Pregenerated sensors for SPDYC (Homo sapiens)
Ensembl gene IDs: ENSG00000204710Ensembl transcript IDs: ENST00000377185.2
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | GGGCACTTGGATGACACAGGCTTAAGCAAGTGGCTGCTGCAGTGCTaGGGCAAACCACAGGGGGAACAGTGGGGCGGCGAGAGGCCAGGG | + |
Preference number: 5 (lower is better) Translates to: GHLDDTGLSKWLLQC*GKPQGEQWGGERPG Trigger: CCCTGGCCTCTCGCCGCCCCACTGTTCCCCCTGTGGTTTGCCCCAGCACTGCAGCAGCCACTTGCTTAAGCCTGTGTCATCCAAGTGCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS TCA 90 bp | TTGCAAGGTACAGGGCCAAGAACAGGCTGCTGTGGGTATACTCGCTaGGCTTCAGGTGGGCGCGCTGGAAGTAGACCAGCACCATGGCCA | + |
Preference number: 5 (lower is better) Translates to: LQGTGPRTGCCGYTR*ASGGRAGSRPAPWP Trigger: TGGCCATGGTGCTGGTCTACTTCCAGCGCGCCCACCTGAAGCTCAGCGAGTATACCCACAGCAGCCTGTTCTTGGCCCTGTACCTTGCAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS TCA 90 bp | GGAGGGAGGGCGATGACATTCAGAGGTCAGAGAAGGGCACTTGGATaGCACAGGCTTAAGCAAGTGGCTGCTGCAGTGCTGGGGCAAACC | + |
Preference number: 5 (lower is better) Translates to: GGRAMTFRGQRRALG*HRLKQVAAAVLGQT Trigger: GGTTTGCCCCAGCACTGCAGCAGCCACTTGCTTAAGCCTGTGTCATCCAAGTGCCCTTCTCTGACCTCTGAATGTCATCGCCCTCCCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS GCA 90 bp | ACAACAGCCCGGAAACCCATCCGTGCCCAAAGCTTATCCCTCTGGTaGAGGAATTTCCCCACTCGTAAACACCAATCTTTTCCCAGGGCC | + |
Preference number: 5 (lower is better) Translates to: TTARKPIRAQSLSLW*RNFPTRKHQSFPRA Trigger: GGCCCTGGGAAAAGATTGGTGTTTACGAGTGGGGAAATTCCTGCACCAGAGGGATAAGCTTTGGGCACGGATGGGTTTCCGGGCTGTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS CCA 90 bp | CTCACAACAGCCCGGAAACCCATCCGTGCCCAAAGCTTATCCCTCTaGTGCAGGAATTTCCCCACTCGTAAACACCAATCTTTTCCCAGG | + |
Preference number: 5 (lower is better) Translates to: LTTARKPIRAQSLSL*CRNFPTRKHQSFPR Trigger: CCTGGGAAAAGATTGGTGTTTACGAGTGGGGAAATTCCTGCACCAGAGGGATAAGCTTTGGGCACGGATGGGTTTCCGGGCTGTTGTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS CCA 72 bp | GTGGGGGCGCCGGTCCCGAGTCCAAGCCCAGTGGAATaGCTCCTTTGCCATGACCTCCTCACAGCACTGGCG | + |
Preference number: 6 (lower is better) Translates to: VGAPVPSPSPVE*LLCHDLLTALA Trigger: CGCCAGTGCTGTGAGGAGGTCATGGCAAAGGAGCCATTCCACTGGGCTTGGACTCGGGACCGGCGCCCCCAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS CCA 72 bp | CCATGGTGGGGGCGCCGGTCCCGAGTCCAAGCCCAGTaGAATGGCTCCTTTGCCATGACCTCCTCACAGCAC | + |
Preference number: 6 (lower is better) Translates to: PWWGRRSRVQAQ*NGSFAMTSSQH Trigger: GTGCTGTGAGGAGGTCATGGCAAAGGAGCCATTCCACTGGGCTTGGACTCGGGACCGGCGCCCCCACCATGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS GCA 72 bp | TCCTCCAGAAGGCTGAGGAAGGCCTGGACCTCCTGGTaGTGGCGAAAACGGAGGAACCCATTGCCCCCACCT | + |
Preference number: 6 (lower is better) Translates to: SSRRLRKAWTSW*WRKRRNPLPPP Trigger: AGGTGGGGGCAATGGGTTCCTCCGTTTTCGCCAGCACCAGGAGGTCCAGGCCTTCCTCAGCCTTCTGGAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS CCA 72 bp | GATGACACAGGCTTAAGCAAGTGGCTGCTGCAGTGCTaGGGCAAACCACAGGGGGAACAGTGGGGCGGCGAG | + |
Preference number: 6 (lower is better) Translates to: DDTGLSKWLLQC*GKPQGEQWGGE Trigger: CTCGCCGCCCCACTGTTCCCCCTGTGGTTTGCCCCAGCACTGCAGCAGCCACTTGCTTAAGCCTGTGTCATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS GCA 72 bp | TGTTCTTCACCCTGCAGAGCTTCAGTGCCCAGGGCGTaGCGGAGGCTTTGGGAAGATGCGGAGGGAGTAGGT | + |
Preference number: 6 (lower is better) Translates to: CSSPCRASVPRA*RRLWEDAEGVG Trigger: ACCTACTCCCTCCGCATCTTCCCAAAGCCTCCGGCACGCCCTGGGCACTGAAGCTCTGCAGGGTGAAGAACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS TCA 72 bp | ACAGGGCCAAGAACAGGCTGCTGTGGGTATACTCGCTaGGCTTCAGGTGGGCGCGCTGGAAGTAGACCAGCA | + |
Preference number: 6 (lower is better) Translates to: TGPRTGCCGYTR*ASGGRAGSRPA Trigger: TGCTGGTCTACTTCCAGCGCGCCCACCTGAAGCTCAGCGAGTATACCCACAGCAGCCTGTTCTTGGCCCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS GCA 72 bp | GCACTGGCGGCTCACAACAGCCCGGAAACCCATCCGTaGCCAAAGCTTATCCCTCTGGTGCAGGAATTTCCC | + |
Preference number: 6 (lower is better) Translates to: ALAAHNSPETHP*PKLIPLVQEFP Trigger: GGGAAATTCCTGCACCAGAGGGATAAGCTTTGGGCACGGATGGGTTTCCGGGCTGTTGTGAGCCGCCAGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS CCA 72 bp | TCGTTTGCAAGGTACAGGGCCAAGAACAGGCTGCTGTaGGTATACTCGCTGAGCTTCAGGTGGGCGCGCTGG | + |
Preference number: 6 (lower is better) Translates to: SFARYRAKNRLL*VYSLSFRWARW Trigger: CCAGCGCGCCCACCTGAAGCTCAGCGAGTATACCCACAGCAGCCTGTTCTTGGCCCTGTACCTTGCAAACGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS CCA 72 bp | CGGAGGCTTTGGGAAGATGCGGAGGGAGTAGGTGCCTaGTTCCAGTTGCATCTGGGGAGGCAAGACGATGAG | + |
Preference number: 6 (lower is better) Translates to: RRLWEDAEGVGA*FQLHLGRQDDE Trigger: CTCATCGTCTTGCCTCCCCAGATGCAACTGGAACCAGGCACCTACTCCCTCCGCATCTTCCCAAAGCCTCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS CCA 72 bp | TGGTGGGGTCTTGGGAGTCACTCATCTCATAGGAGATaGAGATGGGGCAGGGTGACCCGAGCTCAGGAATGG | + |
Preference number: 6 (lower is better) Translates to: WWGLGSHSSHRR*RWGRVTRAQEW Trigger: CCATTCCTGAGCTCGGGTCACCCTGCCCCATCTCCATCTCCTATGAGATGAGTGACTCCCAAGACCCCACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377185.2 |
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CDS GCA 72 bp | CGGAAACCCATCCGTGCCCAAAGCTTATCCCTCTGGTaGAGGAATTTCCCCACTCGTAAACACCAATCTTTT | + |
Preference number: 6 (lower is better) Translates to: RKPIRAQSLSLW*RNFPTRKHQSF Trigger: AAAAGATTGGTGTTTACGAGTGGGGAAATTCCTGCACCAGAGGGATAAGCTTTGGGCACGGATGGGTTTCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377185.2 |