Pregenerated sensors for TSHB (Homo sapiens)
Ensembl gene IDs: ENSG00000134200Ensembl transcript IDs: ENST00000256592.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGCAACATGGAGTGGGCATCCTGGTATTTCTACAGTCCTGTAGATaGAGTCTCTATATGTGCAAACATCCTGGGACAGAGCATATTTGG | + |
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Preference number: 5 (lower is better) Translates to: EQHGVGILVFLQSCR*SLYMCKHPGTEHIW Trigger: CCAAATATGCTCTGTCCCAGGATGTTTGCACATATAGAGACTTCATCTACAGGACTGTAGAAATACCAGGATGCCCACTCCATGTTGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS CCA 90 bp | AGCAACAGGATAGGAAAAATAGGGAGCAACATGGAGTGGGCATCCTaGTATTTCTACAGTCCTGTAGATGAAGTCTCTATATGTGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: SNRIGKIGSNMEWAS*YFYSPVDEVSICAN Trigger: GTTTGCACATATAGAGACTTCATCTACAGGACTGTAGAAATACCAGGATGCCCACTCCATGTTGCTCCCTATTTTTCCTATCCTGTTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS GCA 90 bp | TCGATGTGCATTGTATACTCAGTTGGAATACAAAAAGACATCGCTTaGCCACATGTAAGGCCAAAAAGCATGGACATCAGAAAGAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: SMCIVYSVGIQKDIA*PHVRPKSMDIRKRA Trigger: TGCTCTCTTTCTGATGTCCATGCTTTTTGGCCTTACATGTGGGCAAGCGATGTCTTTTTGTATTCCAACTGAGTATACAATGCACATCGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS CCA 90 bp | GCAATAAGCACACTCTCTCCTTTCGATGTGCATTGTATACTCAGTTaGAATACAAAAAGACATCGCTTGCCCACATGTAAGGCCAAAAAG | + |
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Preference number: 5 (lower is better) Translates to: AISTLSPFDVHCILS*NTKRHRLPTCKAKK Trigger: CTTTTTGGCCTTACATGTGGGCAAGCGATGTCTTTTTGTATTCCAACTGAGTATACAATGCACATCGAAAGGAGAGAGTGTGCTTATTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS TCA 90 bp | ATCCTACCAGATAAGACTTCTGAGGTTTGGTACAGTAGTTTGTCTTaGTGGCTTCATGTATGCAGTCACTATAGTCAGTATTGCACTTGC | + |
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Preference number: 5 (lower is better) Translates to: ILPDKTSEVWYSSLS*WLHVCSHYSQYCTC Trigger: GCAAGTGCAATACTGACTATAGTGACTGCATACATGAAGCCATCAAGACAAACTACTGTACCAAACCTCAGAAGTCTTATCTGGTAGGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS TCA 72 bp | CCCGTGTCATACAATATCCAGCACAGATGGTGGTGTTaGTGGTTAGGCAATAAGCACACTCTCTCCTTTCGA | + |
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Preference number: 6 (lower is better) Translates to: PVSYNIQHRWWC*WLGNKHTLSFR Trigger: TCGAAAGGAGAGAGTGTGCTTATTGCCTAACCATCAACACCACCATCTGTGCTGGATATTGTATGACACGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS TCA 72 bp | GGAGTGGGCATCCTGGTATTTCTACAGTCCTGTAGATaGAGTCTCTATATGTGCAAACATCCTGGGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: GVGILVFLQSCR*SLYMCKHPGTE Trigger: CTCTGTCCCAGGATGTTTGCACATATAGAGACTTCATCTACAGGACTGTAGAAATACCAGGATGCCCACTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS CAA 72 bp | TCTCTATATGTGCAAACATCCTGGGACAGAGCATATTaGGGAAGAAACAGTTTGCCATTGATATCCCGTGTC | + |
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Preference number: 6 (lower is better) Translates to: SLYVQTSWDRAY*GRNSLPLISRV Trigger: GACACGGGATATCAATGGCAAACTGTTTCTTCCCAAATATGCTCTGTCCCAGGATGTTTGCACATATAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS CAA 90 bp | TTCGATGTGCATTGTATACTCAGTTGGAATACAAAAAGACATCGCTaGCCCACATGTAAGGCCAAAAAGCATGGACATCAGAAAGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: FDVHCILSWNTKRHR*PTCKAKKHGHQKES Trigger: GCTCTCTTTCTGATGTCCATGCTTTTTGGCCTTACATGTGGGCAAGCGATGTCTTTTTGTATTCCAACTGAGTATACAATGCACATCGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS CCA 72 bp | ATAGGAAAAATAGGGAGCAACATGGAGTGGGCATCCTaGTATTTCTACAGTCCTGTAGATGAAGTCTCTATA | + |
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Preference number: 6 (lower is better) Translates to: IGKIGSNMEWAS*YFYSPVDEVSI Trigger: TATAGAGACTTCATCTACAGGACTGTAGAAATACCAGGATGCCCACTCCATGTTGCTCCCTATTTTTCCTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS CAA 72 bp | CATTGTATACTCAGTTGGAATACAAAAAGACATCGCTaGCCCACATGTAAGGCCAAAAAGCATGGACATCAG | + |
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Preference number: 6 (lower is better) Translates to: HCILSWNTKRHR*PTCKAKKHGHQ Trigger: CTGATGTCCATGCTTTTTGGCCTTACATGTGGGCAAGCGATGTCTTTTTGTATTCCAACTGAGTATACAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS GCA 72 bp | ATTGTATACTCAGTTGGAATACAAAAAGACATCGCTTaGCCACATGTAAGGCCAAAAAGCATGGACATCAGA | + |
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Preference number: 6 (lower is better) Translates to: IVYSVGIQKDIA*PHVRPKSMDIR Trigger: TCTGATGTCCATGCTTTTTGGCCTTACATGTGGGCAAGCGATGTCTTTTTGTATTCCAACTGAGTATACAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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| CDS CAA 72 bp | TTAGGCAATAAGCACACTCTCTCCTTTCGATGTGCATaGTATACTCAGTTGGAATACAAAAAGACATCGCTT | + |
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Preference number: 6 (lower is better) Translates to: LGNKHTLSFRCA*YTQLEYKKTSL Trigger: AAGCGATGTCTTTTTGTATTCCAACTGAGTATACAATGCACATCGAAAGGAGAGAGTGTGCTTATTGCCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000256592.3 |
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