Pregenerated sensors for SSX5 (Homo sapiens)
Ensembl gene IDs: ENSG00000165583Ensembl transcript IDs: ENST00000311798.5, ENST00000347757.6
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGGGAGATGCCTATACTaGTACTTGGTGTGTGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: ILVLGVCVCVCVCVCVCAGRCLY*YLVCVC Trigger: ACACACACACACCAAGTACCAGTATAGGCATCTCCC...CGCACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000311798.5 ENST00000347757.6 |
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| CDS-3UTR TCA 90 bp | ATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGGAGCACTCTGTCTCTaGTTTTGGAAGAATCGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: ILVLGVCVCVCVCVCVCAGALCL*FWKNRN Trigger: GTTTCGATTCTTCCAAAATCAGAGACAGAGTGCTCC...CGCACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000311798.5 ENST00000347757.6 |
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| CDS-3UTR GCA 90 bp | ATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGACTTGTCTCCAGGGATaGTTTTGCATCTTCTCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: ILVLGVCVCVCVCVCVCATCLQG*FCIFSG Trigger: ACCAGAGAAGATGCAAAAGCATCCCTGGAGACAAGT...CGCACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311798.5 |
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| CDS-3UTR CCA 90 bp | TGCCTATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTATACTGGTACTTaGTGTGTGTGTGTGTGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: CLYWYLVCVCVCVCVCVCAYTGT*CVCVCV Trigger: CACACACACACACACACACCAAGTACCAGTATAGGC...ACACACACACACACACACACACACACACACACACACCAAGTACCAGTATAGGCA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000311798.5 ENST00000347757.6 |
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| CDS-3UTR CCA 90 bp | GATGCCTATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGAGATGCCTATACTaGTACTTGGTGTGTGTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: DAYTGTWCVCVCVCVCVCGRCLY*YLVCVC Trigger: ACACACACACACCAAGTACCAGTATAGGCATCTCCC...ACACACACACACACACACACACACACACACACACCAAGTACCAGTATAGGCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000311798.5 ENST00000347757.6 |
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| CDS-3UTR TCA 90 bp | TATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGAGCACTCTGTCTCTaGTTTTGGAAGAATCGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: YTGTWCVCVCVCVCVCVCGALCL*FWKNRN Trigger: GTTTCGATTCTTCCAAAATCAGAGACAGAGTGCTCC...GCACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000311798.5 ENST00000347757.6 |
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| CDS-3UTR GCA 90 bp | TATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAAACAATCAGAGCGTaGGTACTCTGTGGAAAAATC | + |
|
Preference number: 4 (lower is better) Translates to: YTGTWCVCVCVCVCVCVCETIRA*VLCGKI Trigger: GATTTTTCCACAGAGTACGCACGCTCTGATTGTTTC...GCACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000347757.6 |
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| CDS-3UTR CAA 90 bp | ATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCCTATACTGGTACTaGGTGTGTGTGTGTGTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: ILVLGVCVCVCVCVCVCACLYWY*VCVCVC Trigger: ACACACACACACACACACCAAGTACCAGTATAGGCA...CGCACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000311798.5 ENST00000347757.6 |
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| CDS-3UTR CAA 90 bp | GATGCCTATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCAGGGATGCTTTaGCATCTTCTCTGGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: DAYTGTWCVCVCVCVCVCSPGML*HLLWYL Trigger: CAAATACCAGAGAAGATGCAAAAGCATCCCTGGAGA...ACACACACACACACACACACACACACACACACACCAAGTACCAGTATAGGCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000311798.5 |
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| CDS-3UTR CAA 90 bp | GATGCCTATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCATCGAAGGCCTTTaGCATCTTCTCTGGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: DAYTGTWCVCVCVCVCVCIIEGL*HLLWYL Trigger: CAAATACCAGAGAAGATGCAAAAGGCCTTCGATGAT...ACACACACACACACACACACACACACACACACACCAAGTACCAGTATAGGCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000347757.6 |
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| CDS-3UTR CAA 90 bp | GCCTATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTCTGTCTCTGATTTaGGAAGAATCGAAACAATCA | + |
|
Preference number: 5 (lower is better) Translates to: AYTGTWCVCVCVCVCVCVTLSLI*EESKQS Trigger: TGATTGTTTCGATTCTTCCAAAATCAGAGACAGAGT...CACACACACACACACACACACACACACACACACACACCAAGTACCAGTATAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000311798.5 ENST00000347757.6 |
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| CDS-3UTR CAA 90 bp | GATGCCTATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTCTGTCTCTGATTTaGGAAGAATCGAAACAATCA | + |
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Preference number: 5 (lower is better) Translates to: DAYTGTWCVCVCVCVCVCTLSLI*EESKQS Trigger: TGATTGTTTCGATTCTTCCAAAATCAGAGACAGAGT...ACACACACACACACACACACACACACACACACACCAAGTACCAGTATAGGCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000311798.5 ENST00000347757.6 |
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