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Pregenerated sensors for TMDD1 (Homo sapiens)

Ensembl gene IDs: ENSG00000284730

Ensembl transcript IDs: ENST00000642069.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGGCTCCGCTCGTACAGGGGCTGCGGCAGGCGCTCCACGATCAGCTaGAGGGCGTCCCAGTCCGGCGCGGGGACCGCGGCGCGCCGGGGG +
Preference number: 5 (lower is better)
Translates to: GLRSYRGCGRRSTIS*RASQSGAGTAARRG
Trigger: CCCCCGGCGCGCCGCGGTCCCCGCGCCGGACTGGGACGCCCTGCAGCTGATCGTGGAGCGCCTGCCGCAGCCCCTGTACGAGCGGAGCCC
80% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS CCA 90 bp TCGGCCTCCACGTCGGGCTCGGGCGCCTCCAGGAGCGACCGGAAATaGCCGCACTCCTCCGGGGTCAGCAGCTCGGCCAGACGGACGGCT +
Preference number: 5 (lower is better)
Translates to: SASTSGSGASRSDRK*PHSSGVSSSARRTA
Trigger: AGCCGTCCGTCTGGCCGAGCTGCTGACCCCGGAGGAGTGCGGCCATTTCCGGTCGCTCCTGGAGGCGCCCGAGCCCGACGTGGAGGCCGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS GCA 90 bp CGCGGCAGGAAGCGCTGCCCGAACTTGCGCAGCTGCAGCGTCGCCTaGTGGTGGAGGTTCTTGCCCAGCTCCCTGGCCACGTCCGGGCGG +
Preference number: 5 (lower is better)
Translates to: RGRKRCPNLRSCSVA*WWRFLPSSLATSGR
Trigger: CCGCCCGGACGTGGCCAGGGAGCTGGGCAAGAACCTCCACCAGCAGGCGACGCTGCAGCTGCGCAAGTTCGGGCAGCGCTTCCTGCCGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS CCA 90 bp GGCAGGAAGCGCTGCCCGAACTTGCGCAGCTGCAGCGTCGCCTGCTaGTGGAGGTTCTTGCCCAGCTCCCTGGCCACGTCCGGGCGGCCG +
Preference number: 5 (lower is better)
Translates to: GRKRCPNLRSCSVAC*WRFLPSSLATSGRP
Trigger: CGGCCGCCCGGACGTGGCCAGGGAGCTGGGCAAGAACCTCCACCAGCAGGCGACGCTGCAGCTGCGCAAGTTCGGGCAGCGCTTCCTGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS CCA 90 bp AGGAAGCGCTGCCCGAACTTGCGCAGCTGCAGCGTCGCCTGCTGGTaGAGGTTCTTGCCCAGCTCCCTGGCCACGTCCGGGCGGCCGCTG +
Preference number: 5 (lower is better)
Translates to: RKRCPNLRSCSVACW*RFLPSSLATSGRPL
Trigger: CAGCGGCCGCCCGGACGTGGCCAGGGAGCTGGGCAAGAACCTCCACCAGCAGGCGACGCTGCAGCTGCGCAAGTTCGGGCAGCGCTTCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS TCA 72 bp CGGCCCCCGCCGGAGCCAGCGCCCAAACCCAGAGCGTaGGGACCAAGGCGCTCGCCAGAGTCCGCGCCGCCA +
Preference number: 6 (lower is better)
Translates to: RPPPEPAPKPRA*GPRRSPESAPP
Trigger: TGGCGGCGCGGACTCTGGCGAGCGCCTTGGTCCTCACGCTCTGGGTTTGGGCGCTGGCTCCGGCGGGGGCCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS GCA 72 bp TCGTACAGGGGCTGCGGCAGGCGCTCCACGATCAGCTaGAGGGCGTCCCAGTCCGGCGCGGGGACCGCGGCG +
Preference number: 6 (lower is better)
Translates to: SYRGCGRRSTIS*RASQSGAGTAA
Trigger: CGCCGCGGTCCCCGCGCCGGACTGGGACGCCCTGCAGCTGATCGTGGAGCGCCTGCCGCAGCCCCTGTACGA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS GCA 72 bp CCCGCCCAACCCATGGGGCTCCGCTCGTACAGGGGCTaGGGCAGGCGCTCCACGATCAGCTGCAGGGCGTCC +
Preference number: 6 (lower is better)
Translates to: PAQPMGLRSYRG*GRRSTISCRAS
Trigger: GGACGCCCTGCAGCTGATCGTGGAGCGCCTGCCGCAGCCCCTGTACGAGCGGAGCCCCATGGGTTGGGCGGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS CAA 90 bp TGCCCGAACTTGCGCAGCTGCAGCGTCGCCTGCTGGTGGAGGTTCTaGCCCAGCTCCCTGGCCACGTCCGGGCGGCCGCTGCGCCGCAGG +
Preference number: 6 (lower is better)
Translates to: CPNLRSCSVACWWRF*PSSLATSGRPLRRR
Trigger: CCTGCGGCGCAGCGGCCGCCCGGACGTGGCCAGGGAGCTGGGCAAGAACCTCCACCAGCAGGCGACGCTGCAGCTGCGCAAGTTCGGGCA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS CCA 72 bp ACGTCGGGCTCGGGCGCCTCCAGGAGCGACCGGAAATaGCCGCACTCCTCCGGGGTCAGCAGCTCGGCCAGA +
Preference number: 6 (lower is better)
Translates to: TSGSGASRSDRK*PHSSGVSSSAR
Trigger: TCTGGCCGAGCTGCTGACCCCGGAGGAGTGCGGCCATTTCCGGTCGCTCCTGGAGGCGCCCGAGCCCGACGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS GCA 72 bp GGCCGCGGCAGGAAGCGCTGCCCGAACTTGCGCAGCTaGAGCGTCGCCTGCTGGTGGAGGTTCTTGCCCAGC +
Preference number: 6 (lower is better)
Translates to: GRGRKRCPNLRS*SVACWWRFLPS
Trigger: GCTGGGCAAGAACCTCCACCAGCAGGCGACGCTGCAGCTGCGCAAGTTCGGGCAGCGCTTCCTGCCGCGGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS GCA 72 bp AAGCGCTGCCCGAACTTGCGCAGCTGCAGCGTCGCCTaGTGGTGGAGGTTCTTGCCCAGCTCCCTGGCCACG +
Preference number: 6 (lower is better)
Translates to: KRCPNLRSCSVA*WWRFLPSSLAT
Trigger: CGTGGCCAGGGAGCTGGGCAAGAACCTCCACCAGCAGGCGACGCTGCAGCTGCGCAAGTTCGGGCAGCGCTT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642069.2
CDS TCA 72 bp TGTGCTCCCATTTTACAGCTGAGGGCAAGGGCACTGTaGGGTGAGGGAGAATCTGGCCCATCTGCAGCCCAG +
Preference number: 6 (lower is better)
Translates to: CAPILQLRARAL*GEGESGPSAAQ
Trigger: CTGGGCTGCAGATGGGCCAGATTCTCCCTCACCTCACAGTGCCCTTGCCCTCAGCTGTAAAATGGGAGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642069.2