Pregenerated sensors for SOD1 (Homo sapiens)
Ensembl gene IDs: ENSG00000142168Ensembl transcript IDs: ENST00000270142.11, ENST00000389995.4, ENST00000470944.1, ENST00000476106.5
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGCGGGCCCAGGCGCAGTCGCCATCCCCGGGCTGGGCCTGGCACTaGGCCACTCGGTGTCCGCGGGACCCTCAGGAACGAGAACACGGC | + |
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Preference number: 5 (lower is better) Translates to: RRAQAQSPSPGWAWH*ATRCPRDPQEREHG Trigger: GCCGTGTTCTCGTTCCTGAGGGTCCCGCGGACACCGAGTGGCGCAGTGCCAGGCCCAGCCCGGGGATGGCGACTGCGCCTGGGCCCGCCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS CCA 90 bp | TGCGAAGACACCAGGCGGGCCCAGGCGCAGTCGCCATCCCCGGGCTaGGCCTGGCACTGCGCCACTCGGTGTCCGCGGGACCCTCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: CEDTRRAQAQSPSPG*AWHCATRCPRDPQE Trigger: TTCCTGAGGGTCCCGCGGACACCGAGTGGCGCAGTGCCAGGCCCAGCCCGGGGATGGCGACTGCGCCTGGGCCCGCCTGGTGTCTTCGCA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS GCA 90 bp | GAGCGGGTGGGAGCGGCCTCGCAAACAAGCCTCCGTCCCAGCCCTTaGCTTCTGCTCGAAATTGATGATGCCCTGCACTGGGCCGTCGCC | + |
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Preference number: 5 (lower is better) Translates to: ERVGAASQTSLRPSP*LLLEIDDALHWAVA Trigger: GGCGACGGCCCAGTGCAGGGCATCATCAATTTCGAGCAGAAGGCAAGGGCTGGGACGGAGGCTTGTTTGCGAGGCCGCTCCCACCCGCTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS GCA 90 bp | CGCCGAGGTCCTGGTTCCGAGGACTGCAACGGAAACCCCAGACGCTaGAGGAGACTACGACGCAAACCAGCACCCCGTCTCCGCGACTAC | + |
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Preference number: 5 (lower is better) Translates to: RRGPGSEDCNGNPRR*RRLRRKPAPRLRDY Trigger: GTAGTCGCGGAGACGGGGTGCTGGTTTGCGTCGTAGTCTCCTGCAGCGTCTGGGGTTTCCGTTGCAGTCCTCGGAACCAGGACCTCGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000389995.4 |
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| CDS GCA 90 bp | TGGGAGCGGCCTCGCAAACAAGCCTCCGTCCCAGCCCTTGCCTTCTaGTCGAAATTGATGATGCCCTGCACTGGGCCGTCGCCCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: WERPRKQASVPALAF*SKLMMPCTGPSPFS Trigger: GCTGAAGGGCGACGGCCCAGTGCAGGGCATCATCAATTTCGAGCAGAAGGCAAGGGCTGGGACGGAGGCTTGTTTGCGAGGCCGCTCCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS CAA 90 bp | CTCGGTCCCACGCCCCGCGCCCGGGCCCGCCCGGTGACTCAGCACTaGGGCACCGCACCGCTGGGGGCGAAGGCACCGACCGGGCGGCAC | + |
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Preference number: 6 (lower is better) Translates to: LGPTPRARARPVTQH*GTAPLGAKAPTGRH Trigger: GTGCCGCCCGGTCGGTGCCTTCGCCCCCAGCGGTGCGGTGCCCAAGTGCTGAGTCACCGGGCGGGCCCGGGCGCGGGGCGTGGGACCGAG 80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS CAA 72 bp | ACGCCCCGCGCCCGGGCCCGCCCGGTGACTCAGCACTaGGGCACCGCACCGCTGGGGGCGAAGGCACCGACC | + |
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Preference number: 6 (lower is better) Translates to: TPRARARPVTQH*GTAPLGAKAPT Trigger: GGTCGGTGCCTTCGCCCCCAGCGGTGCGGTGCCCAAGTGCTGAGTCACCGGGCGGGCCCGGGCGCGGGGCGT 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS GCA 72 bp | CAGGCGCAGTCGCCATCCCCGGGCTGGGCCTGGCACTaGGCCACTCGGTGTCCGCGGGACCCTCAGGAACGA | + |
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Preference number: 6 (lower is better) Translates to: QAQSPSPGWAWH*ATRCPRDPQER Trigger: TCGTTCCTGAGGGTCCCGCGGACACCGAGTGGCGCAGTGCCAGGCCCAGCCCGGGGATGGCGACTGCGCCTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS GCA 72 bp | CTCGCTAGGCCACGCCGAGGTCCTGGTTCCGAGGACTaGAACGGAAACCCCAGACGCTGCAGGAGACTACGA | + |
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Preference number: 6 (lower is better) Translates to: LARPRRGPGSED*NGNPRRCRRLR Trigger: TCGTAGTCTCCTGCAGCGTCTGGGGTTTCCGTTGCAGTCCTCGGAACCAGGACCTCGGCGTGGCCTAGCGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000270142.11 ENST00000389995.4 ENST00000476106.5 |
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| CDS GCA 72 bp | CCTGGTTCCGAGGACTGCAACGGAAACCCCAGACGCTaGAGGAGACTACGACGCAAACCAGCACCCCGTCTC | + |
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Preference number: 6 (lower is better) Translates to: PGSEDCNGNPRR*RRLRRKPAPRL Trigger: GAGACGGGGTGCTGGTTTGCGTCGTAGTCTCCTGCAGCGTCTGGGGTTTCCGTTGCAGTCCTCGGAACCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000389995.4 |
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| CDS GCA 72 bp | GGAGCGGCCTCGCAAACAAGCCTCCGTCCCAGCCCTTaGCTTCTGCTCGAAATTGATGATGCCCTGCACTGG | + |
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Preference number: 6 (lower is better) Translates to: GAASQTSLRPSP*LLLEIDDALHW Trigger: CCAGTGCAGGGCATCATCAATTTCGAGCAGAAGGCAAGGGCTGGGACGGAGGCTTGTTTGCGAGGCCGCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS GCA 72 bp | TGCTTCCCCACACCTTCACTGGTCCATTACTTTCCCTaGACTAGGACAGGTTTTGATGTAATTGGTCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: CFPTPSLVHYFP*TRTGFDVIGRR Trigger: CCTCCGACCAATTACATCAAAACCTGTCCTAGTGCAGGGAAAGTAATGGACCAGTGAAGGTGTGGGGAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS CCA 72 bp | TTCAGTCAGTCCTTTAATGCTTCCCCACACCTTCACTaGTCCATTACTTTCGGCCTTCGTCGCCATAACTCG | + |
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Preference number: 6 (lower is better) Translates to: FSQSFNASPHLH*SITFGLRRHNS Trigger: CGAGTTATGGCGACGAAGGCCGAAAGTAATGGACCAGTGAAGGTGTGGGGAAGCATTAAAGGACTGACTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000389995.4 |
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| CDS CCA 72 bp | TTCAGTCAGTCCTTTAATGCTTCCCCACACCTTCACTaGTCCATTACTTTCCCTGCACTAGGACAGGTTTTG | + |
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Preference number: 6 (lower is better) Translates to: FSQSFNASPHLH*SITFPALGQVL Trigger: CAAAACCTGTCCTAGTGCAGGGAAAGTAATGGACCAGTGAAGGTGTGGGGAAGCATTAAAGGACTGACTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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| CDS CCA 72 bp | TTCAGTCAGTCCTTTAATGCTTCCCCACACCTTCACTaGTCCATTACTTTCCTGGGTTCATGCATGGATTCT | + |
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Preference number: 6 (lower is better) Translates to: FSQSFNASPHLH*SITFLGSCMDS Trigger: AGAATCCATGCATGAACCCAGGAAAGTAATGGACCAGTGAAGGTGTGGGGAAGCATTAAAGGACTGACTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476106.5 |
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| CDS CAA 72 bp | TGCACTAGGACAGGTTTTGATGTAATTGGTCGGAGGTaGGGCTCTGGTGTATTTTTAGTAAGATCTTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: CTRTGFDVIGRR*GSGVFLVRSSN Trigger: ATTTGAAGATCTTACTAAAAATACACCAGAGCCCAACCTCCGACCAATTACATCAAAACCTGTCCTAGTGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000470944.1 |
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