Pregenerated sensors for SOCS5 (Homo sapiens)
Ensembl gene IDs: ENSG00000171150Ensembl transcript IDs: ENST00000568862.1, ENST00000650009.1
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGAGCTCTGGAGCTGGCAGCCAGGCGCTCAGTGCTCGCACAGGTaGAGGCCTGCAGGATTCAGAGTCGAAGATCTGAGTGGGAATCCT | + |
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Preference number: 1 (lower is better) Translates to: EELWSWQPGAQCSHR*RPAGFRVEDLSGNP Trigger: AGGATTCCCACTCAGATCTTCGACTCTGAATCCTGCAGGCCTTCACCTGTGCGAGCACTGAGCGCCTGGCTGCCAGCTCCAGAGCTCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR GCA 90 bp | CTGGAGCTGGCAGCCAGGCGCTCAGTGCTCGCACAGGTGAAGGCCTaGAGGATTCAGAGTCGAAGATCTGAGTGGGAATCCTGGCTCTGT | + |
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Preference number: 1 (lower is better) Translates to: LELAARRSVLAQVKA*RIQSRRSEWESWLC Trigger: ACAGAGCCAGGATTCCCACTCAGATCTTCGACTCTGAATCCTGCAGGCCTTCACCTGTGCGAGCACTGAGCGCCTGGCTGCCAGCTCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR TCA 90 bp | TCTTTGTTGAAATGGGAAACTCATACTTTCTCCACAGGATTGCTGTaGGCCCAAGCACATATGCTATGCCGGGCCCTGGGTTACGTATCT | + |
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Preference number: 1 (lower is better) Translates to: SLLKWETHTFSTGLL*AQAHMLCRALGYVS Trigger: AGATACGTAACCCAGGGCCCGGCATAGCATATGTGCTTGGGCTCACAGCAATCCTGTGGAGAAAGTATGAGTTTCCCATTTCAACAAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR-3UTR TCA 90 bp | AGAGAGTCACAGGTCCTTGGTGAAGGAAGTCATCTGCCTGTACAGGAACTGTCCTCAGAGTCGAAGATCTaGGTGGGAATCCTGGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: RESQVLGEGSHLPVQELSSESKI*VGILAL Trigger: CAGAGCCAGGATTCCCACTCAGATCTTCGACTCTGA...GGACAGTTCCTGTACAGGCAGATGACTTCCTTCACCAAGGACCTGTGACTCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR-3UTR GCA 90 bp | TTCAGTCTAAGCTGTCCATGTGCAGATGATGTCAGAGAAAGCCCTCAGGGAGAGGTGAAGGAAGTCATCTaGCTGTACAGGAACTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: FSLSCPCADDVRESPQGEVKEVI*LYRNCP Trigger: AGGACAGTTCCTGTACAGGCAGATGACTTCCTTCAC...CTCTCCCTGAGGGCTTTCTCTGACATCATCTGCACATGGACAGCTTAGACTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR-3UTR TCA 90 bp | GTGAAGGAAGTCATCTGCCTGTACAGGAACTGTCCTCCAGTAGACCAACGGAAACCTCACCTTCTTTGTTaGAATGGGAAACTCATACTT | + |
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Preference number: 2 (lower is better) Translates to: VKEVICLYRNCPPVDQRKPHLLC*NGKLIL Trigger: AAGTATGAGTTTCCCATTTCAACAAAGAAGGTGAGG...TTTCCGTTGGTCTACTGGAGGACAGTTCCTGTACAGGCAGATGACTTCCTTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR-3UTR CCA 90 bp | CTAAGCTGTCCATGTGCAGATGATGTCAGAGAAAGCCCTCAGGGAGAGAGTCACCCTTCTTTGTTGAAATaGGAAACTCATACTTTCTCC | + |
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Preference number: 2 (lower is better) Translates to: LSCPCADDVRESPQGESHPSLLK*ETHTFS Trigger: GGAGAAAGTATGAGTTTCCCATTTCAACAAAGAAGG...GTGACTCTCTCCCTGAGGGCTTTCTCTGACATCATCTGCACATGGACAGCTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR TCA 72 bp | TGGAGCTGGCAGCCAGGCGCTCAGTGCTCGCACAGGTaGAGGCCTGCAGGATTCAGAGTCGAAGATCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: WSWQPGAQCSHR*RPAGFRVEDLS Trigger: ACTCAGATCTTCGACTCTGAATCCTGCAGGCCTTCACCTGTGCGAGCACTGAGCGCCTGGCTGCCAGCTCCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR GCA 72 bp | GCAGCCAGGCGCTCAGTGCTCGCACAGGTGAAGGCCTaGAGGATTCAGAGTCGAAGATCTGAGTGGGAATCC | + |
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Preference number: 3 (lower is better) Translates to: AARRSVLAQVKA*RIQSRRSEWES Trigger: GGATTCCCACTCAGATCTTCGACTCTGAATCCTGCAGGCCTTCACCTGTGCGAGCACTGAGCGCCTGGCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR GCA 72 bp | GGAGAGAGTCACAGGTCCTTGGTGAAGGAAGTCATCTaGCTGTACAGGAACTGTCCTCCAGTAGACCAACGG | + |
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Preference number: 3 (lower is better) Translates to: GESHRSLVKEVI*LYRNCPPVDQR Trigger: CCGTTGGTCTACTGGAGGACAGTTCCTGTACAGGCAGATGACTTCCTTCACCAAGGACCTGTGACTCTCTCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR TCA 72 bp | AAATGGGAAACTCATACTTTCTCCACAGGATTGCTGTaGGCCCAAGCACATATGCTATGCCGGGCCCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: KWETHTFSTGLL*AQAHMLCRALG Trigger: ACCCAGGGCCCGGCATAGCATATGTGCTTGGGCTCACAGCAATCCTGTGGAGAAAGTATGAGTTTCCCATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR-3UTR CAA 90 bp | TTCAGAGTCGAAGATCTGAGTGGGAATCCTGGCTCTGTTCCAGAGCAAATCTTGGCCTCACCTTCTTTGTaGAAATGGGAAACTCATACT | + |
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Preference number: 3 (lower is better) Translates to: FRVEDLSGNPGSVPEQILASPSL*KWETHT Trigger: AGTATGAGTTTCCCATTTCAACAAAGAAGGTGAGGC...CAAGATTTGCTCTGGAACAGAGCCAGGATTCCCACTCAGATCTTCGACTCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR CCA 90 bp | CACAGGTCCTTGGTGAAGGAAGTCATCTGCCTGTACAGGAACTGTCCTCCAGTACACGCGAATGAGCTCTaGCCAGGGAGCCACCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: HRSLVKEVICLYRNCPPVHANEL*PGSHQE Trigger: CTCTTGGTGGCTCCCTGGCCAGAGCTCATTCGCGTG...TACTGGAGGACAGTTCCTGTACAGGCAGATGACTTCCTTCACCAAGGACCTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR CCA 90 bp | AGAGCAAATCTTGAGCAACTTCCTTTCCCTCTAAGCCTCACCTTCTTTGTTGAAGCCCCAGAGGAGCTCTaGAGCTGGCAGCCAGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: RANLEQLPFPLSLTFFVEAPEEL*SWQPGA Trigger: AGCGCCTGGCTGCCAGCTCCAGAGCTCCTCTGGGGC...TTCAACAAAGAAGGTGAGGCTTAGAGGGAAAGGAAGTTGCTCAAGATTTGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| 3UTR CAA 72 bp | GGAAGCTGGGGTATTTCCACTCAATCTGGGCTCTTATaGTTAGAGAGGTGCCTCTGGAAGGCATCGAACCCC | + |
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Preference number: 4 (lower is better) Translates to: GSWGISTQSGLL*LERCLWKASNP Trigger: GGGGTTCGATGCCTTCCAGAGGCACCTCTCTAACAATAAGAGCCCAGATTGAGTGGAAATACCCCAGCTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR TCA 90 bp | CACAGGTCCTTGGTGAAGGAAGTCATCTGCCTGTACAGGAACTGTCCTCCAGTATCAGAGTCGAAGATCTaGGTGGGAATCCTGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: HRSLVKEVICLYRNCPPVSESKI*VGILAL Trigger: CAGAGCCAGGATTCCCACTCAGATCTTCGACTCTGA...TACTGGAGGACAGTTCCTGTACAGGCAGATGACTTCCTTCACCAAGGACCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR CCA 90 bp | CTTCCTTTCCCTCTAAGCCTCACCTTCTTTGTTGAAATGGGAAACTCATACTTTGAGGAGCTCTGGAGCTaGCAGCCAGGCGCTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: LPFPLSLTFFVEMGNSYFEELWS*QPGAQC Trigger: GCACTGAGCGCCTGGCTGCCAGCTCCAGAGCTCCTC...AAAGTATGAGTTTCCCATTTCAACAAAGAAGGTGAGGCTTAGAGGGAAAGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR GCA 90 bp | GAAGTCATCTGCCTGTACAGGAACTGTCCTCCAGTAGACCAACGGAAAGTGTGCGTGAAGGAAGTCATCTaGCTGTACAGGAACTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: EVICLYRNCPPVDQRKVCVKEVI*LYRNCP Trigger: AGGACAGTTCCTGTACAGGCAGATGACTTCCTTCAC...GCACACTTTCCGTTGGTCTACTGGAGGACAGTTCCTGTACAGGCAGATGACTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR GCA 90 bp | AAGGAAGTCATCTGCCTGTACAGGAACTGTCCTCCAGTAGACCAACGGAAAGTGTTATTGTTAGAGAGGTaGCTCTGGAAGGCATCGAAC | + |
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Preference number: 4 (lower is better) Translates to: KEVICLYRNCPPVDQRKVLLLER*LWKASN Trigger: GTTCGATGCCTTCCAGAGGCACCTCTCTAACAATAA...CACTTTCCGTTGGTCTACTGGAGGACAGTTCCTGTACAGGCAGATGACTTCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR TCA 90 bp | TTCAGAGTCGAAGATCTGAGTGGGAATCCTGGCTCTGTTCCAGAGCAAATCTTGTTCCAGAGCAAATCTTaGGCAACTTCCTTTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: FRVEDLSGNPGSVPEQILFQSKS*ATSFPS Trigger: AGAGGGAAAGGAAGTTGCTCAAGATTTGCTCTGGAA...CAAGATTTGCTCTGGAACAGAGCCAGGATTCCCACTCAGATCTTCGACTCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR GCA 90 bp | AGAGCAAATCTTGAGCAACTTCCTTTCCCTCTAAGCCTCACCTTCTTTGTTGAAGCACAGGTGAAGGCCTaGAGGATTCAGAGTCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: RANLEQLPFPLSLTFFVEAQVKA*RIQSRR Trigger: TCTTCGACTCTGAATCCTGCAGGCCTTCACCTGTGC...TTCAACAAAGAAGGTGAGGCTTAGAGGGAAAGGAAGTTGCTCAAGATTTGCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR TCA 90 bp | TATTTCCACTCAATCTGGGCTCTTATTGTTAGAGAGGTGCCTCTGGAAGGCATCCCTCACCTTCTTTGTTaGAATGGGAAACTCATACTT | + |
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Preference number: 4 (lower is better) Translates to: YFHSIWALIVREVPLEGIPHLLC*NGKLIL Trigger: AAGTATGAGTTTCCCATTTCAACAAAGAAGGTGAGG...GATGCCTTCCAGAGGCACCTCTCTAACAATAAGAGCCCAGATTGAGTGGAAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR CCA 90 bp | AACTCATACTTTCTCCACAGGATTGCTGTGAGCCCAAGCACATATGCTATGCCGCCTTCTTTGTTGAAATaGGAAACTCATACTTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: NSYFLHRIAVSPSTYAMPPSLLK*ETHTFS Trigger: GGAGAAAGTATGAGTTTCCCATTTCAACAAAGAAGG...CGGCATAGCATATGTGCTTGGGCTCACAGCAATCCTGTGGAGAAAGTATGAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR CCA 90 bp | TGGGGTATTTCCACTCAATCTGGGCTCTTATTGTTAGAGAGGTGCCTCTGGAAGTATTTCCACTCAATCTaGGCTCTTATTGTTAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: WGISTQSGLLLLERCLWKYFHSI*ALIVRE Trigger: CTCTCTAACAATAAGAGCCCAGATTGAGTGGAAATA...CTTCCAGAGGCACCTCTCTAACAATAAGAGCCCAGATTGAGTGGAAATACCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS GCA 90 bp | GAGCATGACCTAGTGCAAGGCAGCTCTTTGAGCAAGGCAGCTCTTTaGAGGGAGGCGGCCCTTTGCAACAAGGCAGGCCCTGAAAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: EHDLVQGSSLSKAAL*REAALCNKAGPERA Trigger: GGCTCTTTCAGGGCCTGCCTTGTTGCAAAGGGCCGCCTCCCTGCAAAGAGCTGCCTTGCTCAAAGAGCTGCCTTGCACTAGGTCATGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CCA 90 bp | AGAGCCGATAGCTGGGGGCTGGCTGCTGACCAAGCTTTCAGTGGATaGGCAGCAAGTCCTTTAGAGGAAGGGGATCTAGGCTGTGCATCC | + |
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Preference number: 5 (lower is better) Translates to: RADSWGLAADQAFSG*AASPLEEGDLGCAS Trigger: GGATGCACAGCCTAGATCCCCTTCCTCTAAAGGACTTGCTGCCCATCCACTGAAAGCTTGGTCAGCAGCCAGCCCCCAGCTATCGGCTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS TCA 90 bp | CTCTCAGCTCTGGATATGGCTGTCTGCAAATATTCACAGCACCAGTaGCCTCCATTCCCTCAAGCTAAGCTCCATCTTCCTGCCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: LSALDMAVCKYSQHQ*PPFPQAKLHLPASV Trigger: CACAGAGGCAGGAAGATGGAGCTTAGCTTGAGGGAATGGAGGTCACTGGTGCTGTGAATATTTGCAGACAGCCATATCCAGAGCTGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS-3UTR CAA 90 bp | GTGAAGGAAGTCATCTGCCTGTACAGGAACTGTCCTCCAGTAGACCAACGGAAAGAGAGTCACAGGTCCTaGGTGAAGGAAGTCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: VKEVICLYRNCPPVDQRKESHRS*VKEVIC Trigger: GCAGATGACTTCCTTCACCAAGGACCTGTGACTCTC...TTTCCGTTGGTCTACTGGAGGACAGTTCCTGTACAGGCAGATGACTTCCTTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS-3UTR CAA 90 bp | CACAGGTCCTTGGTGAAGGAAGTCATCTGCCTGTACAGGAACTGTCCTCCAGTACAATCTGGGCTCTTATaGTTAGAGAGGTGCCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: HRSLVKEVICLYRNCPPVQSGLL*LERCLW Trigger: CCAGAGGCACCTCTCTAACAATAAGAGCCCAGATTG...TACTGGAGGACAGTTCCTGTACAGGCAGATGACTTCCTTCACCAAGGACCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS CCA 90 bp | CCACAGGATTGCTGTGAGCCCAAGCACATATGCTATGCCGGGCCCTaGGTTACGTATCTCTCAAAGATTATTCAGTTTACATTTCCACAC | + |
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Preference number: 5 (lower is better) Translates to: PQDCCEPKHICYAGP*VTYLSKIIQFTFPH Trigger: GTGTGGAAATGTAAACTGAATAATCTTTGAGAGATACGTAACCCAGGGCCCGGCATAGCATATGTGCTTGGGCTCACAGCAATCCTGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS GCA 90 bp | AAACTCATACTTTCTCCACAGGATTGCTGTGAGCCCAAGCACATATaGTATGCCGGGCCCTGGGTTACGTATCTCTCAAAGATTATTCAG | + |
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Preference number: 5 (lower is better) Translates to: KLILSPQDCCEPKHI*YAGPWVTYLSKIIQ Trigger: CTGAATAATCTTTGAGAGATACGTAACCCAGGGCCCGGCATAGCATATGTGCTTGGGCTCACAGCAATCCTGTGGAGAAAGTATGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS CCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCAGCCCTGGCTaGGAAAATGTTACAGGTTGGGTTCTCCAGAAACAGATAATGAAG | + |
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Preference number: 5 (lower is better) Translates to: VCVCVCVCVCVFSPG*ENVTGWVLQKQIMK Trigger: CTTCATTATCTGTTTCTGGAGAACCCAACCTGTAACATTTTCCCAGCCAGGGCTGAATACACACACACACACACACACACACACACACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CCA 90 bp | ACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCAGCCCTaGCTGGGAAAATGTTACAGGTTGGGTTCTCCAGAAACAGATAAT | + |
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Preference number: 5 (lower is better) Translates to: TCVCVCVCVCVCIQP*LGKCYRLGSPETDN Trigger: ATTATCTGTTTCTGGAGAACCCAACCTGTAACATTTTCCCAGCCAGGGCTGAATACACACACACACACACACACACACACACACACACGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS-3UTR CAA 90 bp | AAGGAAGTCATCTGCCTGTACAGGAACTGTCCTCCAGTAGACCAACGGAAAGTGGCCTCACCTTCTTTGTaGAAATGGGAAACTCATACT | + |
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Preference number: 5 (lower is better) Translates to: KEVICLYRNCPPVDQRKVASPSL*KWETHT Trigger: AGTATGAGTTTCCCATTTCAACAAAGAAGGTGAGGC...CACTTTCCGTTGGTCTACTGGAGGACAGTTCCTGTACAGGCAGATGACTTCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650009.1 |
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| CDS GCA 90 bp | AGTCTTGGAAGTCATATTTTACATAAGCATTATTCCACGTTATCCTaGAAAGAACTGGCCACCAGAGAGCCTGGTACTAAAGTGCGTAGC | + |
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Preference number: 5 (lower is better) Translates to: SLGSHILHKHYSTLS*KELATREPGTKVRS Trigger: GCTACGCACTTTAGTACCAGGCTCTCTGGTGGCCAGTTCTTTGCAGGATAACGTGGAATAATGCTTATGTAAAATATGACTTCCAAGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CCA 90 bp | AAAAAGAAAAGAACTATTCCAGTCTGTTCTTTCACCTCTCAGCTCTaGATATGGCTGTCTGCAAATATTCACAGCACCAGTGACCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: KKKRTIPVCSFTSQL*IWLSANIHSTSDLH Trigger: ATGGAGGTCACTGGTGCTGTGAATATTTGCAGACAGCCATATCCAGAGCTGAGAGGTGAAAGAACAGACTGGAATAGTTCTTTTCTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CAA 72 bp | CCTAGTGCAAGGCAGCTCTTTGAGCAAGGCAGCTCTTaGCAGGGAGGCGGCCCTTTGCAACAAGGCAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: PSARQLFEQGSS*QGGGPLQQGRP Trigger: GGGCCTGCCTTGTTGCAAAGGGCCGCCTCCCTGCAAAGAGCTGCCTTGCTCAAAGAGCTGCCTTGCACTAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS GCA 72 bp | CTAGTGCAAGGCAGCTCTTTGAGCAAGGCAGCTCTTTaGAGGGAGGCGGCCCTTTGCAACAAGGCAGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: LVQGSSLSKAAL*REAALCNKAGP Trigger: AGGGCCTGCCTTGTTGCAAAGGGCCGCCTCCCTGCAAAGAGCTGCCTTGCTCAAAGAGCTGCCTTGCACTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CCA 72 bp | AGCTGGGGGCTGGCTGCTGACCAAGCTTTCAGTGGATaGGCAGCAAGTCCTTTAGAGGAAGGGGATCTAGGC | + |
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Preference number: 6 (lower is better) Translates to: SWGLAADQAFSG*AASPLEEGDLG Trigger: GCCTAGATCCCCTTCCTCTAAAGGACTTGCTGCCCATCCACTGAAAGCTTGGTCAGCAGCCAGCCCCCAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CAA 72 bp | CCACCAGAAGAGCATGACCTAGTGCAAGGCAGCTCTTaGAGCAAGGCAGCTCTTTGCAGGGAGGCGGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: PPEEHDLVQGSS*SKAALCREAAL Trigger: AAGGGCCGCCTCCCTGCAAAGAGCTGCCTTGCTCAAAGAGCTGCCTTGCACTAGGTCATGCTCTTCTGGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS TCA 72 bp | CTCTGTGACAGGATGCAAGCTGCCACCAGAAGAGCATaGCCTAGTGCAAGGCAGCTCTTTGAGCAAGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: LCDRMQAATRRA*PSARQLFEQGS Trigger: GCTGCCTTGCTCAAAGAGCTGCCTTGCACTAGGTCATGCTCTTCTGGTGGCAGCTTGCATCCTGTCACAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS GCA 72 bp | GCTGTGCTTTCACACCCCTGCCTCTCTGTGACAGGATaGAAGCTGCCACCAGAAGAGCATGACCTAGTGCAA | + |
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Preference number: 6 (lower is better) Translates to: AVLSHPCLSVTG*KLPPEEHDLVQ Trigger: TTGCACTAGGTCATGCTCTTCTGGTGGCAGCTTGCATCCTGTCACAGAGAGGCAGGGGTGTGAAAGCACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS GCA 72 bp | GCCAGTCTAGCAGGAACTCTGGAGTGGATATTGTCCTaGAGAGCAAATGAGATGGCTGTGCTTTCACACCCC | + |
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Preference number: 6 (lower is better) Translates to: ASLAGTLEWILS*RANEMAVLSHP Trigger: GGGGTGTGAAAGCACAGCCATCTCATTTGCTCTGCAGGACAATATCCACTCCAGAGTTCCTGCTAGACTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS TCA 72 bp | AGGAACTCTGGAGTGGATATTGTCCTGCAGAGCAAATaGGATGGCTGTGCTTTCACACCCCTGCCTCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: RNSGVDIVLQSK*DGCAFTPLPLC Trigger: ACAGAGAGGCAGGGGTGTGAAAGCACAGCCATCTCATTTGCTCTGCAGGACAATATCCACTCCAGAGTTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS TCA 72 bp | CCACCAGAGAGCCTGGTACTAAAGTGCGTAGCAGCATaGTACGTCAGTTCAGGTAGTGCCCACAGTTATCAG | + |
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Preference number: 6 (lower is better) Translates to: PPESLVLKCVAA*YVSSGSAHSYQ Trigger: CTGATAACTGTGGGCACTACCTGAACTGACGTATCATGCTGCTACGCACTTTAGTACCAGGCTCTCTGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CCA 72 bp | AACAAGGTCTTGGCCAGTCTAGCAGGAACTCTGGAGTaGATATTGTCCTGCAGAGCAAATGAGATGGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: NKVLASLAGTLE*ILSCRANEMAV Trigger: CACAGCCATCTCATTTGCTCTGCAGGACAATATCCACTCCAGAGTTCCTGCTAGACTGGCCAAGACCTTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CAA 72 bp | GTCTTGGCCAGTCTAGCAGGAACTCTGGAGTGGATATaGTCCTGCAGAGCAAATGAGATGGCTGTGCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: VLASLAGTLEWI*SCRANEMAVLS Trigger: TGAAAGCACAGCCATCTCATTTGCTCTGCAGGACAATATCCACTCCAGAGTTCCTGCTAGACTGGCCAAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS TCA 72 bp | CTGGATATGGCTGTCTGCAAATATTCACAGCACCAGTaGCCTCCATTCCCTCAAGCTAAGCTCCATCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: LDMAVCKYSQHQ*PPFPQAKLHLP Trigger: AGGAAGATGGAGCTTAGCTTGAGGGAATGGAGGTCACTGGTGCTGTGAATATTTGCAGACAGCCATATCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CCA 72 bp | TGTGTGTGTGTGTGTGTGTGTGTATTCAGCCCTGGCTaGGAAAATGTTACAGGTTGGGTTCTCCAGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: CVCVCVCVFSPG*ENVTGWVLQKQ Trigger: CTGTTTCTGGAGAACCCAACCTGTAACATTTTCCCAGCCAGGGCTGAATACACACACACACACACACACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CCA 72 bp | TACATAAGCATTATTCCACGTTATCCTGCAAAGAACTaGCCACCAGAGAGCCTGGTACTAAAGTGCGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: YISIIPRYPAKN*PPESLVLKCVA Trigger: TGCTACGCACTTTAGTACCAGGCTCTCTGGTGGCCAGTTCTTTGCAGGATAACGTGGAATAATGCTTATGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CAA 72 bp | AGTAGAATGGGAAAGAAGTTGAATGGCAACAAGGTCTaGGCCAGTCTAGCAGGAACTCTGGAGTGGATATTG | + |
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Preference number: 6 (lower is better) Translates to: SRMGKKLNGNKV*ASLAGTLEWIL Trigger: CAATATCCACTCCAGAGTTCCTGCTAGACTGGCCAAGACCTTGTTGCCATTCAACTTCTTTCCCATTCTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CCA 72 bp | AGAACTATTCCAGTCTGTTCTTTCACCTCTCAGCTCTaGATATGGCTGTCTGCAAATATTCACAGCACCAGT | + |
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Preference number: 6 (lower is better) Translates to: RTIPVCSFTSQL*IWLSANIHSTS Trigger: ACTGGTGCTGTGAATATTTGCAGACAGCCATATCCAGAGCTGAGAGGTGAAAGAACAGACTGGAATAGTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CAA 72 bp | GTGTGTATTCAGCCCTGGCTGGGAAAATGTTACAGGTaGGGTTCTCCAGAAACAGATAATGAAGCAGAATTT | + |
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Preference number: 6 (lower is better) Translates to: VCIQPWLGKCYR*GSPETDNEAEF Trigger: AAATTCTGCTTCATTATCTGTTTCTGGAGAACCCAACCTGTAACATTTTCCCAGCCAGGGCTGAATACACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS GCA 72 bp | GTTCTCCAGAAACAGATAATGAAGCAGAATTTCGGGTaGAAAATTTTATTAGGGCTCAACACCTGTGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: VLQKQIMKQNFG*KILLGLNTCEG Trigger: TCCTTCACAGGTGTTGAGCCCTAATAAAATTTTGCACCCGAAATTCTGCTTCATTATCTGTTTCTGGAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS GCA 72 bp | AGTCATATTTTACATAAGCATTATTCCACGTTATCCTaGAAAGAACTGGCCACCAGAGAGCCTGGTACTAAA | + |
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Preference number: 6 (lower is better) Translates to: SHILHKHYSTLS*KELATREPGTK Trigger: TTTAGTACCAGGCTCTCTGGTGGCCAGTTCTTTGCAGGATAACGTGGAATAATGCTTATGTAAAATATGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CAA 72 bp | GCCAAAGCAATAATGCTGGGAGTGGGGAGTCTGAAGTaGAGAATTAGTCTTGGAAGTCATATTTTACATAAG | + |
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Preference number: 6 (lower is better) Translates to: AKAIMLGVGSLK*RISLGSHILHK Trigger: CTTATGTAAAATATGACTTCCAAGACTAATTCTCAACTTCAGACTCCCCACTCCCAGCATTATTGCTTTGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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| CDS CAA 90 bp | ATTACTAATGCCAAAGCAATAATGCTGGGAGTGGGGAGTCTGAAGTaGAGAATTAGTCTTGGAAGTCATATTTTACATAAGCATTATTCC | + |
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Preference number: 6 (lower is better) Translates to: ITNAKAIMLGVGSLK*RISLGSHILHKHYS Trigger: GGAATAATGCTTATGTAAAATATGACTTCCAAGACTAATTCTCAACTTCAGACTCCCCACTCCCAGCATTATTGCTTTGGCATTAGTAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568862.1 |
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