RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TXN2 (Homo sapiens)

Ensembl gene IDs: ENSG00000100348

Ensembl transcript IDs: ENST00000216185.7, ENST00000403313.5, ENST00000411915.1, ENST00000416967.1

Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGAGGGCTGAGTTCTATTaGGGTCCCACGCGGGCAAGG +
Preference number: 2 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRRAEFY*GPTRAR
Trigger: CCTTGCCCGCGTGGGACCCCAATAGAACTCAGCCCT...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
3UTR-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGGGCAGCAGGAAGGGCTaGCATGGAAGGGCTGAGTTC +
Preference number: 2 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRGSRKG*HGRAEF
Trigger: GAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCC...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
3UTR-3UTR TCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGCTGGCATGGAAGGGCTaGGTTCTATTGGGGTCCCAC +
Preference number: 2 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRLAWKG*VLLGSH
Trigger: GTGGGACCCCAATAGAACTCAGCCCTTCCATGCCAG...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR GCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGGCTGAGCCATCTCCCTaGAATGCGAGCGGAGGGATG +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRAEPSP*NASGGM
Trigger: CATCCCTCCGCTCGCATTGCAGGGAGATGGCTCAGC...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000216185.7
CDS-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGTCTGGAAGTGAGGGGTaGCCACTGACCCTGAGAGGG +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRSGSEG*PLTLRG
Trigger: CCCTCTCAGGGTCAGTGGCCACCCCTCACTTCCAGA...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR TCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGCACAGTGGGCACCGCTaGCACCTCATACTCAATGGC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRHSGHR*HLILNG
Trigger: GCCATTGAGTATGAGGTGTCAGCGGTGCCCACTGTG...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR TCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGGGGGGTGGGAATGGGTaGCTAGAGGGGATTTCAGTG +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRGGGNG*LEGISV
Trigger: CACTGAAATCCCCTCTAGTCACCCATTCCCACCCCC...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
63% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR TCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGGGCAGGAGGATCGCTTaGGCCTGGGAGACTGAGGCT +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQGRRIA*AWETEA
Trigger: AGCCTCAGTCTCCCAGGCTCAAGCGATCCTCCTGCC...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR GCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCACAGCCTAGCCCTCCCTaGCTGTCAAGGGCACGCCTG +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPQPSPP*LSRARL
Trigger: CAGGCGTGCCCTTGACAGGCAGGGAGGGCTAGGCTG...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR GCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGCTGCATTGTGGGGTCTaGAGGGCTCTGGAAGTGAGG +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRLHCGV*RALEVR
Trigger: CCTCACTTCCAGAGCCCTGCAGACCCCACAATGCAG...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR GCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGCACAGTTCAGCCCCCTaGTCAGAAAACCAACGGGCC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRHSSAP*SENQRA
Trigger: GGCCCGTTGGTTTTCTGAGCAGGGGGCTGAACTGTG...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGTTGTCCGGGCTGGGTTaGGTGTTACAGTCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRLSGLG*VLQSGH
Trigger: GTGGCCTGACTGTAACACCCAACCCAGCCCGGACAA...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCACTCAGGGCTGGAGCCTaGGCTCTAAGCATGGGCCCC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPLRAGA*ALSMGP
Trigger: GGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAG...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGGGGATGAAAGGCGTATaGGAGGGAAGACAGCGGTCC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRGMKGV*EGRQRS
Trigger: GGACCGCTGTCTTCCCTCCCATACGCCTTTCATCCC...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGTCTCGCCACACATCCTaGGAGAACTGCCATAGGCCC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRSRHTS*ENCHRP
Trigger: GGGCCTATGGCAGTTCTCCCAGGATGTGTGGCGAGA...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR TCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGCTCAGAAGAAGTCGCTaGGCCATCTCCCTGCAATGC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRLRRSR*AISLQC
Trigger: GCATTGCAGGGAGATGGCTCAGCGACTTCTTCTGAG...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000216185.7
CDS-3UTR TCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAGAGGAGGAGGCACCTTaGGACTTCCGGAGTCGAGGC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPEEEAP*DFRSRG
Trigger: GCCTCGACTCCGGAAGTCTCAAGGTGCCTCCTCCTC...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR GCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGGCCATCTCCCTGCAATaGGAGCGGAGGGATGCACAG +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQAISLQ*ERRDAQ
Trigger: CTGTGCATCCCTCCGCTCGCATTGCAGGGAGATGGC...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR GCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGGCTGAGCCATCTCCCTaGAATGCGAGCGGAGGGATG +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQAEPSP*NASGGM
Trigger: CATCCCTCCGCTCGCATTGCAGGGAGATGGCTCAGC...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR GCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGGGGTCCACACCACTGTaGGTGGAAATCCACAACCAC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRGSTPL*VEIHNH
Trigger: GTGGTTGTGGATTTCCACGCACAGTGGTGTGGACCC...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR GCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGATCACCACCTTCCCGTaGTGCTTGGCCACCATCTTC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRITTFP*CLATIF
Trigger: GAAGATGGTGGCCAAGCAGCACGGGAAGGTGGTGAT...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGTCTGGAAGTGAGGGGTaGCCACTGACCCTGAGAGGG +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQSGSEG*PLTLRG
Trigger: CCCTCTCAGGGTCAGTGGCCACCCCTCACTTCCAGA...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR TCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGCACAGTGGGCACCGCTaGCACCTGTACTCCCATACT +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQHSGHR*HLYSHT
Trigger: AGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTG...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR GCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAGCCATCTCCCTGCAATaGGAGCGGAGGGATGCACAG +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPAISLQ*ERRDAQ
Trigger: CTGTGCATCCCTCCGCTCGCATTGCAGGGAGATGGC...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000216185.7
CDS-3UTR GCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGCTGCATTGTGGGGTCTaGAGGGCTCTGGAAGTGAGG +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQLHCGV*RALEVR
Trigger: CCTCACTTCCAGAGCCCTGCAGACCCCACAATGCAG...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR GCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAAGAGGGCTTCCTCCCTaGAATGCGAGCGGAGGGATG +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPRGLPP*NASGGM
Trigger: CATCCCTCCGCTCGCATTGCAGGGAGGAAGCCCTCT...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416967.1
CDS-3UTR CCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCATCTGGAAGTGAGGGGTaGCCACTGACCCTGAGAGGG +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPSGSEG*PLTLRG
Trigger: CCCTCTCAGGGTCAGTGGCCACCCCTCACTTCCAGA...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGTTGTCCGGGCTGGGTTaGGTGTTACAGTCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQLSGLG*VLQSGH
Trigger: GTGGCCTGACTGTAACACCCAACCCAGCCCGGACAA...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR CCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAAGGGCTGAGTTCTATTaGGGTCCCACGCGGGCAAGG +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPRAEFY*GPTRAR
Trigger: CCTTGCCCGCGTGGGACCCCAATAGAACTCAGCCCT...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAGGCAGCAGGAAGGGCTaGCATGGAAGGGCTGAGTTC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPGSRKG*HGRAEF
Trigger: GAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCC...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR TCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGCTCAGAAGAAGTCGCTaGGCCATCTCCCTGCAATGC +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQLRRSR*AISLQC
Trigger: GCATTGCAGGGAGATGGCTCAGCGACTTCTTCTGAG...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR TCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGCTGGTGTCTCACTGTTaGCCACTCGGTCTTGAAAGT +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRLVSHC*PLGLES
Trigger: ACTTTCAAGACCGAGTGGTCAACAGTGAGACACCAG...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR TCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCACACAGTGGGCACCGCTaGCACCTCATACTCAATGGC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPHSGHR*HLILNG
Trigger: GCCATTGAGTATGAGGTGTCAGCGGTGCCCACTGTG...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR TCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCACTGGCATGGAAGGGCTaGGTTCTATTGGGGTCCCAC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPLAWKG*VLLGSH
Trigger: GTGGGACCCCAATAGAACTCAGCCCTTCCATGCCAG...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR TCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAGGGGGTGGGAATGGGTaGCTAGAGGGGATTTCAGTG +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPGGGNG*LEGISV
Trigger: CACTGAAATCCCCTCTAGTCACCCATTCCCACCCCC...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR TCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGAACCCCGCTATTAAATaGCAGCCAACACTGGAACCC +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRNPAIK*QPTLEP
Trigger: GGGTTCCAGTGTTGGCTGTCATTTAATAGCGGGGTT...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403313.5
CDS-3UTR GCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGGGGTCCACACCACTGTaGGTGGAAATCCACAACCAC +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQGSTPL*VEIHNH
Trigger: GTGGTTGTGGATTTCCACGCACAGTGGTGTGGACCC...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR GCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGATCACCACCTTCCCGTaGTGCTTGGCCACCATCTTC +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQITTFP*CLATIF
Trigger: GAAGATGGTGGCCAAGCAGCACGGGAAGGTGGTGAT...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR GCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCACACAGTTCAGCCCCCTaGTCAGAAAACCAACGGGCC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPHSSAP*SENQRA
Trigger: GGCCCGTTGGTTTTCTGAGCAGGGGGCTGAACTGTG...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGTCAAGGAGATCCTCGTaGTGTATATTGTCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRSRRSS*CILSGL
Trigger: CAGCCCGGACAATATACACCACGAGGATCTCCTTGA...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGCATCAATATCCACCTTaGCCATCACCACCTTCCCGT +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRHQYPP*PSPPSR
Trigger: ACGGGAAGGTGGTGATGGCCAAGGTGGATATTGATG...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAGGAAGCACTCAGGGCTaGAGCCTGGGCTCTAAGCAT +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPGSTQG*SLGSKH
Trigger: ATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCTTCC...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGAATGACAGCCAACACTaGAACCCAGGGTCGTCTGAA +
Preference number: 4 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRNDSQH*NPGSSE
Trigger: TTCAGACGACCCTGGGTTCCAGTGTTGGCTGTCATT...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403313.5
CDS-3UTR TCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGTTGACCACTCGGTCTTaGAAGTCAGGTCCATCCTGG +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQLTTRS*KSGPSW
Trigger: CCAGGATGGACCTGACTTTCAAGACCGAGTGGTCAA...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR TCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGAGACTGAGGCTTCAGTaGGCTGTGATTGTGCCACTG +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQRLRLQ*AVIVPL
Trigger: CAGTGGCACAATCACAGCTCACTGAAGCCTCAGTCT...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR GCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAGGGTCCACACCACTGTaGGTGGAAATCCACAACCAC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPGSTPL*VEIHNH
Trigger: GTGGTTGTGGATTTCCACGCACAGTGGTGTGGACCC...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR GCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAATCACCACCTTCCCGTaGTGCTTGGCCACCATCTTC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPITTFP*CLATIF
Trigger: GAAGATGGTGGCCAAGCAGCACGGGAAGGTGGTGAT...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR GCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCACCATCAATCATTTTCTaGACCCCCTGCCTGGGAGGC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPPSIIF*TPCLGG
Trigger: GCCTCCCAGGCAGGGGGTGCAGAAAATGATTGATGG...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR TCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCATTGACCACTCGGTCTTaGAAGTCAGGTCCATCCTGG +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPLTTRS*KSGPSW
Trigger: CCAGGATGGACCTGACTTTCAAGACCGAGTGGTCAA...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGTCAAGGAGATCCTCGTaGTGTATATTGTCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQSRRSS*CILSGL
Trigger: CAGCCCGGACAATATACACCACGAGGATCTCCTTGA...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR CCA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGCATCAATATCCACCTTaGCCATCACCACCTTCCCGT +
Preference number: 4 (lower is better)
Translates to: STVGTADTCTPILGRLRQHQYPP*PSPPSR
Trigger: ACGGGAAGGTGGTGATGGCCAAGGTGGATATTGATG...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR CCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCATCAAGGAGATCCTCGTaGTGTATATTGTCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPSRRSS*CILSGL
Trigger: CAGCCCGGACAATATACACCACGAGGATCTCCTTGA...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR TCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCACTCAGAAGAAGTCGCTaGGCCATCTTACACACATTA +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPLRRSR*AILHTL
Trigger: TAATGTGTGTAAGATGGCTCAGCGACTTCTTCTGAG...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403313.5
CDS-3UTR GCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCACAACTTCCAGGAAGTTaGTATTGTACTGCCCACACT +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPQLPGS*YCTAHT
Trigger: AGTGTGGGCAGTACAATAGCAACTTCCTGGAAGTTG...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403313.5
CDS-3UTR TCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAGGTCGTCTGAAAAGATaGAACGCAACAATTCAAGGA +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPGRLKR*NATIQG
Trigger: TCCTTGAATTGTTGCGTTTCATCTTTTCAGACGACC...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403313.5
CDS-3UTR CCA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCATCTTACACACATTATTaGTCTTCCTACAGCAACTTC +
Preference number: 4 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPSYTHY*SSYSNF
Trigger: GAAGTTGCTGTAGGAAGACCAATAATGTGTGTAAGA...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403313.5
CDS-3UTR CAA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGAGAGGAGGAGGCACCTaGAGACTTCCGGAGTCGAGG +
Preference number: 5 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRRGGGT*RLPESR
Trigger: CCTCGACTCCGGAAGTCTCAAGGTGCCTCCTCCTCT...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS-3UTR CAA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGGTTGACCACTCGGTCTaGAAAGTCAGGTCCATCCTG +
Preference number: 5 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRVDHSV*KVRSIL
Trigger: CAGGATGGACCTGACTTTCAAGACCGAGTGGTCAAC...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CAA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGGTTGACCACTCGGTCTaGAAAGTCAGGTCCATCCTG +
Preference number: 5 (lower is better)
Translates to: STVGTADTCTPILGRLRQVDHSV*KVRSIL
Trigger: CAGGATGGACCTGACTTTCAAGACCGAGTGGTCAAC...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR CAA 90 bp AGCACAGTGGGCACCGCTGACACCTGTACTCCCATACTCGGGAGGCTGAGGCAGTCATCAATATCCACCTaGGCCATCACCACCTTCCCG +
Preference number: 5 (lower is better)
Translates to: STVGTADTCTPILGRLRQSSIST*AITTFP
Trigger: CGGGAAGGTGGTGATGGCCAAGGTGGATATTGATGA...CTGCCTCAGCCTCCCGAGTATGGGAGTACAGGTGTCAGCGGTGCCCACTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000411915.1
CDS-3UTR CAA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCAGTTGACCACTCGGTCTaGAAAGTCAGGTCCATCCTG +
Preference number: 5 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPVDHSV*KVRSIL
Trigger: CAGGATGGACCTGACTTTCAAGACCGAGTGGTCAAC...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CAA 90 bp AGGGAGGCAGCAGGAAGGGCTGGCATGGAAGGGCTGAGTTCTATTGGGGTCCCATCATCAATATCCACCTaGGCCATCACCACCTTCCCG +
Preference number: 5 (lower is better)
Translates to: REAAGRAGMEGLSSIGVPSSIST*AITTFP
Trigger: CGGGAAGGTGGTGATGGCCAAGGTGGATATTGATGA...TGGGACCCCAATAGAACTCAGCCCTTCCATGCCAGCCCTTCCTGCTGCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000216185.7
ENST00000403313.5
ENST00000416967.1
CDS-3UTR CAA 90 bp AGCACTCAGGGCTGGAGCCTGGGCTCTAAGCATGGGCCCCAGGAGCCAGACAGGCTTTATTTGTCTGACTaGTTCACAGTTCAGCCCCCT +
Preference number: 5 (lower is better)
Translates to: STQGWSLGSKHGPQEPDRLYLSD*FTVQPP
Trigger: AGGGGGCTGAACTGTGAACAAGTCAGACAAATAAAG...CCTGTCTGGCTCCTGGGGCCCATGCTTAGAGCCCAGGCTCCAGCCCTGAGTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000216185.7
ENST00000416967.1
CDS CCA 90 bp AGTGACATGCCCAAAGTAACCCCGCTATTAAATGACAGCCAACACTaGAACCCAGGGTCGTCTGAAAAGATGAAACGCAACAATTCAAGG +
Preference number: 5 (lower is better)
Translates to: SDMPKVTPLLNDSQH*NPGSSEKMKRNNSR
Trigger: CCTTGAATTGTTGCGTTTCATCTTTTCAGACGACCCTGGGTTCCAGTGTTGGCTGTCATTTAATAGCGGGGTTACTTTGGGCATGTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403313.5
CDS CCA 72 bp CCCAAAGTAACCCCGCTATTAAATGACAGCCAACACTaGAACCCAGGGTCGTCTGAAAAGATGAAACGCAAC +
Preference number: 6 (lower is better)
Translates to: PKVTPLLNDSQH*NPGSSEKMKRN
Trigger: GTTGCGTTTCATCTTTTCAGACGACCCTGGGTTCCAGTGTTGGCTGTCATTTAATAGCGGGGTTACTTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403313.5
CDS CCA 72 bp TCAGAAGAAGTCGCTGAGCCATCTTACACACATTATTaGTCTTCCTACAGCAACTTCCAGGAAGTTGCTATT +
Preference number: 6 (lower is better)
Translates to: SEEVAEPSYTHY*SSYSNFQEVAI
Trigger: AATAGCAACTTCCTGGAAGTTGCTGTAGGAAGACCAATAATGTGTGTAAGATGGCTCAGCGACTTCTTCTGA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403313.5