Pregenerated sensors for SPDYE16 (Homo sapiens)
Ensembl gene IDs: ENSG00000185040, ENSG00000281950Ensembl transcript IDs: ENST00000632547.1, ENST00000633523.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCGACCTTCCAGGCTCCAGCCCCGCCTCAGCCTCCTaGGTAGTTGGGAGTAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: ECSGRIRAPCSPDLPGSSPASAS*VVGSRD Trigger: ATCTCTACTCCCAACTACTCAGGAGGCTGAGGCGGG...GCTGGAGCCTGGAAGGTCGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000632547.1 |
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| 3UTR-3UTR TCA 90 bp | GAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCGACCTTCCAGGCTCCAGCCACGTTGCCCAGGCTTaGAGCCGGATCAAGCAATTG | + |
|
Preference number: 2 (lower is better) Translates to: ECSGRIRAPCSPDLPGSSHVAQA*SRIKQL Trigger: CAATTGCTTGATCCGGCTTCAAGCCTGGGCAACGTG...GCTGGAGCCTGGAAGGTCGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000632547.1 |
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| 3UTR-3UTR TCA 90 bp | GGAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCAACCTTCCAGGCTCCAGCCCGCCTCAGCCTCCTaGGTAGTTGGGAGTAGAGAT | + |
|
Preference number: 2 (lower is better) Translates to: GVQWQDQGSVQPQPSRLQPASAS*VVGSRD Trigger: ATCTCTACTCCCAACTACTCAGGAGGCTGAGGCGGG...CTGGAGCCTGGAAGGTTGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000633523.1 |
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| 3UTR-3UTR TCA 90 bp | GGAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCAACCTTCCAGGCTCCAGCACGTTGCCCAGGCTTaGAGCCGGATCAAGCAATTG | + |
|
Preference number: 2 (lower is better) Translates to: GVQWQDQGSVQPQPSRLQHVAQA*SRIKQL Trigger: CAATTGCTTGATCCGGCTTCAAGCCTGGGCAACGTG...CTGGAGCCTGGAAGGTTGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000633523.1 |
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| 3UTR-3UTR CCA 90 bp | GAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCGACCTTCCAGGCTCCAGCGCATCCCACGTCGCCTaGCTAATTTTTGTATTTTTG | + |
|
Preference number: 2 (lower is better) Translates to: ECSGRIRAPCSPDLPGSSASHVA*LIFVFL Trigger: CAAAAATACAAAAATTAGCCAGGCGACGTGGGATGC...GCTGGAGCCTGGAAGGTCGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000632547.1 |
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| 3UTR-3UTR CCA 90 bp | GGAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCAACCTTCCAGGCTCCAGGCGTCCCACATCGCCTaGCTAATTTTTGTATTTTTG | + |
|
Preference number: 2 (lower is better) Translates to: GVQWQDQGSVQPQPSRLQASHIA*LIFVFL Trigger: CAAAAATACAAAAATTAGCCAGGCGATGTGGGACGC...CTGGAGCCTGGAAGGTTGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000633523.1 |
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| 3UTR-3UTR CAA 90 bp | GAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCGACCTTCCAGGCTCCAGCCCACGTTGCCCAGGCTaGAAGCCGGATCAAGCAATT | + |
|
Preference number: 3 (lower is better) Translates to: ECSGRIRAPCSPDLPGSSPRCPG*KPDQAI Trigger: AATTGCTTGATCCGGCTTCAAGCCTGGGCAACGTGG...GCTGGAGCCTGGAAGGTCGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000632547.1 |
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| 3UTR-3UTR CAA 90 bp | GGAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCAACCTTCCAGGCTCCAGCCACGTTGCCCAGGCTaGAAGCCGGATCAAGCAATT | + |
|
Preference number: 3 (lower is better) Translates to: GVQWQDQGSVQPQPSRLQPRCPG*KPDQAI Trigger: AATTGCTTGATCCGGCTTCAAGCCTGGGCAACGTGG...CTGGAGCCTGGAAGGTTGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000633523.1 |
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| CDS-3UTR GCA 90 bp | GAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCGACCTTCCAGGCTCCAGCTCGCCCAGACTGGAGTaGAGTGGCAGGATCAGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: ECSGRIRAPCSPDLPGSSSPRLE*SGRIRA Trigger: AGCCCTGATCCTGCCACTGCACTCCAGTCTGGGCGA...GCTGGAGCCTGGAAGGTCGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000632547.1 |
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| CDS-3UTR GCA 90 bp | GGAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCAACCTTCCAGGCTCCAGTCGCCCAGACTGGAGTaGAGTGGCAGGATCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GVQWQDQGSVQPQPSRLQSPRLE*SGRIRA Trigger: AGCCCTGATCCTGCCACTGCACTCCAGTCTGGGCGA...CTGGAGCCTGGAAGGTTGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000633523.1 |
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| CDS-3UTR TCA 90 bp | GAGTGCAGTGGCAGGATCAGGGCTCCGTGCAGCCCCGACCTTCCAGGCTCCAGCCAAACTCAGTATTTATaGTTCTTTTTGAGGCAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: ECSGRIRAPCSPDLPGSSQTQYL*FFLRQG Trigger: ACCCTGCCTCAAAAAGAATCATAAATACTGAGTTTG...GCTGGAGCCTGGAAGGTCGGGGCTGCACGGAGCCCTGATCCTGCCACTGCACTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000632547.1 |
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