Pregenerated sensors for SNHG1 (Homo sapiens)
Ensembl gene IDs: ENSG00000255717Ensembl transcript IDs: ENST00000535076.6, ENST00000535689.6, ENST00000537024.6, ENST00000537068.5, ENST00000537869.5, ENST00000537925.5, ENST00000537965.6, ENST00000538266.5, ENST00000538654.6, ENST00000539921.6, ENST00000539975.5, ENST00000540725.6, ENST00000540865.5, ENST00000540904.1, ENST00000541416.6, ENST00000541578.6, ENST00000541615.5, ENST00000542112.5, ENST00000544550.6, ENST00000544983.2, ENST00000545308.5, ENST00000545440.5, ENST00000545688.5, ENST00000545920.2, ENST00000652879.1, ENST00000653690.1, ENST00000655919.1, ENST00000656240.1, ENST00000656241.1, ENST00000656268.1, ENST00000656589.1, ENST00000658540.1, ENST00000660547.1, ENST00000660730.1, ENST00000660960.1, ENST00000661616.1, ENST00000661936.1, ENST00000662229.1, ENST00000662400.1, ENST00000663092.1, ENST00000663237.1, ENST00000663967.1, ENST00000664307.1, ENST00000665371.1, ENST00000665512.1, ENST00000667655.1, ENST00000668048.1, ENST00000668309.1, ENST00000670323.1, ENST00000670469.1, ENST00000670502.1, ENST00000670729.1, ENST00000671236.1
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | TTTAAGCCTCGAGGCCACGCACAAGACCTTATCCGCCAGTCGCCCTaGCCAGGCAGCTACAACACAGAAGGCATAGTGCGTGCTATGCTA | + |
Preference number: 5 (lower is better) Translates to: FKPRGHAQDLIRQSP*PGSYNTEGIVRAML Trigger: TAGCATAGCACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGTCTTGTGCGTGGCCTCGAGGCTTAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 25 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537925.5 ENST00000538654.6 ENST00000541416.6 ENST00000544550.6 ENST00000544983.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000658540.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000668309.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CCA 90 bp | TTCCTTCTGGAACAAATCTTCCTCTTCTCCCCCAGCCAGTCCCAGTaGGTTCACCTTTACAGGCTCTGGGACTGTAACTTCAGCCTGGAG | + |
Preference number: 5 (lower is better) Translates to: FLLEQIFLFSPSQSQ*VHLYRLWDCNFSLE Trigger: CTCCAGGCTGAAGTTACAGTCCCAGAGCCTGTAAAGGTGAACCCACTGGGACTGGCTGGGGGAGAAGAGGAAGATTTGTTCCAGAAGGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000545688.5 ENST00000660730.1 |
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CDS TCA 90 bp | ATCTCCTCAGAGTTATTTATCCTCACGGAGCTCAGTACAGGTCTGTaGAAAGGTCCTCATCATAGGAAGGGGGACCTACACGGCCCGCCA | + |
Preference number: 5 (lower is better) Translates to: ISSELFILTELSTGL*KGPHHRKGDLHGPP Trigger: TGGCGGGCCGTGTAGGTCCCCCTTCCTATGATGAGGACCTTTTCACAGACCTGTACTGAGCTCCGTGAGGATAAATAACTCTGAGGAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 27 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537925.5 ENST00000538654.6 ENST00000540725.6 ENST00000541416.6 ENST00000544550.6 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000658540.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000668309.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CCA 90 bp | AACAGGGGTAAGGCAGGATGTTTCCTCCTCATTGGAGCAGAATCCTaGAAAGCTACAACTGACAAGCATTCGTCTGACCCTGGGCAGATC | + |
Preference number: 5 (lower is better) Translates to: NRGKAGCFLLIGAES*KATTDKHSSDPGQI Trigger: GATCTGCCCAGGGTCAGACGAATGCTTGTCAGTTGTAGCTTTCCAGGATTCTGCTCCAATGAGGAGGAAACATCCTGCCTTACCCCTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 23 transcripts: ENST00000535076.6 ENST00000537965.6 ENST00000541416.6 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656268.1 ENST00000656589.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662400.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668309.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS GCA 90 bp | GTGCAACAACAGAGCTCTCTTCGGTTCCAACGTGCGCGTAAATCCTaGAGACAGGAGCCCAATAAGACATTAGGTCAACTCAGGGCATTT | + |
Preference number: 5 (lower is better) Translates to: VQQQSSLRFQRARKS*RQEPNKTLGQLRAF Trigger: AAATGCCCTGAGTTGACCTAATGTCTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000537925.5 ENST00000656240.1 |
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CDS GCA 90 bp | CTGCAACAACAGAGCTCTCTTCGGTTCCAACGTGCGCGTAAATCCTaGAGACAGGAGCCCAATAAGACATTAGGTCAACTCAGGGCATTT | + |
Preference number: 5 (lower is better) Translates to: LQQQSSLRFQRARKS*RQEPNKTLGQLRAF Trigger: AAATGCCCTGAGTTGACCTAATGTCTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000538654.6 ENST00000545920.2 ENST00000656268.1 ENST00000660960.1 ENST00000661936.1 ENST00000662400.1 ENST00000664307.1 ENST00000665512.1 ENST00000670469.1 |
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CDS GCA 90 bp | TTGCAACAACAGAGCTCTCTTCGGTTCCAACGTGCGCGTAAATCCTaGAGACAGGAGCCCAATAAGACATTAGGTCAACTCAGGGCATTT | + |
Preference number: 5 (lower is better) Translates to: LQQQSSLRFQRARKS*RQEPNKTLGQLRAF Trigger: AAATGCCCTGAGTTGACCTAATGTCTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 18 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000540725.6 ENST00000541416.6 ENST00000544550.6 ENST00000544983.2 ENST00000652879.1 ENST00000655919.1 ENST00000656241.1 ENST00000658540.1 ENST00000660730.1 ENST00000661616.1 ENST00000662229.1 ENST00000663237.1 ENST00000665371.1 ENST00000668309.1 ENST00000670729.1 ENST00000671236.1 |
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CDS TCA 90 bp | CAAGCTAGGTCAGTAGTTTACGAAAGTGGTCATCTATACAGTGCCTaGGTTTGGGTTCTGGGCCTGGATCATGTAAGAAAGGCAGCAAAG | + |
Preference number: 5 (lower is better) Translates to: QARSVVYESGHLYSA*VWVLGLDHVRKAAK Trigger: CTTTGCTGCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGTAAACTACTGACCTAGCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 44 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537869.5 ENST00000537925.5 ENST00000537965.6 ENST00000538654.6 ENST00000539921.6 ENST00000539975.5 ENST00000540725.6 ENST00000541416.6 ENST00000541578.6 ENST00000544550.6 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000662400.1 ENST00000663092.1 ENST00000663237.1 ENST00000663967.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668048.1 ENST00000668309.1 ENST00000670323.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CCA 90 bp | CAATATGCAAATGGAGACCTAAAGGCTCATGACGGGAACAGAAGGTaGCTGTATACAGAGGAACAGACACGAAGTGGAGTTATGGGAAGT | + |
Preference number: 5 (lower is better) Translates to: QYANGDLKAHDGNRR*LYTEEQTRSGVMGS Trigger: ACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTGTTCCCGTCATGAGCCTTTAGGTCTCCATTTGCATATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 44 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537068.5 ENST00000537869.5 ENST00000537925.5 ENST00000537965.6 ENST00000538654.6 ENST00000539921.6 ENST00000539975.5 ENST00000540725.6 ENST00000541416.6 ENST00000541578.6 ENST00000544550.6 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000662400.1 ENST00000663092.1 ENST00000663237.1 ENST00000663967.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668048.1 ENST00000670323.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CCA 90 bp | GAGGAACAGACACGAAGTGGAGTTATGGGAAGTTCAATCAACAATTaGCAACAAGCTAGGTCAGTAGTTTACGAAAGTGGTCATCTATAC | + |
Preference number: 5 (lower is better) Translates to: EEQTRSGVMGSSINN*QQARSVVYESGHLY Trigger: GTATAGATGACCACTTTCGTAAACTACTGACCTAGCTTGTTGCCAATTGTTGATTGAACTTCCCATAACTCCACTTCGTGTCTGTTCCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 45 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537068.5 ENST00000537869.5 ENST00000537925.5 ENST00000537965.6 ENST00000538654.6 ENST00000539921.6 ENST00000539975.5 ENST00000540725.6 ENST00000541416.6 ENST00000541578.6 ENST00000544550.6 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000662400.1 ENST00000663092.1 ENST00000663237.1 ENST00000663967.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668048.1 ENST00000668309.1 ENST00000670323.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CCA 90 bp | ACAAAGATGACATACACCAATTTGGATAATTACCTGTATTCACCCTaGGAGGCAGCTGAATTCCCCAGGATAGATTATGAGATGCTGGAA | + |
Preference number: 5 (lower is better) Translates to: TKMTYTNLDNYLYSP*EAAEFPRIDYEMLE Trigger: TTCCAGCATCTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAATACAGGTAATTATCCAAATTGGTGTATGTCATCTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000545308.5 ENST00000653690.1 ENST00000660730.1 |
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CDS TCA 90 bp | AAAATAACACCCTTCACTAACACCTCAGACAAATCAATAGGGCCCTaGCATTTGTTGCGTACAGTACAGTGCTACTCAGAATTTTCTGTT | + |
Preference number: 5 (lower is better) Translates to: KITPFTNTSDKSIGP*HLLRTVQCYSEFSV Trigger: AACAGAAAATTCTGAGTAGCACTGTACTGTACGCAACAAATGTCAGGGCCCTATTGATTTGTCTGAGGTGTTAGTGAAGGGTGTTATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 10 transcripts: ENST00000538654.6 ENST00000545920.2 ENST00000656268.1 ENST00000660960.1 ENST00000661936.1 ENST00000662400.1 ENST00000663967.1 ENST00000664307.1 ENST00000665512.1 ENST00000670469.1 |
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CDS CCA 72 bp | CGAGGCCACGCACAAGACCTTATCCGCCAGTCGCCCTaGCCAGGCAGCTACAACACAGAAGGCATAGTGCGT | + |
Preference number: 6 (lower is better) Translates to: RGHAQDLIRQSP*PGSYNTEGIVR Trigger: ACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGTCTTGTGCGTGGCCTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 25 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537925.5 ENST00000538654.6 ENST00000541416.6 ENST00000544550.6 ENST00000544983.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000658540.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000668309.1 ENST00000670729.1 ENST00000671236.1 |
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CDS GCA 72 bp | GAAAGGCAGCAAAGTCTGGGTGCCATGAATCACACCTaGAATCCCAGCACTTTGGAAATCTGTGGTGAGAGG | + |
Preference number: 6 (lower is better) Translates to: ERQQSLGAMNHT*NPSTLEICGER Trigger: CCTCTCACCACAGATTTCCAAAGTGCTGGGATTGCAGGTGTGATTCATGGCACCCAGACTTTGCTGCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 47 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537869.5 ENST00000537925.5 ENST00000537965.6 ENST00000538654.6 ENST00000539921.6 ENST00000539975.5 ENST00000540725.6 ENST00000541416.6 ENST00000541578.6 ENST00000541615.5 ENST00000542112.5 ENST00000544550.6 ENST00000544983.2 ENST00000545440.5 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000662400.1 ENST00000663092.1 ENST00000663237.1 ENST00000663967.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668048.1 ENST00000668309.1 ENST00000670323.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS GCA 72 bp | CAGAGCTCTCTTCGGTTCCAACGTGCGCGTAAATCCTaGAGACAGGAGCCCAATAAGACATTAGGTCAACTC | + |
Preference number: 6 (lower is better) Translates to: QSSLRFQRARKS*RQEPNKTLGQL Trigger: GAGTTGACCTAATGTCTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 29 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537925.5 ENST00000538654.6 ENST00000540725.6 ENST00000541416.6 ENST00000544550.6 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000658540.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000662400.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000668309.1 ENST00000670469.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CAA 90 bp | GGTTCCCAGGCTAAAACAGGGGTAAGGCAGGATGTTTCCTCCTCATaGGAGCAGAATCCTGGAAAGCTACAACTGACAAGCATTCGTCTG | + |
Preference number: 6 (lower is better) Translates to: GSQAKTGVRQDVSSS*EQNPGKLQLTSIRL Trigger: CAGACGAATGCTTGTCAGTTGTAGCTTTCCAGGATTCTGCTCCAATGAGGAGGAAACATCCTGCCTTACCCCTGTTTTAGCCTGGGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 23 transcripts: ENST00000535076.6 ENST00000537965.6 ENST00000541416.6 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656268.1 ENST00000656589.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662400.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668309.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CCA 72 bp | TGGGTCTTGTCCCATTCCTTCACCAGTAAGCTCTTGTaGGCTGAACATTGCAACAACAGAGCTCTCTTCGGT | + |
Preference number: 6 (lower is better) Translates to: WVLSHSFTSKLL*AEHCNNRALFG Trigger: ACCGAAGAGAGCTCTGTTGTTGCAATGTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 36 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537068.5 ENST00000537869.5 ENST00000537965.6 ENST00000538266.5 ENST00000539921.6 ENST00000540725.6 ENST00000540865.5 ENST00000541416.6 ENST00000541578.6 ENST00000541615.5 ENST00000544550.6 ENST00000544983.2 ENST00000545308.5 ENST00000545440.5 ENST00000545688.5 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656241.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000661616.1 ENST00000662229.1 ENST00000663092.1 ENST00000663237.1 ENST00000665371.1 ENST00000667655.1 ENST00000668309.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS GCA 72 bp | CTGGCCAGGCAGCTACAACACAGAAGGCATAGTGCGTaGTATGCTATGTTCGCACAATCGCTCAAAAGAAAA | + |
Preference number: 6 (lower is better) Translates to: LARQLQHRRHSA*YAMFAQSLKRK Trigger: TTTTCTTTTGAGCGATTGTGCGAACATAGCATAGCACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 24 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537925.5 ENST00000538654.6 ENST00000541416.6 ENST00000544550.6 ENST00000544983.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000658540.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000663237.1 ENST00000665371.1 ENST00000665512.1 ENST00000668309.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CAA 72 bp | AGATGGGTCTTGTCCCATTCCTTCACCAGTAAGCTCTaGTGGGCTGAACATTGCAACAACAGAGCTCTCTTC | + |
Preference number: 6 (lower is better) Translates to: RWVLSHSFTSKL*WAEHCNNRALF Trigger: GAAGAGAGCTCTGTTGTTGCAATGTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 36 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537068.5 ENST00000537869.5 ENST00000537965.6 ENST00000538266.5 ENST00000539921.6 ENST00000540725.6 ENST00000540865.5 ENST00000541416.6 ENST00000541578.6 ENST00000541615.5 ENST00000544550.6 ENST00000544983.2 ENST00000545308.5 ENST00000545440.5 ENST00000545688.5 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656241.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000661616.1 ENST00000662229.1 ENST00000663092.1 ENST00000663237.1 ENST00000665371.1 ENST00000667655.1 ENST00000668309.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CAA 72 bp | GCTAAAACAGGGGTAAGGCAGGATGTTTCCTCCTCATaGGAGCAGAATCCTGGAAAGCTACAACTGACAAGC | + |
Preference number: 6 (lower is better) Translates to: AKTGVRQDVSSS*EQNPGKLQLTS Trigger: GCTTGTCAGTTGTAGCTTTCCAGGATTCTGCTCCAATGAGGAGGAAACATCCTGCCTTACCCCTGTTTTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 23 transcripts: ENST00000535076.6 ENST00000537965.6 ENST00000541416.6 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656268.1 ENST00000656589.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662400.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668309.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CAA 72 bp | GTAACAGCACACCCTTACAAGAACTGTAGTACCGGGTaGCGATCTCCCTCCCCAGAAAATCATTTCAAGAGG | + |
Preference number: 6 (lower is better) Translates to: VTAHPYKNCSTG*RSPSPENHFKR Trigger: CCTCTTGAAATGATTTTCTGGGGAGGGAGATCGCAACCCGGTACTACAGTTCTTGTAAGGGTGTGCTGTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 16 transcripts: ENST00000535076.6 ENST00000540904.1 ENST00000544983.2 ENST00000545308.5 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656268.1 ENST00000660730.1 ENST00000660960.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000668309.1 ENST00000671236.1 |
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CDS CCA 72 bp | GTAACTATTGCAAAGCCATTTACCTCAAACTCCTCTTaGGCTTTAGAGAGAAGGTGCTGGCCCTTTGAGCCA | + |
Preference number: 6 (lower is better) Translates to: VTIAKPFTSNSS*ALERRCWPFEP Trigger: TGGCTCAAAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 18 transcripts: ENST00000535689.6 ENST00000537024.6 ENST00000538654.6 ENST00000540865.5 ENST00000545920.2 ENST00000652879.1 ENST00000656240.1 ENST00000656241.1 ENST00000656589.1 ENST00000660547.1 ENST00000660960.1 ENST00000662229.1 ENST00000663237.1 ENST00000665371.1 ENST00000665512.1 ENST00000668309.1 ENST00000670469.1 ENST00000670729.1 |
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CDS CAA 72 bp | AGTTTACGAAAGTGGTCATCTATACAGTGCCTGAGTTaGGGTTCTGGGCCTGGATCATGTAAGAAAGGCAGC | + |
Preference number: 6 (lower is better) Translates to: SLRKWSSIQCLS*GSGPGSCKKGS Trigger: GCTGCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGTAAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 44 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537869.5 ENST00000537925.5 ENST00000537965.6 ENST00000538654.6 ENST00000539921.6 ENST00000539975.5 ENST00000540725.6 ENST00000541416.6 ENST00000541578.6 ENST00000544550.6 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000662400.1 ENST00000663092.1 ENST00000663237.1 ENST00000663967.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668048.1 ENST00000668309.1 ENST00000670323.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CAA 72 bp | ACAAGCTGCTCCTGGAACATTACTGTAACGCTGGCTTaGCATAAAGATGGGTCTTGTCCCATTCCTTCACCA | + |
Preference number: 6 (lower is better) Translates to: TSCSWNITVTLA*HKDGSCPIPSP Trigger: TGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGAGCAGCTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539975.5 |
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CDS CAA 72 bp | GGTAACTATTGCAAAGCCATTTACCTCAAACTCCTCTaGGGCTTTAGAGAGAAGGTGCTGGCCCTGAAAGGA | + |
Preference number: 6 (lower is better) Translates to: GNYCKAIYLKLL*GFREKVLALKG Trigger: TCCTTTCAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000537965.6 ENST00000655919.1 ENST00000656268.1 |
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CDS TCA 72 bp | CCCTTCACTAACACCTCAGACAAATCAATAGGGCCCTaGCATTTGTTGCGTACAGTACAGTGCTACTCAGAA | + |
Preference number: 6 (lower is better) Translates to: PFTNTSDKSIGP*HLLRTVQCYSE Trigger: TTCTGAGTAGCACTGTACTGTACGCAACAAATGTCAGGGCCCTATTGATTTGTCTGAGGTGTTAGTGAAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 10 transcripts: ENST00000538654.6 ENST00000545920.2 ENST00000656268.1 ENST00000660960.1 ENST00000661936.1 ENST00000662400.1 ENST00000663967.1 ENST00000664307.1 ENST00000665512.1 ENST00000670469.1 |
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CDS CAA 72 bp | TGTACACCTACCTGGAACATTACTGTAACGCTGGCTTaGCATAAAGATGGGTCTTGTCCCATTCCTTCACCA | + |
Preference number: 6 (lower is better) Translates to: CTPTWNITVTLA*HKDGSCPIPSP Trigger: TGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTAGGTGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 15 transcripts: ENST00000535076.6 ENST00000537965.6 ENST00000538654.6 ENST00000540904.1 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656268.1 ENST00000660960.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000668309.1 ENST00000671236.1 |
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CDS CAA 90 bp | TATATAGCAACAAGCTGCTCCTGGAACATTACTGTAACGCTGGCTTaGCATAAAGATGGGTCTTGTCCCATTCCTTCACCAGTAAGCTCT | + |
Preference number: 6 (lower is better) Translates to: YIATSCSWNITVTLA*HKDGSCPIPSPVSS Trigger: AGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGAGCAGCTTGTTGCTATATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539975.5 |
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CDS CAA 90 bp | CATAAACCATGTACACCTACCTGGAACATTACTGTAACGCTGGCTTaGCATAAAGATGGGTCTTGTCCCATTCCTTCACCAGTAAGCTCT | + |
Preference number: 6 (lower is better) Translates to: HKPCTPTWNITVTLA*HKDGSCPIPSPVSS Trigger: AGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTAGGTGTACATGGTTTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 15 transcripts: ENST00000535076.6 ENST00000537965.6 ENST00000538654.6 ENST00000540904.1 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656268.1 ENST00000660960.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000668309.1 ENST00000671236.1 |
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CDS CCA 72 bp | CAGAAGGTGGCTGTATACAGAGGAACAGACACGAAGTaGAGTTATGGGAAGTTCAATCAACAATTGGCAACA | + |
Preference number: 6 (lower is better) Translates to: QKVAVYRGTDTK*SYGKFNQQLAT Trigger: TGTTGCCAATTGTTGATTGAACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 45 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537068.5 ENST00000537869.5 ENST00000537925.5 ENST00000537965.6 ENST00000538654.6 ENST00000539921.6 ENST00000539975.5 ENST00000540725.6 ENST00000541416.6 ENST00000541578.6 ENST00000544550.6 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000662400.1 ENST00000663092.1 ENST00000663237.1 ENST00000663967.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668048.1 ENST00000668309.1 ENST00000670323.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CAA 72 bp | ATCAGGAATACCTGGAACATTACTGTAACGCTGGCTTaGCATAAAGATGGGTCTTGTCCCATTCCTTCACCA | + |
Preference number: 6 (lower is better) Translates to: IRNTWNITVTLA*HKDGSCPIPSP Trigger: TGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTATTCCTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000537068.5 ENST00000538266.5 ENST00000541615.5 ENST00000542112.5 ENST00000545440.5 |
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CDS CAA 90 bp | TTAGCCCAAGAACTTCCTATTGGCTGTAAAGCCTCCTCAAATAACTaGCAATTTTTAGAACATGTCACTGGAAGGCAGGCTCACAGCTCA | + |
Preference number: 6 (lower is better) Translates to: LAQELPIGCKASSNN*QFLEHVTGRQAHSS Trigger: TGAGCTGTGAGCCTGCCTTCCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAGGAGGCTTTACAGCCAATAGGAAGTTCTTGGGCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 21 transcripts: ENST00000535689.6 ENST00000537024.6 ENST00000537965.6 ENST00000538654.6 ENST00000540865.5 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000660547.1 ENST00000660960.1 ENST00000662229.1 ENST00000663237.1 ENST00000665371.1 ENST00000665512.1 ENST00000668309.1 ENST00000670469.1 ENST00000670729.1 |
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CDS CCA 72 bp | ACATACACCAATTTGGATAATTACCTGTATTCACCCTaGGAGGCAGCTGAATTCCCCAGGATAGATTATGAG | + |
Preference number: 6 (lower is better) Translates to: TYTNLDNYLYSP*EAAEFPRIDYE Trigger: CTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAATACAGGTAATTATCCAAATTGGTGTATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 16 transcripts: ENST00000535076.6 ENST00000540904.1 ENST00000544983.2 ENST00000545308.5 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656268.1 ENST00000660730.1 ENST00000660960.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000668309.1 ENST00000671236.1 |
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CDS CCA 72 bp | ACACGAAGTGGAGTTATGGGAAGTTCAATCAACAATTaGCAACAAGCTAGGTCAGTAGTTTACGAAAGTGGT | + |
Preference number: 6 (lower is better) Translates to: TRSGVMGSSINN*QQARSVVYESG Trigger: ACCACTTTCGTAAACTACTGACCTAGCTTGTTGCCAATTGTTGATTGAACTTCCCATAACTCCACTTCGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 45 transcripts: ENST00000535076.6 ENST00000535689.6 ENST00000537024.6 ENST00000537068.5 ENST00000537869.5 ENST00000537925.5 ENST00000537965.6 ENST00000538654.6 ENST00000539921.6 ENST00000539975.5 ENST00000540725.6 ENST00000541416.6 ENST00000541578.6 ENST00000544550.6 ENST00000544983.2 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000658540.1 ENST00000660547.1 ENST00000660730.1 ENST00000660960.1 ENST00000661616.1 ENST00000661936.1 ENST00000662229.1 ENST00000662400.1 ENST00000663092.1 ENST00000663237.1 ENST00000663967.1 ENST00000664307.1 ENST00000665371.1 ENST00000665512.1 ENST00000667655.1 ENST00000668048.1 ENST00000668309.1 ENST00000670323.1 ENST00000670469.1 ENST00000670502.1 ENST00000670729.1 ENST00000671236.1 |
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CDS CAA 72 bp | GAACTTCCTATTGGCTGTAAAGCCTCCTCAAATAACTaGCAATTTTTAGAACATGTCACTGGAAGGCAGGCT | + |
Preference number: 6 (lower is better) Translates to: ELPIGCKASSNN*QFLEHVTGRQA Trigger: AGCCTGCCTTCCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAGGAGGCTTTACAGCCAATAGGAAGTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 21 transcripts: ENST00000535689.6 ENST00000537024.6 ENST00000537965.6 ENST00000538654.6 ENST00000540865.5 ENST00000545920.2 ENST00000652879.1 ENST00000655919.1 ENST00000656240.1 ENST00000656241.1 ENST00000656268.1 ENST00000656589.1 ENST00000660547.1 ENST00000660960.1 ENST00000662229.1 ENST00000663237.1 ENST00000665371.1 ENST00000665512.1 ENST00000668309.1 ENST00000670469.1 ENST00000670729.1 |
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CDS CAA 90 bp | ACAGGCCTAAAAAGGCACTTTTTCCTACCCTATATACTGAGTGCATaGAATACCGTGAAATTACTCACCTTTGAGCCAAGCAGGTTATTG | + |
Preference number: 6 (lower is better) Translates to: TGLKRHFFLPYILSA*NTVKLLTFEPSRLL Trigger: CAATAACCTGCTTGGCTCAAAGGTGAGTAATTTCACGGTATTCAATGCACTCAGTATATAGGGTAGGAAAAAGTGCCTTTTTAGGCCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 8 transcripts: ENST00000535076.6 ENST00000537965.6 ENST00000655919.1 ENST00000656268.1 ENST00000662400.1 ENST00000663092.1 ENST00000664307.1 ENST00000670502.1 |
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CDS CCA 72 bp | CAATTCAAATCATCTGACAGTAACGTGATCGATATATaGATGAGGGTAACAGCACACCCTTACAAGAACTGT | + |
Preference number: 6 (lower is better) Translates to: QFKSSDSNVIDI*MRVTAHPYKNC Trigger: ACAGTTCTTGTAAGGGTGTGCTGTTACCCTCATCCATATATCGATCACGTTACTGTCAGATGATTTGAATTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 15 transcripts: ENST00000535076.6 ENST00000544983.2 ENST00000545308.5 ENST00000545920.2 ENST00000652879.1 ENST00000653690.1 ENST00000655919.1 ENST00000656268.1 ENST00000660730.1 ENST00000660960.1 ENST00000663237.1 ENST00000664307.1 ENST00000665371.1 ENST00000668309.1 ENST00000671236.1 |
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CDS CAA 72 bp | AAAAGGCACTTTTTCCTACCCTATATACTGAGTGCATaGAATACCGTGAAATTACTCACCTTTGAGCCAAGC | + |
Preference number: 6 (lower is better) Translates to: KRHFFLPYILSA*NTVKLLTFEPS Trigger: GCTTGGCTCAAAGGTGAGTAATTTCACGGTATTCAATGCACTCAGTATATAGGGTAGGAAAAAGTGCCTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000535076.6 ENST00000537965.6 ENST00000655919.1 ENST00000656268.1 ENST00000662400.1 ENST00000663092.1 ENST00000664307.1 ENST00000670502.1 |