Pregenerated sensors for STX18-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000248221

Ensembl transcript IDs: ENST00000515487.1

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCTCTCCTCTTTTCAGATCGACCAGCCAGCAGAGAGGGTATATTCTaGCCCATGCCCCACTCGTATTGGGCCATAACTCTAAAGTCAGGT	+
Preference number: 5 (lower is better) Translates to: PLLFSDRPASREGIF*PMPHSYWAITLKSG Trigger: ACCTGACTTTAGAGTTATGGCCCAATACGAGTGGGGCATGGGCCAGAATATACCCTCTCTGCTGGCTGGTCGATCTGAAAAGAGGAGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000515487.1
CDS CCA 72 bp	TCCCCACTGCCATGCATCATGTGGAGGGACTTCAGCTaGACCAGTCTTCCTGGCCTATCTCCCAACCTTTAC	+
Preference number: 6 (lower is better) Translates to: SPLPCIMWRDFS*TSLPGLSPNLY Trigger: GTAAAGGTTGGGAGATAGGCCAGGAAGACTGGTCCAGCTGAAGTCCCTCCACATGATGCATGGCAGTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515487.1
CDS GCA 72 bp	TCCATCAGACTGATGGTAGAGCACCCGCCACGTGTGTaGCAGGTAGTGCATAAACTGCTTGACGTGTGCTCT	+
Preference number: 6 (lower is better) Translates to: SIRLMVEHPPRV*QVVHKLLDVCS Trigger: AGAGCACACGTCAAGCAGTTTATGCACTACCTGGCACACACGTGGCGGGTGCTCTACCATCAGTCTGATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515487.1
CDS CCA 72 bp	TTTTCAGATCGACCAGCCAGCAGAGAGGGTATATTCTaGCCCATGCCCCACTCGTATTGGGCCATAACTCTA	+
Preference number: 6 (lower is better) Translates to: FSDRPASREGIF*PMPHSYWAITL Trigger: TAGAGTTATGGCCCAATACGAGTGGGGCATGGGCCAGAATATACCCTCTCTGCTGGCTGGTCGATCTGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000515487.1

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