Pregenerated sensors for SNHG16 (Homo sapiens)
Ensembl gene IDs: ENSG00000163597Ensembl transcript IDs: ENST00000448136.5, ENST00000493536.6, ENST00000586846.2, ENST00000587743.1, ENST00000587838.2, ENST00000590435.5, ENST00000653677.1, ENST00000661348.1, ENST00000667091.1, ENST00000668511.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GATCTAGTTACTACCCACTTGCTCTTGGACTGGCCACATGATTCCTaGACTCCACTCCAGAGCCATTCTCACCCATGCCTGGAGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: DLVTTHLLLDWPHDS*TPLQSHSHPCLEVR Trigger: CCTCACCTCCAGGCATGGGTGAGAATGGCTCTGGAGTGGAGTCCAGGAATCATGTGGCCAGTCCAAGAGCAAGTGGGTAGTAACTAGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS TCA 90 bp | TCTTTCATCCCTGCATGCCCTAACGAGGATCCACGCTGGTTACAATaGCACCTAGTGGCCCCAAATCACACGGGCAAAGACGCTACTCAT | + |
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Preference number: 5 (lower is better) Translates to: SFIPACPNEDPRWLQ*HLVAPNHTGKDATH Trigger: ATGAGTAGCGTCTTTGCCCGTGTGATTTGGGGCCACTAGGTGTCATTGTAACCAGCGTGGATCCTCGTTAGGGCATGCAGGGATGAAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000448136.5 ENST00000587743.1 ENST00000668511.1 |
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| CDS TCA 90 bp | GTGAGGCCCAGGAATGTGTATATTTTAACACTTTGTAGGTGGCTCTaGTGTAATAATCAAGTTTGGAAATCACTAACCCTGTTTCACAAA | + |
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Preference number: 5 (lower is better) Translates to: VRPRNVYILTLCRWL*CNNQVWKSLTLFHK Trigger: TTTGTGAAACAGGGTTAGTGATTTCCAAACTTGATTATTACATCAGAGCCACCTACAAAGTGTTAAAATATACACATTCCTGGGCCTCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS TCA 72 bp | GTCTGCCCGTGCGCGGGCACCGAAGACCCCTGGGCATaGCGCTCAGCACACGCGCGGCGGAGGCGCACGGGG | + |
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Preference number: 6 (lower is better) Translates to: VCPCAGTEDPWA*RSAHARRRRTG Trigger: CCCCGTGCGCCTCCGCCGCGCGTGTGCTGAGCGTCATGCCCAGGGGTCTTCGGTGCCCGCGCACGGGCAGAC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000448136.5 ENST00000586846.2 ENST00000587743.1 ENST00000667091.1 |
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| CDS CAA 72 bp | GCACACGCGCGGCGGAGGCGCACGGGGCTGCCCAGGTaGTTAGGCGCTCTCCCCCGCAGAAGCCGGCCCTAT | + |
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Preference number: 6 (lower is better) Translates to: AHARRRRTGLPR*LGALPRRSRPY Trigger: ATAGGGCCGGCTTCTGCGGGGGAGAGCGCCTAACAACCTGGGCAGCCCCGTGCGCCTCCGCCGCGCGTGTGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000448136.5 ENST00000586846.2 ENST00000587743.1 ENST00000667091.1 |
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| CDS CAA 90 bp | GCGCTCTCCCCCGCAGAAGCCGGCCCTATGACGCCGAGGACGGGCTaGAGCTCTCTCCCTTCACATAGTAACATTTTCTCAACGTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: ALSPAEAGPMTPRTG*SSLPSHSNIFSTFG Trigger: TCCAAACGTTGAGAAAATGTTACTATGTGAAGGGAGAGAGCTCAAGCCCGTCCTCGGCGTCATAGGGCCGGCTTCTGCGGGGGAGAGCGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000448136.5 ENST00000586846.2 ENST00000587743.1 ENST00000667091.1 |
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| CDS CAA 72 bp | CCCGCAGAAGCCGGCCCTATGACGCCGAGGACGGGCTaGAGCTCTCTCCCTTCACATAGTAACATTTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: PAEAGPMTPRTG*SSLPSHSNIFS Trigger: TGAGAAAATGTTACTATGTGAAGGGAGAGAGCTCAAGCCCGTCCTCGGCGTCATAGGGCCGGCTTCTGCGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000448136.5 ENST00000586846.2 ENST00000587743.1 ENST00000667091.1 |
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| CDS TCA 72 bp | CCTGCATGCCCTAACGAGGATCCACGCTGGTTACAATaGCACCTAGTGGCCCCAAATCACACGGGCAAAGAC | + |
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Preference number: 6 (lower is better) Translates to: PACPNEDPRWLQ*HLVAPNHTGKD Trigger: GTCTTTGCCCGTGTGATTTGGGGCCACTAGGTGTCATTGTAACCAGCGTGGATCCTCGTTAGGGCATGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000448136.5 ENST00000587743.1 ENST00000668511.1 |
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| CDS CCA 72 bp | ACTACCCACTTGCTCTTGGACTGGCCACATGATTCCTaGACTCCACTCCAGAGCCATTCTCACCCATGCCTG | + |
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Preference number: 6 (lower is better) Translates to: TTHLLLDWPHDS*TPLQSHSHPCL Trigger: CAGGCATGGGTGAGAATGGCTCTGGAGTGGAGTCCAGGAATCATGTGGCCAGTCCAAGAGCAAGTGGGTAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS TCA 72 bp | TCTAGTTACTACCCACTTGCTCTTGGACTGGCCACATaGTTCCTGGACTCCACTCCAGAGCCATTCTCACCC | + |
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Preference number: 6 (lower is better) Translates to: SSYYPLALGLAT*FLDSTPEPFSP Trigger: GGGTGAGAATGGCTCTGGAGTGGAGTCCAGGAATCATGTGGCCAGTCCAAGAGCAAGTGGGTAGTAACTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS TCA 72 bp | ACATGGCTGGGAAGGCCTCACAATCATGGCGGAAGGTaGAAGCCACATCTCACATGGCAGCAGATAAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: TWLGRPHNHGGR*KPHLTWQQIRE Trigger: TTCTCTTATCTGCTGCCATGTGAGATGTGGCTTTCACCTTCCGCCATGATTGTGAGGCCTTCCCAGCCATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000448136.5 ENST00000493536.6 ENST00000586846.2 ENST00000587838.2 ENST00000590435.5 ENST00000653677.1 ENST00000661348.1 ENST00000667091.1 ENST00000668511.1 |
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| CDS CCA 72 bp | TTACAGTTCTACATGGCTGGGAAGGCCTCACAATCATaGCGGAAGGTGAAAGCCACATCTCACATGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LQFYMAGKASQS*RKVKATSHMAA Trigger: TGCTGCCATGTGAGATGTGGCTTTCACCTTCCGCCATGATTGTGAGGCCTTCCCAGCCATGTAGAACTGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000448136.5 ENST00000493536.6 ENST00000586846.2 ENST00000587838.2 ENST00000590435.5 ENST00000653677.1 ENST00000661348.1 ENST00000667091.1 ENST00000668511.1 |
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| CDS CAA 72 bp | ATTGACACCCCTGATCTAGTTACTACCCACTTGCTCTaGGACTGGCCACATGATTCCTGGACTCCACTCCAG | + |
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Preference number: 6 (lower is better) Translates to: IDTPDLVTTHLL*DWPHDSWTPLQ Trigger: CTGGAGTGGAGTCCAGGAATCATGTGGCCAGTCCAAGAGCAAGTGGGTAGTAACTAGATCAGGGGTGTCAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS TCA 72 bp | AGGGAGAAACCGAGATTATCGTCACCACTTCGTCTCTaGGGAAGGGAAGCCAAGTATGTTAGTGTCGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: REKPRLSSPLRL*GREAKYVSVVS Trigger: TGACACGACACTAACATACTTGGCTTCCCTTCCTCAGAGACGAAGTGGTGACGATAATCTCGGTTTCTCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000448136.5 ENST00000587743.1 |
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| CDS CAA 72 bp | CAAAAGATTGACACCCCTGATCTAGTTACTACCCACTaGCTCTTGGACTGGCCACATGATTCCTGGACTCCA | + |
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Preference number: 6 (lower is better) Translates to: QKIDTPDLVTTH*LLDWPHDSWTP Trigger: TGGAGTCCAGGAATCATGTGGCCAGTCCAAGAGCAAGTGGGTAGTAACTAGATCAGGGGTGTCAATCTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS CCA 72 bp | CCCTATCAAAAGGAATTCCATACTACTTCCATTATCTaGGCAATCGTAACCCTGGAAGACCAACACATCCCC | + |
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Preference number: 6 (lower is better) Translates to: PYQKEFHTTSII*AIVTLEDQHIP Trigger: GGGGATGTGTTGGTCTTCCAGGGTTACGATTGCCCAGATAATGGAAGTAGTATGGAATTCCTTTTGATAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS CAA 90 bp | CCAGTTCAGAACTGCCAGTCTAACTCAGTAACTGCTTGTATAACTTaGGGCAAAAGAACTCTTTACGCCTCACTTTTACTTACTCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: PVQNCQSNSVTACIT*GKRTLYASLLLTQQ Trigger: CTGCTGAGTAAGTAAAAGTGAGGCGTAAAGAGTTCTTTTGCCCAAAGTTATACAAGCAGTTACTGAGTTAGACTGGCAGTTCTGAACTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS CAA 90 bp | AGGCTCGTTGTTAAAACTACGGCTTTCCAGAAGTTTACAATCCTATaGACTCCTATCTGTAAAGCTAAATATGAACTACCGATTGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: RLVVKTTAFQKFTIL*TPICKAKYELPIGA Trigger: GGCCCCAATCGGTAGTTCATATTTAGCTTTACAGATAGGAGTCAATAGGATTGTAAACTTCTGGAAAGCCGTAGTTTTAACAACGAGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000448136.5 ENST00000586846.2 ENST00000587743.1 |
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| CDS CAA 72 bp | AACTGCCAGTCTAACTCAGTAACTGCTTGTATAACTTaGGGCAAAAGAACTCTTTACGCCTCACTTTTACTT | + |
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Preference number: 6 (lower is better) Translates to: NCQSNSVTACIT*GKRTLYASLLL Trigger: AAGTAAAAGTGAGGCGTAAAGAGTTCTTTTGCCCAAAGTTATACAAGCAGTTACTGAGTTAGACTGGCAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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| CDS TCA 72 bp | AGGAATGTGTATATTTTAACACTTTGTAGGTGGCTCTaGTGTAATAATCAAGTTTGGAAATCACTAACCCTG | + |
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Preference number: 6 (lower is better) Translates to: RNVYILTLCRWL*CNNQVWKSLTL Trigger: CAGGGTTAGTGATTTCCAAACTTGATTATTACATCAGAGCCACCTACAAAGTGTTAAAATATACACATTCCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587743.1 |
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