 bp | CCGCAACCGGAGGACGAAGTTGGCGGCGTCTCAGCCTCCTGCTGCTaGGAGTCGCGGTGGAACTGCACTTCTAGGGCCGACAGCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: PQPEDEVGGVSASCC*ESRWNCTSRADSFS Trigger: GGAGAAGCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGTTGCGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS CCA 90 bp | GCATGGGGTGGAAGGCTGGATTTAAACTCGATTCTGTGCTCTGGCTaGGCTTATCCACAAGTTGGCCTGGCTCGGGGAGCCTGGCATTTG | + |
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Preference number: 5 (lower is better) Translates to: AWGGRLDLNSILCSG*AYPQVGLARGAWHL Trigger: CAAATGCCAGGCTCCCCGAGCCAGGCCAACTTGTGGATAAGCCCAGCCAGAGCACAGAATCGAGTTTAAATCCAGCCTTCCACCCCATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS TCA 90 bp | TTGGCCTGGCTCGGGGAGCCTGGCATTTGTGTTGAAGCAGCAAGATaGCCTCACCGCAAGCAAAACATCTCATTCCTATGGGCTCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: LAWLGEPGICVEAAR*PHRKQNISFLWALE Trigger: CTCAAGAGCCCATAGGAATGAGATGTTTTGCTTGCGGTGAGGTCATCTTGCTGCTTCAACACAAATGCCAGGCTCCCCGAGCCAGGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS TCA 90 bp | GCTTATCCACAAGTTGGCCTGGCTCGGGGAGCCTGGCATTTGTGTTaGAGCAGCAAGATGACCTCACCGCAAGCAAAACATCTCATTCCT | + |
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Preference number: 5 (lower is better) Translates to: AYPQVGLARGAWHLC*SSKMTSPQAKHLIP Trigger: AGGAATGAGATGTTTTGCTTGCGGTGAGGTCATCTTGCTGCTTCAACACAAATGCCAGGCTCCCCGAGCCAGGCCAACTTGTGGATAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CCA 90 bp | GGATTTAAACTCGATTCTGTGCTCTGGCTGGGCTTATCCACAAGTTaGCCTGGCTCGGGGAGCCTGGCATTTGTGTTGAAGCAGCAAGAT | + |
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Preference number: 5 (lower is better) Translates to: GFKLDSVLWLGLSTS*PGSGSLAFVLKQQD Trigger: ATCTTGCTGCTTCAACACAAATGCCAGGCTCCCCGAGCCAGGCCAACTTGTGGATAAGCCCAGCCAGAGCACAGAATCGAGTTTAAATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CCA 90 bp | GACGATGTCCAAGTCACCGCTCCACCCACAAGGCCTAGCACACAGTaGATACTCATTCAATGGCAGATGACATACTCCCTGATTCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: DDVQVTAPPTRPSTQ*ILIQWQMTYSLIPK Trigger: CTTTGGAATCAGGGAGTATGTCATCTGCCATTGAATGAGTATCCACTGTGTGCTAGGCCTTGTGGGTGGAGCGGTGACTTGGACATCGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS-3UTR CAA 90 bp | ATTTATTCAAAAAGCTCACACGACTCCCATATAGGAGAAATCAGGGTAAGGAACCGGCGGATGACCACCTaGCTCAGGGCCGTCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: IYSKSSHDSHIGEIRVRNRRMTT*LRAVLF Trigger: GAAGAGGACGGCCCTGAGCAAGGTGGTCATCCGCCG...GTTCCTTACCCTGATTTCTCCTATATGGGAGTCGTGTGAGCTTTTTGAATAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000492270.1 |
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| CDS CCA 90 bp | TGCTACTGGGAAGTAACTATTTCTAAAGTACACCACTTGTGGGCATaGGGTGGAAGGCTGGATTTAAACTCGATTCTGTGCTCTGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: CYWEVTISKVHHLWA*GGRLDLNSILCSGW Trigger: CCAGCCAGAGCACAGAATCGAGTTTAAATCCAGCCTTCCACCCCATGCCCACAAGTGGTGTACTTTAGAAATAGTTACTTCCCAGTAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CCA 90 bp | TGTTGGTGCTACTGGGAAGTAACTATTTCTAAAGTACACCACTTGTaGGCATGGGGTGGAAGGCTGGATTTAAACTCGATTCTGTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: CWCYWEVTISKVHHL*AWGGRLDLNSILCS Trigger: AGAGCACAGAATCGAGTTTAAATCCAGCCTTCCACCCCATGCCCACAAGTGGTGTACTTTAGAAATAGTTACTTCCCAGTAGCACCAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS TCA 90 bp | TGCTGTCTCCGCAGGCAAAGCTGTTTAACAGCAGTGACTTCCTGGTaGCATTATCATAAATGGTACAGTCATGAAGGATGCTGTTTAGGA | + |
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Preference number: 5 (lower is better) Translates to: CCLRRQSCLTAVTSW*HYHKWYSHEGCCLG Trigger: TCCTAAACAGCATCCTTCATGACTGTACCATTTATGATAATGTCACCAGGAAGTCACTGCTGTTAAACAGCTTTGCCTGCGGAGACAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000618700.4 |
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| CDS CCA 90 bp | CTTTCCCAACTACGGGAGAATTACATTTGCTCAGTGTTCTTAATTTaGCAGCTTCATAACGTAGCACTTGGAAAGGGCTCACCATCTTCG | + |
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Preference number: 5 (lower is better) Translates to: LSQLRENYICSVFLI*QLHNVALGKGSPSS Trigger: CGAAGATGGTGAGCCCTTTCCAAGTGCTACGTTATGAAGCTGCCAAATTAAGAACACTGAGCAAATGTAATTCTCCCGTAGTTGGGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000479712.1 |
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| CDS TCA 90 bp | CAAATACACAAAGAGAAATGTTCACTAAGAGAACCTGCTATATGCTaGATCATCAAATGGAACACTGCTACCTTGGTACTAAACCCACTG | + |
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Preference number: 5 (lower is better) Translates to: QIHKEKCSLREPAIC*IIKWNTATLVLNPL Trigger: CAGTGGGTTTAGTACCAAGGTAGCAGTGTTCCATTTGATGATTCAGCATATAGCAGGTTCTCTTAGTGAACATTTCTCTTTGTGTATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS GCA 72 bp | CCCGAAGGCCTCCGGCCCCCTCCTTTTCCGAGCGCATaGCGCACTCTCCGCCGAGCCGCAGCCGCCAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: PEGLRPPPFPSA*RTLRRAAAASP Trigger: GGGGCTGGCGGCTGCGGCTCGGCGGAGAGTGCGGCATGCGCTCGGAAAAGGAGGGGGCCGGAGGCCTTCGGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000375299.8 ENST00000492270.1 |
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| CDS CCA 72 bp | TTTGCCCGCACCGCCCCCGCAACCGGAGGACGAAGTTaGCGGCGTCTCAGCCTCCTGCTGCTGCGAGTCGCG | + |
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Preference number: 6 (lower is better) Translates to: FARTAPATGGRS*RRLSLLLLRVA Trigger: CGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGTTGCGGGGGCGGTGCGGGCAAA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000480362.5 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS CAA 72 bp | GTTTGCCCGCACCGCCCCCGCAACCGGAGGACGAAGTaGGCGGCGTCTCAGCCTCCTGCTGCTGCGAGTCGC | + |
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Preference number: 6 (lower is better) Translates to: VCPHRPRNRRTK*AASQPPAAASR Trigger: GCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGTTGCGGGGGCGGTGCGGGCAAAC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000480362.5 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS GCA 72 bp | CCGGAGGACGAAGTTGGCGGCGTCTCAGCCTCCTGCTaGTGCGAGTCGCGGTGGAACTGCACTTCTAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: PEDEVGGVSASC*CESRWNCTSRA Trigger: GGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000480362.5 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS CCA 72 bp | GGCGGCGTCTCAGCCTCCTGCTGCTGCGAGTCGCGGTaGAACTGCACTTCTAGGGCCGACAGCTTCTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: GGVSASCCCESR*NCTSRADSFSL Trigger: GAGGGAGAAGCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS GCA 72 bp | GTCTCAGCCTCCTGCTGCTGCGAGTCGCGGTGGAACTaGACTTCTAGGGCCGACAGCTTCTCCCTCCCGCTC | + |
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Preference number: 6 (lower is better) Translates to: VSASCCCESRWN*TSRADSFSLPL Trigger: GAGCGGGAGGGAGAAGCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS GCA 72 bp | GAGGACGAAGTTGGCGGCGTCTCAGCCTCCTGCTGCTaGGAGTCGCGGTGGAACTGCACTTCTAGGGCCGAC | + |
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Preference number: 6 (lower is better) Translates to: EDEVGGVSASCC*ESRWNCTSRAD Trigger: GTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS GCA 72 bp | CAACCGGAGGACGAAGTTGGCGGCGTCTCAGCCTCCTaGTGCTGCGAGTCGCGGTGGAACTGCACTTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: QPEDEVGGVSAS*CCESRWNCTSR Trigger: CCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGTTG 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000351487.5 ENST00000375299.8 ENST00000480362.5 ENST00000484246.5 ENST00000492270.1 ENST00000618700.4 |
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| CDS CCA 72 bp | TTCTGTGCTCTGGCTGGGCTTATCCACAAGTTGGCCTaGCTCGGGGAGCCTGGCATTTGTGTTGAAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: FCALAGLIHKLA*LGEPGICVEAA Trigger: TGCTGCTTCAACACAAATGCCAGGCTCCCCGAGCCAGGCCAACTTGTGGATAAGCCCAGCCAGAGCACAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CCA 72 bp | CTCGATTCTGTGCTCTGGCTGGGCTTATCCACAAGTTaGCCTGGCTCGGGGAGCCTGGCATTTGTGTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: LDSVLWLGLSTS*PGSGSLAFVLK Trigger: CTTCAACACAAATGCCAGGCTCCCCGAGCCAGGCCAACTTGTGGATAAGCCCAGCCAGAGCACAGAATCGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CCA 72 bp | GGAAGGCTGGATTTAAACTCGATTCTGTGCTCTGGCTaGGCTTATCCACAAGTTGGCCTGGCTCGGGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: GRLDLNSILCSG*AYPQVGLARGA Trigger: GGCTCCCCGAGCCAGGCCAACTTGTGGATAAGCCCAGCCAGAGCACAGAATCGAGTTTAAATCCAGCCTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CCA 72 bp | GGGTGGAAGGCTGGATTTAAACTCGATTCTGTGCTCTaGCTGGGCTTATCCACAAGTTGGCCTGGCTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: GWKAGFKLDSVL*LGLSTSWPGSG Trigger: CCCCGAGCCAGGCCAACTTGTGGATAAGCCCAGCCAGAGCACAGAATCGAGTTTAAATCCAGCCTTCCACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS TCA 72 bp | CAAGTTGGCCTGGCTCGGGGAGCCTGGCATTTGTGTTaGAGCAGCAAGATGACCTCACCGCAAGCAAAACAT | + |
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Preference number: 6 (lower is better) Translates to: QVGLARGAWHLC*SSKMTSPQAKH Trigger: ATGTTTTGCTTGCGGTGAGGTCATCTTGCTGCTTCAACACAAATGCCAGGCTCCCCGAGCCAGGCCAACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS GCA 72 bp | GCATGGGGTGGAAGGCTGGATTTAAACTCGATTCTGTaGTCTGGCTGGGCTTATCCACAAGTTGGCCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: AWGGRLDLNSIL*SGWAYPQVGLA Trigger: AGCCAGGCCAACTTGTGGATAAGCCCAGCCAGAGCACAGAATCGAGTTTAAATCCAGCCTTCCACCCCATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CAA 72 bp | ACAAGTTGGCCTGGCTCGGGGAGCCTGGCATTTGTGTaGAAGCAGCAAGATGACCTCACCGCAAGCAAAACA | + |
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Preference number: 6 (lower is better) Translates to: TSWPGSGSLAFV*KQQDDLTASKT Trigger: TGTTTTGCTTGCGGTGAGGTCATCTTGCTGCTTCAACACAAATGCCAGGCTCCCCGAGCCAGGCCAACTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CAA 90 bp | GGCTTATCCACAAGTTGGCCTGGCTCGGGGAGCCTGGCATTTGTGTaGAAGCAGCAAGATGACCTCACCGCAAGCAAAACATCTCATTCC | + |
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Preference number: 6 (lower is better) Translates to: GLSTSWPGSGSLAFV*KQQDDLTASKTSHS Trigger: GGAATGAGATGTTTTGCTTGCGGTGAGGTCATCTTGCTGCTTCAACACAAATGCCAGGCTCCCCGAGCCAGGCCAACTTGTGGATAAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS TCA 72 bp | CTCGGGGAGCCTGGCATTTGTGTTGAAGCAGCAAGATaGCCTCACCGCAAGCAAAACATCTCATTCCTATGG | + |
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Preference number: 6 (lower is better) Translates to: LGEPGICVEAAR*PHRKQNISFLW Trigger: CCATAGGAATGAGATGTTTTGCTTGCGGTGAGGTCATCTTGCTGCTTCAACACAAATGCCAGGCTCCCCGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CAA 90 bp | CAAGATGACCTCACCGCAAGCAAAACATCTCATTCCTATGGGCTCTaGAGGCATCCGTCTGTGACCACTGACTTCAACTATGTGACACAA | + |
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Preference number: 6 (lower is better) Translates to: QDDLTASKTSHSYGL*RHPSVTTDFNYVTQ Trigger: TTGTGTCACATAGTTGAAGTCAGTGGTCACAGACGGATGCCTCAAGAGCCCATAGGAATGAGATGTTTTGCTTGCGGTGAGGTCATCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS CAA 90 bp | GAAGAGAAACACTACCAGGTGTGTCTGGGACTAAACAACAACAGTTaGCCTGATTTTCATGTTGGTGCTACTGGGAAGTATGTTGGTGCT | + |
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Preference number: 6 (lower is better) Translates to: EEKHYQVCLGLNNNS*PDFHVGATGKYVGA Trigger: AGCACCAACATACTTCCCAGTAGCACCAACATGAAAATCAGGCAAACTGTTGTTGTTTAGTCCCAGACACACCTGGTAGTGTTTCTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS TCA 72 bp | CGCAGGCAAAGCTGTTTAACAGCAGTGACTTCCTGGTaGCATTATCATAAATGGTACAGTCATGAAGGATGC | + |
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Preference number: 6 (lower is better) Translates to: RRQSCLTAVTSW*HYHKWYSHEGC Trigger: GCATCCTTCATGACTGTACCATTTATGATAATGTCACCAGGAAGTCACTGCTGTTAAACAGCTTTGCCTGCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000618700.4 |
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| CDS CCA 72 bp | TCATGTTGGTGCTACTGGGAAGTATGTTGGTGCTACTaGGAAGTAACTATTTCTAAAGTACACCACTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SCWCYWEVCWCY*EVTISKVHHLW Trigger: CCACAAGTGGTGTACTTTAGAAATAGTTACTTCCCAGTAGCACCAACATACTTCCCAGTAGCACCAACATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS TCA 72 bp | AAAGAGAAATGTTCACTAAGAGAACCTGCTATATGCTaGATCATCAAATGGAACACTGCTACCTTGGTACTA | + |
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Preference number: 6 (lower is better) Translates to: KEKCSLREPAIC*IIKWNTATLVL Trigger: TAGTACCAAGGTAGCAGTGTTCCATTTGATGATTCAGCATATAGCAGGTTCTCTTAGTGAACATTTCTCTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619079.1 |
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| CDS TCA 72 bp | GGCCTTTTAACAGGAAACATGTTCCAGAAGCCATTCTaGAATTCTACTACATTCATTTCGGAAAATAATGAC | + |
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Preference number: 6 (lower is better) Translates to: GLLTGNMFQKPF*NSTTFISENND Trigger: GTCATTATTTTCCGAAATGAATGTAGTAGAATTTCAGAATGGCTTCTGGAACATGTTTCCTGTTAAAAGGCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000481131.5 ENST00000619079.1 |
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