Pregenerated sensors for TIMP4 (Homo sapiens)
Ensembl gene IDs: ENSG00000157150Ensembl transcript IDs: ENST00000287814.5
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGCAACAGGCTGAGGGCAGGGCAGAAAAGTCATGGCCCCTTCCCTaGCTTGACAGTGGCCAGACTGTCCACTTGGCACTTCTTATTAGC | + |
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Preference number: 1 (lower is better) Translates to: GQQAEGRAEKSWPLP*LDSGQTVHLALLIS Trigger: GCTAATAAGAAGTGCCAAGTGGACAGTCTGGCCACTGTCAAGGCAGGGAAGGGGCCATGACTTTTCTGCCCTGCCCTCAGCCTGTTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| 3UTR CCA 90 bp | AGTCATGGCCCCTTCCCTGCCTTGACAGTGGCCAGACTGTCCACTTaGCACTTCTTATTAGCTGGCAGCAAGAGGTCAGGTGGTAATGGC | + |
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Preference number: 1 (lower is better) Translates to: SHGPFPALTVARLST*HFLLAGSKRSGGNG Trigger: GCCATTACCACCTGACCTCTTGCTGCCAGCTAATAAGAAGTGCCAAGTGGACAGTCTGGCCACTGTCAAGGCAGGGAAGGGGCCATGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| 3UTR-3UTR TCA 90 bp | TCCACTTGGCACTTCTTATTAGCTGGCAGCAAGAGGTCAGGTGGTAATGGCCAAGATCTTCAGGACTCTTaGAGGGATGTGATGGTCACT | + |
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Preference number: 2 (lower is better) Translates to: STWHFLLAGSKRSGGNGQDLQDS*RDVMVT Trigger: AGTGACCATCACATCCCTTCAAGAGTCCTGAAGATC...TTGGCCATTACCACCTGACCTCTTGCTGCCAGCTAATAAGAAGTGCCAAGTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| 3UTR-3UTR CCA 90 bp | CACATATTCCTGGGGAGGAAAGGGAATAGTCCTGGCTTTAGAAAACAGACTAAGAGGGCAGAAAAGTCATaGCCCCTTCCCTGCCTTGAC | + |
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Preference number: 2 (lower is better) Translates to: HIFLGRKGNSPGFRKQTKRAEKS*PLPCLD Trigger: GTCAAGGCAGGGAAGGGGCCATGACTTTTCTGCCCT...CTTAGTCTGTTTTCTAAAGCCAGGACTATTCCCTTTCCTCCCCAGGAATATGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| 3UTR-3UTR TCA 90 bp | CCTTCTGATACTGTACATCGCAAGGATATACCATCTCATGTGTATGACATTCGCGAAGGAGAACTGGCTTaGTCTTCAGGACTCTTGAAG | + |
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Preference number: 2 (lower is better) Translates to: PSDTVHRKDIPSHVYDIREGELA*SSGLLK Trigger: CTTCAAGAGTCCTGAAGATCAAGCCAGTTCTCCTTC...GCGAATGTCATACACATGAGATGGTATATCCTTGCGATGTACAGTATCAGAAGG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| 3UTR GCA 72 bp | GCTGAGGGCAGGGCAGAAAAGTCATGGCCCCTTCCCTaGCTTGACAGTGGCCAGACTGTCCACTTGGCACTT | + |
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Preference number: 3 (lower is better) Translates to: AEGRAEKSWPLP*LDSGQTVHLAL Trigger: AAGTGCCAAGTGGACAGTCTGGCCACTGTCAAGGCAGGGAAGGGGCCATGACTTTTCTGCCCTGCCCTCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| 3UTR-3UTR CAA 90 bp | AACCACCTTCTGATACTGTACATCGCAAGGATATACCATCTCATGTGTATGACAGGCCCCTTCCCTGCCTaGACAGTGGCCAGACTGTCC | + |
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Preference number: 3 (lower is better) Translates to: NHLLILYIARIYHLMCMTGPFPA*TVARLS Trigger: GGACAGTCTGGCCACTGTCAAGGCAGGGAAGGGGCC...TGTCATACACATGAGATGGTATATCCTTGCGATGTACAGTATCAGAAGGTGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| 3UTR-3UTR CAA 90 bp | ATTCGCCATTTCTCCCCTACCAGATCGATTAAGACAAAGGAAAACACATATTCCGGCCAGACTGTCCACTaGGCACTTCTTATTAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: IRHFSPTRSIKTKENTYSGQTVH*ALLISW Trigger: CCAGCTAATAAGAAGTGCCAAGTGGACAGTCTGGCC...GGAATATGTGTTTTCCTTTGTCTTAATCGATCTGGTAGGGGAGAAATGGCGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| 3UTR-3UTR CAA 90 bp | AACCACCTTCTGATACTGTACATCGCAAGGATATACCATCTCATGTGTATGACAGGAAGGAGAACTGGCTaGATCTTCAGGACTCTTGAA | + |
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Preference number: 3 (lower is better) Translates to: NHLLILYIARIYHLMCMTGRRTG*IFRTLE Trigger: TTCAAGAGTCCTGAAGATCAAGCCAGTTCTCCTTCC...TGTCATACACATGAGATGGTATATCCTTGCGATGTACAGTATCAGAAGGTGGTT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CCA 90 bp | GACAGTGGCCAGACTGTCCACTTGGCACTTCTTATTAGCTGGCAGCAAGAGGTCCAACAGCACCCAGCTTaGCGCGGGCCGAGGGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: DSGQTVHLALLISWQQEVQQHPA*RGPRAP Trigger: GGGAGCCCTCGGCCCGCGCCAAGCTGGGTGCTGTTG...GACCTCTTGCTGCCAGCTAATAAGAAGTGCCAAGTGGACAGTCTGGCCACTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | TACATCGCAAGGATATACCATCTCATGTGTATGACATTCGCCATTTCTCCCCTATGGCAGATGTGCTGCTaGGGGTGCGCCGGGGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: YIARIYHLMCMTFAISPLWQMCC*GCAGAQ Trigger: CTGCGCCCCGGCGCACCCTCAGCAGCACATCTGCCA...TAGGGGAGAAATGGCGAATGTCATACACATGAGATGGTATATCCTTGCGATGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CCA 90 bp | CAGGTGGTAATGGCCAAAGCTCTGCAGGGAAGGAGAACTGGCTTGATCTTCAGGAGGGCAGAAAAGTCATaGCCCCTTCCCTGCCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: QVVMAKALQGRRTGLIFRRAEKS*PLPCLD Trigger: GTCAAGGCAGGGAAGGGGCCATGACTTTTCTGCCCT...CCTGAAGATCAAGCCAGTTCTCCTTCCCTGCAGAGCTTTGGCCATTACCACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | CTCATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAAGACAAAGGCTGCAGATCCGCGACTaGGCCTGTGAGGTCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: LMCMTFAISPLPDRLRQRLQIRD*ACEVWG Trigger: CCCCCAGACCTCACAGGCTCAGTCGCGGATCTGCAG...CCTTTGTCTTAATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACATGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR GCA 90 bp | GCCAGACTGTCCACTTGGCACTTCTTATTAGCTGGCAGCAAGAGGTCAGGTGGTTTCAGACTTTCCCTCTaGACCAAGGACAGGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: ARLSTWHFLLAGSKRSGGFRLSL*TKDRSS Trigger: GGAGGACCTGTCCTTGGTGCAGAGGGAAAGTCTGAA...ACCACCTGACCTCTTGCTGCCAGCTAATAAGAAGTGCCAAGTGGACAGTCTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | AACCACCTTCTGATACTGTACATCGCAAGGATATACCATCTCATGTGTATGACACCGCGACTGAGCCTGTaGGGTCTGGGGGACTGGACG | + |
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Preference number: 4 (lower is better) Translates to: NHLLILYIARIYHLMCMTPRLSL*GLGDWT Trigger: CGTCCAGTCCCCCAGACCTCACAGGCTCAGTCGCGG...TGTCATACACATGAGATGGTATATCCTTGCGATGTACAGTATCAGAAGGTGGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CCA 90 bp | CCATCTCATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAAGACATTCCTGAGAGGCAGGTaGCCCCGGTACCAGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: PSHVYDIRHFSPTRSIKTFLRGR*PRYQLQ Trigger: CTGCAGCTGGTACCGGGGCCACCTGCCTCTCAGGAA...TGTCTTAATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACATGAGATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | AGAAAACAGACTAAGCCAGAAGAAACACTTGCAGTAACAGCTACAAGGCTAGACGAGGGCTCCCAGGCATaGCACTGCAGATCCGCGACT | + |
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Preference number: 4 (lower is better) Translates to: RKQTKPEETLAVTATRLDEGSQA*HCRSAT Trigger: AGTCGCGGATCTGCAGTGTCATGCCTGGGAGCCCTC...GTCTAGCCTTGTAGCTGTTACTGCAAGTGTTTCTTCTGGCTTAGTCTGTTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | CACATATTCCTGGGGAGGAAAGGGAATAGTCCTGGCTTTAGAAAACAGACTAAGCAACAAACTCCTTCCTaGGAGGCAGGTGGCCCCGGT | + |
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Preference number: 4 (lower is better) Translates to: HIFLGRKGNSPGFRKQTKQQTPS*EAGGPG Trigger: ACCGGGGCCACCTGCCTCTCAGGAAGGAGTTTGTTG...CTTAGTCTGTTTTCTAAAGCCAGGACTATTCCCTTTCCTCCCCAGGAATATGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR GCA 90 bp | GATATACCATCTCATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTGGCCCCGGTACCAGCTaGAGGTGCCGTCAACATGCT | + |
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Preference number: 4 (lower is better) Translates to: DIPSHVYDIRHFSPTRSIGPGTS*RCRQHA Trigger: AGCATGTTGACGGCACCTGCAGCTGGTACCGGGGCC...AATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACATGAGATGGTATATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | TCCACTTGGCACTTCTTATTAGCTGGCAGCAAGAGGTCAGGTGGTAATGGCCAAACTCTTGAAGGGATGTaGTGGTCACTGGTCCCTACT | + |
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Preference number: 4 (lower is better) Translates to: STWHFLLAGSKRSGGNGQTLEGM*WSLVPT Trigger: AGTAGGGACCAGTGACCATCACATCCCTTCAAGAGT...TTGGCCATTACCACCTGACCTCTTGCTGCCAGCTAATAAGAAGTGCCAAGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | AACACTTGCAGTAACAGCTACAAGGCTAGACTAATGGGGTTTGGGAGGCAGGGGCAGTCAGCCTGTTTATaGTGCTGTCAAACCACCTTC | + |
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Preference number: 4 (lower is better) Translates to: NTCSNSYKARLMGFGRQGQSACL*CCQTTF Trigger: GAAGGTGGTTTGACAGCATCATAAACAGGCTGACTG...CCCCTGCCTCCCAAACCCCATTAGTCTAGCCTTGTAGCTGTTACTGCAAGTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR GCA 90 bp | CATCGCAAGGATATACCATCTCATGTGTATGACATTCGCCATTTCTCCCCTACCGGTACCAGCTGCAGGTaGCGTCAACATGCTTCATAC | + |
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Preference number: 4 (lower is better) Translates to: HRKDIPSHVYDIRHFSPTGTSCR*RQHASY Trigger: GTATGAAGCATGTTGACGGCACCTGCAGCTGGTACC...GGTAGGGGAGAAATGGCGAATGTCATACACATGAGATGGTATATCCTTGCGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR GCA 90 bp | TGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAAGACAAAGGAAAACAGGCCCGAATCACAAGTaGCGAGTGGCAGATGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: CMTFAISPLPDRLRQRKTGPNHK*RVADVL Trigger: CAGCACATCTGCCACTCGGCACTTGTGATTCGGGCC...TGTTTTCCTTTGTCTTAATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR GCA 90 bp | TGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAAGACAAAGGAAAACATCATGGCCCCTTCCCTaGCTTGACAGTGGCCAGACT | + |
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Preference number: 4 (lower is better) Translates to: CMTFAISPLPDRLRQRKTSWPLP*LDSGQT Trigger: AGTCTGGCCACTGTCAAGGCAGGGAAGGGGCCATGA...TGTTTTCCTTTGTCTTAATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CCA 90 bp | AACACTTGCAGTAACAGCTACAAGGCTAGACTAATGGGGTTTGGGAGGCAGGGGAAGAGATACTGCTTCTaGCTGTTGGCTTCTAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: NTCSNSYKARLMGFGRQGKRYCF*LLASSF Trigger: GAAACTAGAAGCCAACAGCCAGAAGCAGTATCTCTT...CCCCTGCCTCCCAAACCCCATTAGTCTAGCCTTGTAGCTGTTACTGCAAGTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CCA 90 bp | CACATATTCCTGGGGAGGAAAGGGAATAGTCCTGGCTTTAGAAAACAGACTAAGGGATGTGATGGTCACTaGTCCCTACTAGGGCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: HIFLGRKGNSPGFRKQTKGCDGH*SLLGLN Trigger: GTTCAGCCCTAGTAGGGACCAGTGACCATCACATCC...CTTAGTCTGTTTTCTAAAGCCAGGACTATTCCCTTTCCTCCCCAGGAATATGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CCA 90 bp | CATCGCAAGGATATACCATCTCATGTGTATGACATTCGCCATTTCTCCCCTACCGCAGGGAAGGAGAACTaGCTTGATCTTCAGGACTCT | + |
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Preference number: 4 (lower is better) Translates to: HRKDIPSHVYDIRHFSPTAGKEN*LDLQDS Trigger: AGAGTCCTGAAGATCAAGCCAGTTCTCCTTCCCTGC...GGTAGGGGAGAAATGGCGAATGTCATACACATGAGATGGTATATCCTTGCGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CCA 90 bp | CACATATTCCTGGGGAGGAAAGGGAATAGTCCTGGCTTTAGAAAACAGACTAAGACTGCTTCTGGCTGTTaGCTTCTAGTTTCACACCAC | + |
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Preference number: 4 (lower is better) Translates to: HIFLGRKGNSPGFRKQTKTASGC*LLVSHH Trigger: GTGGTGTGAAACTAGAAGCCAACAGCCAGAAGCAGT...CTTAGTCTGTTTTCTAAAGCCAGGACTATTCCCTTTCCTCCCCAGGAATATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | GATATACCATCTCATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAGACTTTTCCATCACTaGGGACCTGACCAGTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: DIPSHVYDIRHFSPTRSIRLFHH*GPDQSR Trigger: TCTTGACTGGTCAGGTCCTCAGTGATGGAAAAGTCT...AATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACATGAGATGGTATATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | TACCATCTCATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAAGAGATCTTCAGGACTCTTaGAGGGATGTGATGGTCACT | + |
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Preference number: 4 (lower is better) Translates to: YHLMCMTFAISPLPDRLRDLQDS*RDVMVT Trigger: AGTGACCATCACATCCCTTCAAGAGTCCTGAAGATC...TCTTAATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACATGAGATGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | ATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAAGACAAAGGAAAGAAGGAGAACTGGCTTaGTCTTCAGGACTCTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: MCMTFAISPLPDRLRQRKEGELA*SSGLLK Trigger: CTTCAAGAGTCCTGAAGATCAAGCCAGTTCTCCTTC...TTTCCTTTGTCTTAATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | ATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAAGACAAAGGAAAACCATCTCATGTGTATaGCATTCGCCATTTCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: MCMTFAISPLPDRLRQRKTISCV*HSPFLP Trigger: GGGGAGAAATGGCGAATGTCATACACATGAGATGGT...TTTCCTTTGTCTTAATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR TCA 90 bp | TTTATGATGCTGTCAAACCACCTTCTGATACTGTACATCGCAAGGATATACCATTGTCAAACCACCTTCTaGTACTGTACATCGCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: FMMLSNHLLILYIARIYHCQTTF*YCTSQG Trigger: TCCTTGCGATGTACAGTATCAGAAGGTGGTTTGACA...ATGGTATATCCTTGCGATGTACAGTATCAGAAGGTGGTTTGACAGCATCATAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS TCA 90 bp | GGCGCGGGCCGAGGGCTCCCAGGCATGACACTGCAGATCCGCGACTaGGCCTGTGAGGTCTGGGGGACTGGACGGCCCCAGCAGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: GAGRGLPGMTLQIRD*ACEVWGTGRPQQGS Trigger: GGAGCCCTGCTGGGGCCGTCCAGTCCCCCAGACCTCACAGGCTCAGTCGCGGATCTGCAGTGTCATGCCTGGGAGCCCTCGGCCCGCGCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS TCA 90 bp | CCGAGGGCTCCCAGGCATGACACTGCAGATCCGCGACTGAGCCTGTaGGGTCTGGGGGACTGGACGGCCCCAGCAGGGCTCCTTCCCAAG | + |
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Preference number: 5 (lower is better) Translates to: PRAPRHDTADPRLSL*GLGDWTAPAGLLPK Trigger: CTTGGGAAGGAGCCCTGCTGGGGCCGTCCAGTCCCCCAGACCTCACAGGCTCAGTCGCGGATCTGCAGTGTCATGCCTGGGAGCCCTCGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CAA 90 bp | AACACTTGCAGTAACAGCTACAAGGCTAGACTAATGGGGTTTGGGAGGCAGGGGGCAACAGCACCCAGCTaGGCGCGGGCCGAGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: NTCSNSYKARLMGFGRQGATAPS*ARAEGS Trigger: GGAGCCCTCGGCCCGCGCCAAGCTGGGTGCTGTTGC...CCCCTGCCTCCCAAACCCCATTAGTCTAGCCTTGTAGCTGTTACTGCAAGTGTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS TCA 90 bp | TCACTGGTCCCTACTAGGGCTGAACGATGTCAACAAACTCCTTCCTaGGAGGCAGGTGGCCCCGGTACCAGCTGCAGGTGCCGTCAACAT | + |
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Preference number: 5 (lower is better) Translates to: SLVPTRAERCQQTPS*EAGGPGTSCRCRQH Trigger: ATGTTGACGGCACCTGCAGCTGGTACCGGGGCCACCTGCCTCTCAGGAAGGAGTTTGTTGACATCGTTCAGCCCTAGTAGGGACCAGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CAA 90 bp | GCTGGCAGCAAGAGGTCAGGTGGTAATGGCCAAAGCTCTGCAGGGAAGGAGAACGTAGCAGGTGGTGATTaGGCAGCCACAGTTCAGATG | + |
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Preference number: 5 (lower is better) Translates to: AGSKRSGGNGQSSAGKENVAGGD*AATVQM Trigger: CATCTGAACTGTGGCTGCCAAATCACCACCTGCTAC...GTTCTCCTTCCCTGCAGAGCTTTGGCCATTACCACCTGACCTCTTGCTGCCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CAA 90 bp | GCTGGCAGCAAGAGGTCAGGTGGTAATGGCCAAAGCTCTGCAGGGAAGGAGAACGGAAGGAGAACTGGCTaGATCTTCAGGACTCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: AGSKRSGGNGQSSAGKENGRRTG*IFRTLE Trigger: TTCAAGAGTCCTGAAGATCAAGCCAGTTCTCCTTCC...GTTCTCCTTCCCTGCAGAGCTTTGGCCATTACCACCTGACCTCTTGCTGCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CAA 90 bp | ATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTAAGACAAAGGAAAGGCCCCTTCCCTGCCTaGACAGTGGCCAGACTGTCC | + |
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Preference number: 5 (lower is better) Translates to: MCMTFAISPLPDRLRQRKGPFPA*TVARLS Trigger: GGACAGTCTGGCCACTGTCAAGGCAGGGAAGGGGCC...TTTCCTTTGTCTTAATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS TCA 90 bp | CAGGGAAGGAGAACTGGCTTGATCTTCAGGACTCTTGAAGGGATGTaGTGGTCACTGGTCCCTACTAGGGCTGAACGATGTCAACAAACT | + |
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Preference number: 5 (lower is better) Translates to: QGRRTGLIFRTLEGM*WSLVPTRAERCQQT Trigger: AGTTTGTTGACATCGTTCAGCCCTAGTAGGGACCAGTGACCATCACATCCCTTCAAGAGTCCTGAAGATCAAGCCAGTTCTCCTTCCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS-3UTR CAA 90 bp | GATATACCATCTCATGTGTATGACATTCGCCATTTCTCCCCTACCAGATCGATTGGCCAGACTGTCCACTaGGCACTTCTTATTAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: DIPSHVYDIRHFSPTRSIGQTVH*ALLISW Trigger: CCAGCTAATAAGAAGTGCCAAGTGGACAGTCTGGCC...AATCGATCTGGTAGGGGAGAAATGGCGAATGTCATACACATGAGATGGTATATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS CCA 72 bp | CAGCAACGCCAGCAGCCGCAGCAACAGCACCCAGCTTaGCGCGGGCCGAGGGCTCCCAGGCATGACACTGCA | + |
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Preference number: 6 (lower is better) Translates to: QQRQQPQQQHPA*RGPRAPRHDTA Trigger: TGCAGTGTCATGCCTGGGAGCCCTCGGCCCGCGCCAAGCTGGGTGCTGTTGCTGCGGCTGCTGGCGTTGCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS TCA 72 bp | CCCAGGCATGACACTGCAGATCCGCGACTGAGCCTGTaGGGTCTGGGGGACTGGACGGCCCCAGCAGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: PRHDTADPRLSL*GLGDWTAPAGL Trigger: GAGCCCTGCTGGGGCCGTCCAGTCCCCCAGACCTCACAGGCTCAGTCGCGGATCTGCAGTGTCATGCCTGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS TCA 72 bp | CGAGGGCTCCCAGGCATGACACTGCAGATCCGCGACTaGGCCTGTGAGGTCTGGGGGACTGGACGGCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: RGLPGMTLQIRD*ACEVWGTGRPQ Trigger: CTGGGGCCGTCCAGTCCCCCAGACCTCACAGGCTCAGTCGCGGATCTGCAGTGTCATGCCTGGGAGCCCTCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS TCA 72 bp | CCTACTAGGGCTGAACGATGTCAACAAACTCCTTCCTaGGAGGCAGGTGGCCCCGGTACCAGCTGCAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: PTRAERCQQTPS*EAGGPGTSCRC Trigger: GCACCTGCAGCTGGTACCGGGGCCACCTGCCTCTCAGGAAGGAGTTTGTTGACATCGTTCAGCCCTAGTAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS TCA 72 bp | AGAACTGGCTTGATCTTCAGGACTCTTGAAGGGATGTaGTGGTCACTGGTCCCTACTAGGGCTGAACGATGT | + |
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Preference number: 6 (lower is better) Translates to: RTGLIFRTLEGM*WSLVPTRAERC Trigger: ACATCGTTCAGCCCTAGTAGGGACCAGTGACCATCACATCCCTTCAAGAGTCCTGAAGATCAAGCCAGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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| CDS CCA 72 bp | GGACCTGACCAGTCAAGAGATACTGCTTCTGGCTGTTaGCTTCTAGTTTCACACCACAGAGGGAAGAGTCAA | + |
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Preference number: 6 (lower is better) Translates to: GPDQSRDTASGC*LLVSHHRGKSQ Trigger: TTGACTCTTCCCTCTGTGGTGTGAAACTAGAAGCCAACAGCCAGAAGCAGTATCTCTTGACTGGTCAGGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000287814.5 |
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