Pregenerated sensors for TRBV18 (Homo sapiens)
Ensembl gene IDs: ENSG00000276557Ensembl transcript IDs: ENST00000611520.1, ENST00000631559.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCAGTAAACATGACTGTGTCCTTTCATTGGGCTGCATCTCAGTCTTaGCTCCTGTCCCCTCCTCCTGACCAGGTGTCTTGGGTTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: PVNMTVSFHWAASQS*LLSPPPDQVSWVLH Trigger: ATGCAGAACCCAAGACACCTGGTCAGGAGGAGGGGACAGGAGGCAAGACTGAGATGCAGCCCAATGAAAGGACACAGTCATGTTTACTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000611520.1 ENST00000631559.1 |
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| CDS CCA 90 bp | AAGCTGCCGAATCTCCTCGCACTACCTGCTGGATCCTCAGGATGCTaGGGCCCTCTTTGGGAAATTCAGCAGAAAATCGTTCCTTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: KLPNLLALPAGSSGC*GPLWEIQQKIVPLA Trigger: TGCCAAAGGAACGATTTTCTGCTGAATTTCCCAAAGAGGGCCCCAGCATCCTGAGGATCCAGCAGGTAGTGCGAGGAGATTCGGCAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000611520.1 ENST00000631559.1 |
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| CDS GCA 90 bp | AATAAGCTGCCGAATCTCCTCGCACTACCTGCTGGATCCTCAGGATaGTGGGGCCCTCTTTGGGAAATTCAGCAGAAAATCGTTCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: NKLPNLLALPAGSSG*WGPLWEIQQKIVPL Trigger: CAAAGGAACGATTTTCTGCTGAATTTCCCAAAGAGGGCCCCAGCATCCTGAGGATCCAGCAGGTAGTGCGAGGAGATTCGGCAGCTTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000611520.1 ENST00000631559.1 |
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| CDS CAA 72 bp | GGCCATGGAGGGAGCCCACAGGCAGGGCAAAGGCACTaGCTGCAGCACGTCGGGGAACCAGACCTCACAGCT | + |
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Preference number: 6 (lower is better) Translates to: GHGGSPQAGQRH*LQHVGEPDLTA Trigger: AGCTGTGAGGTCTGGTTCCCCGACGTGCTGCAGCAAGTGCCTTTGCCCTGCCTGTGGGCTCCCTCCATGGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000611520.1 ENST00000631559.1 |
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| CDS GCA 72 bp | CCGAATCTCCTCGCACTACCTGCTGGATCCTCAGGATaGTGGGGCCCTCTTTGGGAAATTCAGCAGAAAATC | + |
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Preference number: 6 (lower is better) Translates to: PNLLALPAGSSG*WGPLWEIQQKI Trigger: GATTTTCTGCTGAATTTCCCAAAGAGGGCCCCAGCATCCTGAGGATCCAGCAGGTAGTGCGAGGAGATTCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000611520.1 ENST00000631559.1 |
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