Pregenerated sensors for SPAM1 (Homo sapiens)
Ensembl gene IDs: ENSG00000106304Ensembl transcript IDs: ENST00000223028.11, ENST00000340011.9, ENST00000402183.3, ENST00000413927.5, ENST00000439500.5, ENST00000460182.5, ENST00000682466.1
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGCCAAGGGAAGAGGCCTaGAACACATTTTTCCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: EGRSIFVTCLLPTASRRVPREEA*NTFFPH Trigger: ATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGG...CACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| 3UTR GCA 72 bp | TCTGATTATCTTGAGGGAAGGTCTATCTTTGTAACTTaGCTTCTCCCCACAGCATCTAGGAGAGTGACTGCA | + |
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Preference number: 3 (lower is better) Translates to: SDYLEGRSIFVT*LLPTASRRVTA Trigger: TGCAGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTCAAGATAATCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | GAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGAAGACAAAATTCACTTaGGGCATTCCAGGCCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: EGRSIFVTCLLPTASRRVKTKFT*GIPGPE Trigger: CTCTGGGCCTGGAATGCCCCAAGTGAATTTTGTCTT...CACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | GAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGATCAAGGCAAGAAGTTaGCTGGTCTCAATGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: EGRSIFVTCLLPTASRRVIKARS*LVSMSS Trigger: GGAAGACATTGAGACCAGCCAACTTCTTGCCTTGAT...CACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | TTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTGCACTTAATACCTTCGGGGGCTTCCTATaGAAGAGAAGAGGCTCATAT | + |
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Preference number: 4 (lower is better) Translates to: FVTCLLPTASRRVTALNTFGGFL*KRRGSY Trigger: ATATGAGCCTCTTCTCTTTCATAGGAAGCCCCCGAA...GGTATTAAGTGCAGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | CTTGAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTATTTTGGAAACTCTaGTGGCTTCCCGAACTCGAT | + |
|
Preference number: 4 (lower is better) Translates to: LEGRSIFVTCLLPTASRRVFWKL*WLPELD Trigger: ATCGAGTTCGGGAAGCCATCAGAGTTTCCAAAATAC...TCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR GCA 90 bp | GGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTAATATTGTAACACCTTaGCCGGTGGCGTTTATTCGG | + |
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Preference number: 4 (lower is better) Translates to: GRSIFVTCLLPTASRRVTNIVTP*PVAFIR Trigger: CCGAATAAACGCCACCGGGCAAGGTGTTACAATATT...AGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR GCA 90 bp | TTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTGCACTTAATACCAGGTTTCCAGTTTCTTaGCCAAGTGGGTCTCCATTC | + |
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Preference number: 4 (lower is better) Translates to: FVTCLLPTASRRVTALNTRFPVS*PSGSPF Trigger: GAATGGAGACCCACTTGGGCAAGAAACTGGAAACCT...GGTATTAAGTGCAGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR GCA 90 bp | GGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTATGGGTAAAGAGCAGTaGTTTCATTCCACAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: GRSIFVTCLLPTASRRVTMGKEQ*FHSTTS Trigger: GCTGGTTGTGGAATGAAAGCACTGCTCTTTACCCAT...AGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR GCA 90 bp | GGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTAACTATGCGGGTATATaGAAAAACCGGAAGTGGACT | + |
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Preference number: 4 (lower is better) Translates to: GRSIFVTCLLPTASRRVTNYAGI*KNRKWT Trigger: AGTCCACTTCCGGTTTTTGCATATACCCGCATAGTT...AGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR GCA 90 bp | TCATTTCCTGTAAGCCAAGGGAAGAGGCCTGAAACACATTTTTCCCTCATGACTCTTATACACACTCCTTaGTCCTGGCAAAGCACTTGG | + |
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Preference number: 4 (lower is better) Translates to: SFPVSQGKRPETHFSLMTLIHTP*SWQSTW Trigger: CCAAGTGCTTTGCCAGGAGCAAGGAGTGTGTATAAG...AGTCATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGGCTTACAGGAAATGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR GCA 90 bp | CTTGAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGATCTATCTTTGTAACTTaGCTTCTCCCCACAGCATCT | + |
|
Preference number: 4 (lower is better) Translates to: LEGRSIFVTCLLPTASRRSIFVT*LLPTAS Trigger: AGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGA...TCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | TCATTTCCTGTAAGCCAAGGGAAGAGGCCTGAAACACATTTTTCCCTCATGACTAGTTTCTTGCCCAAGTaGGTCTCCATTCTTCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: SFPVSQGKRPETHFSLMTSFLPK*VSILPS Trigger: ACTGGGAAGAATGGAGACCCACTTGGGCAAGAAACT...AGTCATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGGCTTACAGGAAATGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | GAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGTCACAGTTACTCCTGTaGTTGAATCTATGTAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: EGRSIFVTCLLPTASRRVSQLLL*LNLCKD Trigger: ATCCTTACATAGATTCAATCACAGGAGTAACTGTGA...CACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | GGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTTACTTCGCATTATACTaGGGGTTCCCCATATTACAA | + |
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Preference number: 4 (lower is better) Translates to: GRSIFVTCLLPTASRRVTYFALY*GFPILQ Trigger: TTGTAATATGGGGAACCCTCAGTATAATGCGAAGTA...AGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | CTTGAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGACCACCTTTCTCAAGTTaGATAGCAAAATTATCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LEGRSIFVTCLLPTASRRPPFSS*IAKLSG Trigger: CCCAGATAATTTTGCTATTCAACTTGAGAAAGGTGG...TCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR GCA 90 bp | GAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGCAGGAAATCCTTCCCTaGCTTTTCAAATTCTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: EGRSIFVTCLLPTASRRVQEILP*LFKFLF Trigger: AAACAAGAATTTGAAAAGGCAGGGAAGGATTTCCTG...CACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | GAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGTTAGCTTTGTCCAGATaGTCTTGTAAGGAAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: EGRSIFVTCLLPTASRRVLALSR*SCKEIF Trigger: GAAGATTTCCTTACAAGACCATCTGGACAAAGCTAA...CACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | CTTGAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGAGTGTTCAAATAAATaGATGGGTAAAGAGCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: LEGRSIFVTCLLPTASRRECSNK*MGKEQC Trigger: GCACTGCTCTTTACCCATCCATTTATTTGAACACTC...TCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | CTTGAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTTCTTCTGTCTCCATaGGAGGTTTTAGAAAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LEGRSIFVTCLLPTASRRVLLSP*EVLEKH Trigger: ATGCTTTTCTAAAACCTCCCATGGAGACAGAAGAAC...TCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | TCATTTCCTGTAAGCCAAGGGAAGAGGCCTGAAACACATTTTTCCCTCATGACTTTGTGGCAGATAGTGTaGAGGGTGAAGCATTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SFPVSQGKRPETHFSLMTLWQIV*RVKHCR Trigger: TCTACAATGCTTCACCCTCCACACTATCTGCCACAA...AGTCATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGGCTTACAGGAAATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | TTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTGCACTTAATACCCAAAATTATCTGGGTTaGGGTGAAGATAGTCACTTG | + |
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Preference number: 4 (lower is better) Translates to: FVTCLLPTASRRVTALNTQNYLG*GEDSHL Trigger: CAAGTGACTATCTTCACCTCAACCCAGATAATTTTG...GGTATTAAGTGCAGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | TCATTTCCTGTAAGCCAAGGGAAGAGGCCTGAAACACATTTTTCCCTCATGACTGTTTTCCACGTACTGTaGACTTTCCACCTTTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: SFPVSQGKRPETHFSLMTVFHVL*TFHLSQ Trigger: TTGAGAAAGGTGGAAAGTTCACAGTACGTGGAAAAC...AGTCATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGGCTTACAGGAAATGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR GCA 90 bp | CTTGAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGACCTTACAACTCAAGGTaGTATAACAGCTGCAATAAA | + |
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Preference number: 4 (lower is better) Translates to: LEGRSIFVTCLLPTASRRPYNSR*YNSCNK Trigger: TTTATTGCAGCTGTTATAGCACCTTGAGTTGTAAGG...TCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | TCAGATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAACACACTCCTTGCTCCTaGCAAAGCACTTGGCTACAC | + |
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Preference number: 4 (lower is better) Translates to: SDSQSLHDVKKVKDNTMKHTPCS*QSTWLH Trigger: GTGTAGCCAAGTGCTTTGCCAGGAGCAAGGAGTGTG...TTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | TCAGATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAACTTCCAGCCTCCAAATaGACATTGTGGCAGATAGTG | + |
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Preference number: 4 (lower is better) Translates to: SDSQSLHDVKKVKDNTMKLPASK*TLWQIV Trigger: CACTATCTGCCACAATGTTCATTTGGAGGCTGGAAG...TTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | GATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAATCCCAAGGGAAGAGGCCTaGAACACATTTTTCCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: DSQSLHDVKKVKDNTMKIPREEA*NTFFPH Trigger: ATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGG...GATTTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | TCATTTCCTGTAAGCCAAGGGAAGAGGCCTGAAACACATTTTTCCCTCATGACTTCTTCCTACACACTTTaGTTTACCCAATATCTGATG | + |
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Preference number: 4 (lower is better) Translates to: SFPVSQGKRPETHFSLMTSSYTL*FTQYLM Trigger: CATCAGATATTGGGTAAACCAAAGTGTGTAGGAAGA...AGTCATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGGCTTACAGGAAATGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | TCAGATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAATGTAAGGAAATCTTCTaGGGGATTCCTCCATTCACA | + |
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Preference number: 4 (lower is better) Translates to: SDSQSLHDVKKVKDNTMKCKEIF*GIPPFT Trigger: TGTGAATGGAGGAATCCCCCAGAAGATTTCCTTACA...TTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | GATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAATCCTGGGATACTCCACTTaGTTTAACAAAGCTTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: DSQSLHDVKKVKDNTMKILGYST*FNKASE Trigger: TTCAGAAGCTTTGTTAAATCAAGTGGAGTATCCCAG...GATTTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | GATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAATCCACATTTTTCCCTCATaGCTCTCAGAAGAAACCAAT | + |
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Preference number: 4 (lower is better) Translates to: DSQSLHDVKKVKDNTMKIHIFPS*LSEETN Trigger: ATTGGTTTCTTCTGAGAGTCATGAGGGAAAAATGTG...GATTTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | TCAGATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAATGCAAAAACCGGAAGTaGACTTTTTGCATCAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: SDSQSLHDVKKVKDNTMKCKNRK*TFCIRY Trigger: ATACCTGATGCAAAAAGTCCACTTCCGGTTTTTGCA...TTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATCTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR TCA 90 bp | TCAGATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAACATTCCACAACCAGCTaGGATCATCATTTCTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: SDSQSLHDVKKVKDNTMKHSTTS*DHHFFL Trigger: TAAAAAGAAATGATGATCTCAGCTGGTTGTGGAATG...TTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATCTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | GATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAATCAAGGTGAAAACTATCTaGGATACTCCACTTGATTTA | + |
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Preference number: 4 (lower is better) Translates to: DSQSLHDVKKVKDNTMKIKVKTI*DTPLDL Trigger: TAAATCAAGTGGAGTATCCCAGATAGTTTTCACCTT...GATTTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CCA 90 bp | GATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAATCAATAGCAAAATTATCTaGGTTGAGGTGAAGATAGTC | + |
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Preference number: 4 (lower is better) Translates to: DSQSLHDVKKVKDNTMKINSKII*VEVKIV Trigger: GACTATCTTCACCTCAACCCAGATAATTTTGCTATT...GATTTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | GAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGCTCCTGGCAAAGCACTaGGCTACACATTTTGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: EGRSIFVTCLLPTASRRVLLAKH*ATHFGC Trigger: GCAGCCAAAATGTGTAGCCAAGTGCTTTGCCAGGAG...CACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS GCA 90 bp | GGCATTCCAGGCCCAGAGGAAAGGCACATTTGGAATAACAGGAGGTaGTCTGAAATTCAGAGTCAAGCAACATGGAATCAGAAGGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: GIPGPEERHIWNNRR*SEIQSQATWNQKEG Trigger: ACCTTCCTTCTGATTCCATGTTGCTTGACTCTGAATTTCAGAGCACCTCCTGTTATTCCAAATGTGCCTTTCCTCTGGGCCTGGAATGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000413927.5 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS-3UTR CAA 90 bp | GGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTACTTGGCTACACATTTaGGCTGCTAGTGTGACGTTG | + |
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Preference number: 5 (lower is better) Translates to: GRSIFVTCLLPTASRRVTTWLHI*AASVTL Trigger: CAACGTCACACTAGCAGCCAAAATGTGTAGCCAAGT...AGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | TTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTGCACTTAATACCCCTTATACACACTCCTaGCTCCTGGCAAAGCACTTG | + |
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Preference number: 5 (lower is better) Translates to: FVTCLLPTASRRVTALNTPYTHS*LLAKHL Trigger: CAAGTGCTTTGCCAGGAGCAAGGAGTGTGTATAAGG...GGTATTAAGTGCAGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | GGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTAACCCCACAAGTGATTaGGCCGAAGTAATTTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: GRSIFVTCLLPTASRRVTNPTSD*AEVIFP Trigger: TGGGAAAATTACTTCGGCCAAATCACTTGTGGGGTT...AGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | CTTGAGGGAAGGTCTATCTTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGACCGGAAGTGGACTTTTaGCATCAGGTATTTTGGAAA | + |
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Preference number: 5 (lower is better) Translates to: LEGRSIFVTCLLPTASRRPEVDF*HQVFWK Trigger: TTTCCAAAATACCTGATGCAAAAAGTCCACTTCCGG...TCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGACCTTCCCTCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | TCATTTCCTGTAAGCCAAGGGAAGAGGCCTGAAACACATTTTTCCCTCATGACTAAATATTGTAACACCTaGCCCGGTGGCGTTTATTCG | + |
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Preference number: 5 (lower is better) Translates to: SFPVSQGKRPETHFSLMTKYCNT*PGGVYS Trigger: CGAATAAACGCCACCGGGCAAGGTGTTACAATATTT...AGTCATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGGCTTACAGGAAATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS TCA 90 bp | AAGTCAATTAGACCCTATGGCATCAGGCATGTCCCCATTCCTGTATaGAGTAGTCACAGCTGGTGCCTTAATTGGCAAATTCAGTATTCT | + |
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Preference number: 5 (lower is better) Translates to: KSIRPYGIRHVPIPV*SSHSWCLNWQIQYS Trigger: AGAATACTGAATTTGCCAATTAAGGCACCAGCTGTGACTACTTCATACAGGAATGGGGACATGCCTGATGCCATAGGGTCTAATTGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439500.5 |
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| CDS TCA 90 bp | TTTTTCCCTCATGACTCTCAGAAGAAACCAATTCTGCTAATACCTTaGTCCCAGACTTCCAGCCTCCAAATGAACATTGTGGCAGATAGT | + |
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Preference number: 5 (lower is better) Translates to: FFPHDSQKKPILLIP*SQTSSLQMNIVADS Trigger: ACTATCTGCCACAATGTTCATTTGGAGGCTGGAAGTCTGGGATCAAGGTATTAGCAGAATTGGTTTCTTCTGAGAGTCATGAGGGAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | TTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTGCACTTAATACCTTCTTCCTACACACTTaGGTTTACCCAATATCTGAT | + |
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Preference number: 5 (lower is better) Translates to: FVTCLLPTASRRVTALNTFFLHT*VYPISD Trigger: ATCAGATATTGGGTAAACCAAAGTGTGTAGGAAGAA...GGTATTAAGTGCAGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | TTTGTAACTTGCCTTCTCCCCACAGCATCTAGGAGAGTGACTGCACTTAATACCCTGAAAAAGATGTGCTaGAATTTTAGCACTCCCATT | + |
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Preference number: 5 (lower is better) Translates to: FVTCLLPTASRRVTALNTLKKMC*NFSTPI Trigger: AATGGGAGTGCTAAAATTCAAGCACATCTTTTTCAG...GGTATTAAGTGCAGTCACTCTCCTAGATGCTGTGGGGAGAAGGCAAGTTACAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS CCA 90 bp | ATGTCTTTCTTAGCTTTGTCCAGATGGTCTTGTAAGGAAATCTTCTaGGGGATTCCTCCATTCACAGTTACTCCTGTGATTGAATCTATG | + |
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Preference number: 5 (lower is better) Translates to: MSFLALSRWSCKEIF*GIPPFTVTPVIESM Trigger: CATAGATTCAATCACAGGAGTAACTGTGAATGGAGGAATCCCCCAGAAGATTTCCTTACAAGACCATCTGGACAAAGCTAAGAAAGACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS-3UTR CAA 90 bp | TCAGATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAGTCTATCTTTGTAACTaGCCTTCTCCCCACAGCATC | + |
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Preference number: 5 (lower is better) Translates to: SDSQSLHDVKKVKDNTMKVYLCN*PSPHSI Trigger: GATGCTGTGGGGAGAAGGCAAGTTACAAAGATAGAC...TTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | TCAGATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAATATCAAGGCAAGAAGTaGGCTGGTCTCAATGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SDSQSLHDVKKVKDNTMKYQGKK*AGLNVF Trigger: GAAGACATTGAGACCAGCCAACTTCTTGCCTTGATA...TTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS TCA 90 bp | GTAAGGAAATCTTCTGGGGGATTCCTCCATTCACAGTTACTCCTGTaGTTGAATCTATGTAAGGATAGTAGCCAAGTCTATCAACATAAA | + |
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Preference number: 5 (lower is better) Translates to: VRKSSGGFLHSQLLL*LNLCKDSSQVYQHK Trigger: TTTATGTTGATAGACTTGGCTACTATCCTTACATAGATTCAATCACAGGAGTAACTGTGAATGGAGGAATCCCCCAGAAGATTTCCTTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS-3UTR CAA 90 bp | GATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAATCTTTGCATCAGGTATTTaGGAAACTCTGATGGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: DSQSLHDVKKVKDNTMKIFASGI*ETLMAS Trigger: GGAAGCCATCAGAGTTTCCAAAATACCTGATGCAAA...GATTTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS TCA 90 bp | GGAAATCTTCTGGGGGATTCCTCCATTCACAGTTACTCCTGTGATTaGATCTATGTAAGGATAGTAGCCAAGTCTATCAACATAAAATAT | + |
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Preference number: 5 (lower is better) Translates to: GNLLGDSSIHSYSCD*IYVRIVAKSINIKY Trigger: ATATTTTATGTTGATAGACTTGGCTACTATCCTTACATAGATTCAATCACAGGAGTAACTGTGAATGGAGGAATCCCCCAGAAGATTTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS-3UTR CAA 90 bp | GATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAATCATGTCTTTCTTAGCTTaGTCCAGATGGTCTTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: DSQSLHDVKKVKDNTMKIMSFLA*SRWSCK Trigger: CTTACAAGACCATCTGGACAAAGCTAAGAAAGACAT...GATTTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS-3UTR CAA 90 bp | GATTCCCAAAGCCTCCATGATGTCAAAAAGGTTAAGGATAATACCATGAAAATCGGTGAAGATAGTCACTaGAATTCCAGTTTTTCCTTA | + |
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Preference number: 5 (lower is better) Translates to: DSQSLHDVKKVKDNTMKIGEDSH*NSSFSL Trigger: TAAGGAAAAACTGGAATTCAAGTGACTATCTTCACC...GATTTTCATGGTATTATCCTTAACCTTTTTGACATCATGGAGGCTTTGGGAATC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS TCA 72 bp | CACCTTGCCCGGTGGCGTTTATTCGGGGGCTTCCTATaGAAGAGAAGAGGCTCATATCTAGTGGCTCATCAA | + |
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Preference number: 6 (lower is better) Translates to: HLARWRLFGGFL*KRRGSYLVAHQ Trigger: TTGATGAGCCACTAGATATGAGCCTCTTCTCTTTCATAGGAAGCCCCCGAATAAACGCCACCGGGCAAGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS CAA 72 bp | GCAAAAACCGGAAGTGGACTTTTTGCATCAGGTATTTaGGAAACTCTGATGGCTTCCCGAACTCGATTGCGC | + |
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Preference number: 6 (lower is better) Translates to: AKTGSGLFASGI*ETLMASRTRLR Trigger: GCGCAATCGAGTTCGGGAAGCCATCAGAGTTTCCAAAATACCTGATGCAAAAAGTCCACTTCCGGTTTTTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS TCA 72 bp | GAAGTGGACTTTTTGCATCAGGTATTTTGGAAACTCTaGTGGCTTCCCGAACTCGATTGCGCACATAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: EVDFLHQVFWKL*WLPELDCAHRV Trigger: CACTCTATGTGCGCAATCGAGTTCGGGAAGCCATCAGAGTTTCCAAAATACCTGATGCAAAAAGTCCACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS TCA 72 bp | GCCAAGGGAAGAGGCCTGAAACACATTTTTCCCTCATaGCTCTCAGAAGAAACCAATTCTGCTAATACCTTG | + |
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Preference number: 6 (lower is better) Translates to: AKGRGLKHIFPS*LSEETNSANTL Trigger: CAAGGTATTAGCAGAATTGGTTTCTTCTGAGAGTCATGAGGGAAAAATGTGTTTCAGGCCTCTTCCCTTGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000340011.9 |
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| CDS CCA 72 bp | GAATTCCAGTTTTTCCTTATACACACTCCTTGCTCCTaGCAAAGCACTTGGCTACACATTTTGGCTGCTAGT | + |
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Preference number: 6 (lower is better) Translates to: EFQFFLIHTPCS*QSTWLHILAAS Trigger: ACTAGCAGCCAAAATGTGTAGCCAAGTGCTTTGCCAGGAGCAAGGAGTGTGTATAAGGAAAAACTGGAATTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS CAA 72 bp | ACCCAATGTCTCTTCAGTAGTTATCAAGGCAAGAAGTaGGCTGGTCTCAATGTCTTCCTAGAGCATTGGCTA | + |
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Preference number: 6 (lower is better) Translates to: TQCLFSSYQGKK*AGLNVFLEHWL Trigger: TAGCCAATGCTCTAGGAAGACATTGAGACCAGCCAACTTCTTGCCTTGATAACTACTGAAGAGACATTGGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000413927.5 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS CAA 72 bp | GTAGCCAAGTCTATCAACATAAAATATTGTAACACCTaGCCCGGTGGCGTTTATTCGGGGGCTTCCTATGAA | + |
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Preference number: 6 (lower is better) Translates to: VAKSINIKYCNT*PGGVYSGASYE Trigger: TTCATAGGAAGCCCCCGAATAAACGCCACCGGGCAAGGTGTTACAATATTTTATGTTGATAGACTTGGCTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS TCA 72 bp | CTAGGAGCAAGCAAGATTTCATACTTCGCATTATACTaGGGGTTCCCCATATTACAATTCCAGAAGCACCCA | + |
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Preference number: 6 (lower is better) Translates to: LGASKISYFALY*GFPILQFQKHP Trigger: TGGGTGCTTCTGGAATTGTAATATGGGGAACCCTCAGTATAATGCGAAGTATGAAATCTTGCTTGCTCCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS GCA 72 bp | TCACTTGAATTCCAGTTTTTCCTTATACACACTCCTTaGTCCTGGCAAAGCACTTGGCTACACATTTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: SLEFQFFLIHTP*SWQSTWLHILA Trigger: AGCCAAAATGTGTAGCCAAGTGCTTTGCCAGGAGCAAGGAGTGTGTATAAGGAAAAACTGGAATTCAAGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS CCA 72 bp | TTAGCTTTGTCCAGATGGTCTTGTAAGGAAATCTTCTaGGGGATTCCTCCATTCACAGTTACTCCTGTGATT | + |
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Preference number: 6 (lower is better) Translates to: LALSRWSCKEIF*GIPPFTVTPVI Trigger: AATCACAGGAGTAACTGTGAATGGAGGAATCCCCCAGAAGATTTCCTTACAAGACCATCTGGACAAAGCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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| CDS CAA 72 bp | TTTCTCAGTGGCCTCTGTGAGACTAAGTTGTACATTTaGTTGCTGAACCAATTCAATAGACCTATTCTTGTA | + |
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Preference number: 6 (lower is better) Translates to: FLSGLCETKLYI*LLNQFNRPILV Trigger: TACAAGAATAGGTCTATTGAATTGGTTCAGCAACAAAATGTACAACTTAGTCTCACAGAGGCCACTGAGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000223028.11 ENST00000340011.9 ENST00000402183.3 ENST00000439500.5 ENST00000460182.5 ENST00000682466.1 |
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