Pregenerated sensors for SSX2B (Homo sapiens)
Ensembl gene IDs: ENSG00000268447Ensembl transcript IDs: ENST00000596480.6, ENST00000612490.1, ENST00000616191.4
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGGCTTCTTGGGCATaGTCTTCGGGGAGATTCCCT | + |
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Preference number: 4 (lower is better) Translates to: ILVLGVCVCVCVCVCVCVLASWA*SSGRFP Trigger: AGGGAATCTCCCCGAAGATCATGCCCAAGAAGCCAG...CACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000596480.6 ENST00000612490.1 |
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| CDS-3UTR TCA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGCTTCTTGGGCATaGTCTTCGGGGAGATTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: YWYLVCVCVCVCVCVCVCLASWA*SSGRFP Trigger: AGGGAATCTCCCCGAAGATCATGCCCAAGAAGCCAG...ACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000596480.6 ENST00000612490.1 |
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| CDS-3UTR TCA 90 bp | GTCTGTGTGTGTGTGTTTGTGTGTCTGGTGTGTAAATGCAGAGGGGAAAATCGGCTGGCTTCTTGGGCATaGTCTTCGGGGAGATTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: VCVCVFVCLVCKCRGENRLASWA*SSGRFP Trigger: AGGGAATCTCCCCGAAGATCATGCCCAAGAAGCCAG...CCGATTTTCCCCTCTGCATTTACACACCAGACACACAAACACACACACACAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000616191.4 |
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| CDS-3UTR CCA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTATACTGGTACTTaGTGTGTGTGTGTGTGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: YWYLVCVCVCVCVCVCVCAYTGT*CVCVCV Trigger: CACACACACACACACACACCAAGTACCAGTATAAGC...ACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000596480.6 ENST00000612490.1 |
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| CDS-3UTR CCA 90 bp | ATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCTCTTCCTTTTCTTaGGCCTCCCTATTTCCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: ILVLGVCVCVCVCVCVCVLSSFS*ASLFPD Trigger: ATCTGGAAATAGGGAGGCCCAAGAAAAGGAAGAGAG...CACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000612490.1 |
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| CDS-3UTR CCA 90 bp | TATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTATACTGGTACTTaGTGTGTGTGTGTGTGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: YTGTWCVCVCVCVCVCVCAYTGT*CVCVCV Trigger: CACACACACACACACACACCAAGTACCAGTATAAGC...ACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000596480.6 ENST00000612490.1 |
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| CDS-3UTR TCA 90 bp | TATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCACCCATAGAAGTTaGCAAACTGAATCGACCAAT | + |
|
Preference number: 4 (lower is better) Translates to: YTGTWCVCVCVCVCVCVCCTHRS*QTESTN Trigger: ATTGGTCGATTCAGTTTGTCAACTTCTATGGGTGCA...ACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612490.1 |
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| CDS-3UTR CAA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCTTATACTGGTACTaGGTGTGTGTGTGTGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: YWYLVCVCVCVCVCVCVCCLYWY*VCVCVC Trigger: ACACACACACACACACACCAAGTACCAGTATAAGCA...ACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000596480.6 ENST00000612490.1 |
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| CDS-3UTR CAA 90 bp | ATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCATCGAAGGCCTTTaGGATCTTCTCTGGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: ILVLGVCVCVCVCVCVCVIIEGL*DLLWYL Trigger: CAAATACCAGAGAAGATCCAAAAGGCCTTCGATGAT...CACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000596480.6 ENST00000612490.1 |
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| CDS-3UTR CAA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCATCGAAGGCCTTTaGGATCTTCTCTGGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: YWYLVCVCVCVCVCVCVCIIEGL*DLLWYL Trigger: CAAATACCAGAGAAGATCCAAAAGGCCTTCGATGAT...ACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000596480.6 ENST00000612490.1 |
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| CDS-3UTR CAA 90 bp | GTCTGTGTGTGTGTGTTTGTGTGTCTGGTGTGTAAATGCAGAGGGGAAAATCGGATCATCGAAGGCCTTTaGGATCTTCTCTGGTATTTG | + |
|
Preference number: 5 (lower is better) Translates to: VCVCVFVCLVCKCRGENRIIEGL*DLLWYL Trigger: CAAATACCAGAGAAGATCCAAAAGGCCTTCGATGAT...CCGATTTTCCCCTCTGCATTTACACACCAGACACACAAACACACACACACAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000616191.4 |
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| CDS-3UTR CAA 90 bp | TATACTGGTACTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCTTATACTGGTACTaGGTGTGTGTGTGTGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: YTGTWCVCVCVCVCVCVCCLYWY*VCVCVC Trigger: ACACACACACACACACACCAAGTACCAGTATAAGCA...ACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000596480.6 ENST00000612490.1 |
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