Pregenerated sensors for SYCN (Homo sapiens)
Ensembl gene IDs: ENSG00000179751Ensembl transcript IDs: ENST00000318438.7
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGAGCCCAGGGATGGGCTaGGTGAGGGGCTTGGCACTC | + |
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Preference number: 2 (lower is better) Translates to: CRGGGRGQAERSSSWVLGSPGMG*VRGLAL Trigger: GAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGGCT...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR TCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGGCCGGGACCACACGGTaGGCTCGCAGCGCGGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGAGTTR*ARSAGP Trigger: TGGCCCCGCGCTGCGAGCTCACCGTGTGGTCCCGGC...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 73% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGCGCGTCCCGTCCGAGTaGTTGAGGTCGGCGGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGRVPSE*LRSAEA Trigger: CGCCTCCGCCGACCTCAAGCACTCGGACGGGACGCG...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGGCGTCTTGCCCGCCTTaGCTTGCCGGGACCACACGG | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGASCPP*LAGTTR Trigger: CCGTGTGGTCCCGGCAAGGCAAGGCGGGCAAGACGC...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGCCAGGCGCGGGTAGGTaGCGGCAGAGAACTTGTGCG | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGPGAGR*RQRTCA Trigger: CGCACAAGTTCTCTGCCGGCACCTACCCGCGCCTGG...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGAGAACTTGTGCGTCTTaGCCGCCTTGCCTTGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGRTCAS*PPCLAG Trigger: CCCGGCAAGGCAAGGCGGGCAAGACGCACAAGTTCT...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGCCGGCAGAGAACTTGTaGGTCTTGCCCGCCTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGPAENL*VLPALP Trigger: AGGCAAGGCGGGCAAGACGCACAAGTTCTCTGCCGG...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGGCACAAAGGCTGTATTaGAGGGGAGGTGGGAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGAQRLY*RGGGRG Trigger: CCCCCTCCCACCTCCCCTGCAATACAGCCTTTGTGC...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGCAGCAATGCATCAGCTaGACCTGCAGTAGAGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGQQCIS*TCSRAR Trigger: CCGCGCTCTACTGCAGGTGCAGCTGATGCATTGCTG...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CCA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGACCTCCTCCTGGGTCTTaGGGCCCCGGAGCAGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRPPPGS*GPGAEP Trigger: GGGCTCTGCTCCGGGGCCCCAAGACCCAGGAGGAGG...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR TCA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGACGGGGCCACCACAAGTaGGGAGGCGGTGTTGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRRGHHK*GGGVGP Trigger: TGGGCCAACACCGCCTCCTCACTTGTGGTGGCCCCG...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGTCTTGTCATAGAGCTTaGCGCAAGTGCGCGTCCCGT | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGSCHRA*RKCASR Trigger: ACGGGACGCGCACTTGCGCCAAGCTCTATGACAAGA...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CCA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGGGGCTTGGCACTCTGTaGAAGCTGCAGATGAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: CRGGGRGQAERSSSWVLGGLGTL*KLQMRD Trigger: GTCTCTCATCTGCAGCTTCCACAGAGTGCCAAGCCC...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 64% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGACAGGTAGGGCAGGTCTaGGCCCGACTCCAGCGACAG | + |
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Preference number: 4 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRQVGQV*ARLQRQ Trigger: CTGTCGCTGGAGTCGGGCGCAGACCTGCCCTACCTG...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGATTGCCCGCCTTGCCTTaGCGGGACCACACGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRLPALP*RDHTVS Trigger: GCTCACCGTGTGGTCCCGGCAAGGCAAGGCGGGCAA...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR TCA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGACAGGGATGGGCTGAGTaGGGGGCTTGGCACTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRQGWAE*GAWHSV Trigger: CACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTG...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGAAGAGCTTGGCGCAAGTaGGCGTCCCGTCCGAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRRAWRK*ASRPSA Trigger: AGCACTCGGACGGGACGCGCACTTGCGCCAAGCTCT...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR GCA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGAACCAGTCTCCTAAGATaGCCCGGCGGTACTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRTSLLR*PGGTPP Trigger: TGGAGGAGTACCGCCGGGGCATCTTAGGAGACTGGT...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR TCA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGATGTGGAAGCTGCAGATaGGAGACCAGCAATGCATCA | + |
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Preference number: 4 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRCGSCR*ETSNAS Trigger: TGATGCATTGCTGGTCTCTCATCTGCAGCTTCCACA...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CAA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGGTCCCGTCCGAGTGCTaGAGGTCGGCGGAGGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: CRGGGRGQAERSSSWVLGVPSEC*RSAEAG Trigger: CCCCGCCTCCGCCGACCTCAAGCACTCGGACGGGAC...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS TCA 90 bp | TCTTGTCATAGAGCTTGGCGCAAGTGCGCGTCCCGTCCGAGTGCTTaGGGTCGGCGGAGGCGGGGCAGGCGCCCTGGGCGCAAGGCACGG | + |
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Preference number: 5 (lower is better) Translates to: SCHRAWRKCASRPSA*GRRRRGRRPGRKAR Trigger: CCGTGCCTTGCGCCCAGGGCGCCTGCCCCGCCTCCGCCGACCTCAAGCACTCGGACGGGACGCGCACTTGCGCCAAGCTCTATGACAAGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS CCA 90 bp | CGCAGCGCGGGGCCACCACAAGTGAGGAGGCGGTGTTGGCCCAGTTaGAGGGCAGGTAGGGCAGGTCTGCGCCCGACTCCAGCGACAGCT | + |
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Preference number: 5 (lower is better) Translates to: RSAGPPQVRRRCWPS*RAGRAGLRPTPATA Trigger: AGCTGTCGCTGGAGTCGGGCGCAGACCTGCCCTACCTGCCCTCCAACTGGGCCAACACCGCCTCCTCACTTGTGGTGGCCCCGCGCTGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CAA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGCTTGCCCGCCTTGCCTaGCCGGGACCACACGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: CRGGGRGQAERSSSWVLGLARLA*PGPHGE Trigger: CTCACCGTGTGGTCCCGGCAAGGCAAGGCGGGCAAG...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CAA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGTGCGTCTTGCCCGCCTaGCCTTGCCGGGACCACACG | + |
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Preference number: 5 (lower is better) Translates to: CRGGGRGQAERSSSWVLGCVLPA*PCRDHT Trigger: CGTGTGGTCCCGGCAAGGCAAGGCGGGCAAGACGCA...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CAA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGGTGCCGGCAGAGAACTaGTGCGTCTTGCCCGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: CRGGGRGQAERSSSWVLGVPAEN*CVLPAL Trigger: CAAGGCGGGCAAGACGCACAAGTTCTCTGCCGGCAC...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS TCA 90 bp | AGAACTTGTGCGTCTTGCCCGCCTTGCCTTGCCGGGACCACACGGTaGGCTCGCAGCGCGGGGCCACCACAAGTGAGGAGGCGGTGTTGG | + |
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Preference number: 5 (lower is better) Translates to: RTCASCPPCLAGTTR*ARSAGPPQVRRRCW Trigger: CCAACACCGCCTCCTCACTTGTGGTGGCCCCGCGCTGCGAGCTCACCGTGTGGTCCCGGCAAGGCAAGGCGGGCAAGACGCACAAGTTCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS GCA 90 bp | AGTCTCCTAAGATGCCCCGGCGGTACTCCTCCAGGCGCGGGTAGGTaGCGGCAGAGAACTTGTGCGTCTTGCCCGCCTTGCCTTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: SLLRCPGGTPPGAGR*RQRTCASCPPCLAG Trigger: CCCGGCAAGGCAAGGCGGGCAAGACGCACAAGTTCTCTGCCGGCACCTACCCGCGCCTGGAGGAGTACCGCCGGGGCATCTTAGGAGACT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CAA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGATCCTCCTCCTGGGTCTaGGGGCCCCGGAGCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRSSSWV*GPRSRA Trigger: GGCTCTGCTCCGGGGCCCCAAGACCCAGGAGGAGGA...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CAA 90 bp | TGCAGGGGAGGTGGGAGGGGGCAGGCAGAACGCTCCTCCTCCTGGGTCTTGGGGAGCGCGGAGATAGCGTaGGACCAGTCTCCTAAGATG | + |
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Preference number: 5 (lower is better) Translates to: CRGGGRGQAERSSSWVLGSAEIA*DQSPKM Trigger: CATCTTAGGAGACTGGTCCAACGCTATCTCCGCGCT...CCCCAAGACCCAGGAGGAGGAGCGTTCTGCCTGCCCCCTCCCACCTCCCCTGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CAA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGAAGTGAGGAGGCGGTGTaGGCCCAGTTGGAGGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRSEEAV*AQLEGR Trigger: CCTGCCCTCCAACTGGGCCAACACCGCCTCCTCACT...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS-3UTR CAA 90 bp | CCCAGGGATGGGCTGAGTGAGGGGCTTGGCACTCTGTGGAAGCTGCAGATGAGAGAGAACTTGTGCGTCTaGCCCGCCTTGCCTTGCCGG | + |
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Preference number: 5 (lower is better) Translates to: PRDGLSEGLGTLWKLQMRENLCV*PALPCR Trigger: CCGGCAAGGCAAGGCGGGCAAGACGCACAAGTTCTC...TCTCATCTGCAGCTTCCACAGAGTGCCAAGCCCCTCACTCAGCCCATCCCTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS CCA 72 bp | GAGTGCTTGAGGTCGGCGGAGGCGGGGCAGGCGCCCTaGGCGCAAGGCACGGAGGCAAGGGCCAGGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: ECLRSAEAGQAP*AQGTEARARAS Trigger: GCTGGCCCTGGCCCTTGCCTCCGTGCCTTGCGCCCAGGGCGCCTGCCCCGCCTCCGCCGACCTCAAGCACTC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS TCA 72 bp | AGAGCTTGGCGCAAGTGCGCGTCCCGTCCGAGTGCTTaGGGTCGGCGGAGGCGGGGCAGGCGCCCTGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: RAWRKCASRPSA*GRRRRGRRPGR Trigger: GCGCCCAGGGCGCCTGCCCCGCCTCCGCCGACCTCAAGCACTCGGACGGGACGCGCACTTGCGCCAAGCTCT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS TCA 72 bp | GCGTCTTGCCCGCCTTGCCTTGCCGGGACCACACGGTaGGCTCGCAGCGCGGGGCCACCACAAGTGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: ASCPPCLAGTTR*ARSAGPPQVRR Trigger: CCTCCTCACTTGTGGTGGCCCCGCGCTGCGAGCTCACCGTGTGGTCCCGGCAAGGCAAGGCGGGCAAGACGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS GCA 72 bp | CCGGCAGAGAACTTGTGCGTCTTGCCCGCCTTGCCTTaGCGGGACCACACGGTGAGCTCGCAGCGCGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: PAENLCVLPALP*RDHTVSSQRGA Trigger: GGCCCCGCGCTGCGAGCTCACCGTGTGGTCCCGGCAAGGCAAGGCGGGCAAGACGCACAAGTTCTCTGCCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS CCA 72 bp | CGCAGCGCGGGGCCACCACAAGTGAGGAGGCGGTGTTaGCCCAGTTGGAGGGCAGGTAGGGCAGGTCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: RSAGPPQVRRRC*PSWRAGRAGLR Trigger: GCGCAGACCTGCCCTACCTGCCCTCCAACTGGGCCAACACCGCCTCCTCACTTGTGGTGGCCCCGCGCTGCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS CAA 72 bp | GCCGGCAGAGAACTTGTGCGTCTTGCCCGCCTTGCCTaGCCGGGACCACACGGTGAGCTCGCAGCGCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: AGRELVRLARLA*PGPHGELAARG Trigger: GCCCCGCGCTGCGAGCTCACCGTGTGGTCCCGGCAAGGCAAGGCGGGCAAGACGCACAAGTTCTCTGCCGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS CAA 90 bp | CGGGTAGGTGCCGGCAGAGAACTTGTGCGTCTTGCCCGCCTTGCCTaGCCGGGACCACACGGTGAGCTCGCAGCGCGGGGCCACCACAAG | + |
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Preference number: 6 (lower is better) Translates to: RVGAGRELVRLARLA*PGPHGELAARGHHK Trigger: CTTGTGGTGGCCCCGCGCTGCGAGCTCACCGTGTGGTCCCGGCAAGGCAAGGCGGGCAAGACGCACAAGTTCTCTGCCGGCACCTACCCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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| CDS GCA 72 bp | AGATGCCCCGGCGGTACTCCTCCAGGCGCGGGTAGGTaGCGGCAGAGAACTTGTGCGTCTTGCCCGCCTTGC | + |
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Preference number: 6 (lower is better) Translates to: RCPGGTPPGAGR*RQRTCASCPPC Trigger: GCAAGGCGGGCAAGACGCACAAGTTCTCTGCCGGCACCTACCCGCGCCTGGAGGAGTACCGCCGGGGCATCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318438.7 |
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