RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMIM43 (Homo sapiens)

Ensembl gene IDs: ENSG00000164112

Ensembl transcript IDs: ENST00000394394.5, ENST00000394396.5, ENST00000461198.5, ENST00000505198.5, ENST00000506551.2, ENST00000513254.5, ENST00000514885.5, ENST00000643663.2, ENST00000643802.2

Found 226 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCTTCTTTTTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCGGCCAACCCTAAGG +
Preference number: 1 (lower is better)
Translates to: AFFLQAQTVIAAVVP*APVKGSSSARPTLR
Trigger: CCTTAGGGTTGGCCGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000643663.2
3UTR TCA 90 bp GCCACCAAGGAAGTGCACAGGTACCCAGGGCCCTCTAGAAAATCCTaGTGTGGGACAAGGATATTGACTGAGAGAGGTCAGCCCTGTCAA +
Preference number: 1 (lower is better)
Translates to: ATKEVHRYPGPSRKS*CGTRILTERGQPCQ
Trigger: TTGACAGGGCTGACCTCTCTCAGTCAATATCCTTGTCCCACATCAGGATTTTCTAGAGGGCCCTGGGTACCTGTGCACTTCCTTGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR GCA 90 bp GCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCTTTTTaGAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTGAGCACCAG +
Preference number: 1 (lower is better)
Translates to: AFAESFHLPLFQPSF*RPKLSLQLWSPEHQ
Trigger: CTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR TCA 90 bp GGTACCCAGGGCCCTCTAGAAAATCCTGATGTGGGACAAGGATATTaGCTGAGAGAGGTCAGCCCTGTCAAGAGTTTTGTGAGAACACCT +
Preference number: 1 (lower is better)
Translates to: GTQGPLENPDVGQGY*LREVSPVKSFVRTP
Trigger: AGGTGTTCTCACAAAACTCTTGACAGGGCTGACCTCTCTCAGTCAATATCCTTGTCCCACATCAGGATTTTCTAGAGGGCCCTGGGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CCA 90 bp CCTGGCACCTTGCCATTCCCAGAAAAGCCAGTGCATGGCACACTCTaGGTAAATTTTCTCTCTTATTCTGTAGAATCGCACCAGATGGCA +
Preference number: 1 (lower is better)
Translates to: PGTLPFPEKPVHGTL*VNFLSYSVESHQMA
Trigger: TGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATTTACCCAGAGTGTGCCATGCACTGGCTTTTCTGGGAATGGCAAGGTGCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CCA 90 bp AATTCCAAATACCATTCTTTCTTTTCCTCTGGGAGACAAATTCAATaGCAAGCTAGAATAGTGAAGACCAGGGGATACCAAGCCCATGAC +
Preference number: 1 (lower is better)
Translates to: NSKYHSFFSSGRQIQ*QARIVKTRGYQAHD
Trigger: GTCATGGGCTTGGTATCCCCTGGTCTTCACTATTCTAGCTTGCCATTGAATTTGTCTCCCAGAGGAAAAGAAAGAATGGTATTTGGAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR TCA 90 bp ATAGTCACTAGGAAGGTGAAGTGGAGCAGTACTGCCATTTCTTCATaGTCAATTATCACTAAAATCAGTCACAGGAACTATTCCCAGGAG +
Preference number: 1 (lower is better)
Translates to: IVTRKVKWSSTAISS*SIITKISHRNYSQE
Trigger: CTCCTGGGAATAGTTCCTGTGACTGATTTTAGTGATAATTGATCATGAAGAAATGGCAGTACTGCTCCACTTCACCTTCCTAGTGACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGCTCGGCTCTGGAAGCTaGGAGGCCGCGAGGACGGAG +
Preference number: 2 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKELGSGS*EAARTE
Trigger: CTCCGTCCTCGCGGCCTCCCAGCTTCCAGAGCCGAG...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643802.2
3UTR-3UTR CCA 90 bp TCCTTCTTCTTGTGGGGTGCTGCGGGGACCATCTTGGAACCTAGTTCCAAGTTTGCAGCAGCTCGGCTCTaGAAGCTGGGAGGCCGCGAG +
Preference number: 2 (lower is better)
Translates to: SFFLWGAAGTILEPSSKFAAARL*KLGGRE
Trigger: CTCGCGGCCTCCCAGCTTCCAGAGCCGAGCTGCTGC...AAACTTGGAACTAGGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAGAAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000643802.2
3UTR-3UTR CCA 90 bp TACCAGTGGTGCTGCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCTTGGTGGCTGGAAGCTaGGAGGCCGCGAGGACGGAG +
Preference number: 2 (lower is better)
Translates to: YQWCCICRKLPSPVVPAFLVAGS*EAARTE
Trigger: CTCCGTCCTCGCGGCCTCCCAGCTTCCAGCCACCAA...GAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
3UTR-3UTR CCA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCACCGTGGTTGGTGGCTaGAAGCTGGGAGGCCGCGAG +
Preference number: 2 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCTVVGG*KLGGRE
Trigger: CTCGCGGCCTCCCAGCTTCCAGCCACCAACCACGGT...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
3UTR-3UTR TCA 90 bp GAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGCCAAGTTTGGAAAGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGC +
Preference number: 2 (lower is better)
Translates to: ESHQMASVLHLQLCQVWKAAVVP*APVKGS
Trigger: GCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGC...TTTCCAAACTTGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGCTTCTTGTGGGGTGCTaGGGGGACCATCTTGGAACC +
Preference number: 2 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKELLVGC*GDHLGT
Trigger: GGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAG...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp TACCAGTGGTGCTGCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCATTCGAAACCTACCCTaGACGGCAATCCGCAAGCAC +
Preference number: 2 (lower is better)
Translates to: YQWCCICRKLPSPVVPAFIRNLP*TAIRKH
Trigger: GTGCTTGCGGATTGCCGTGCAGGGTAGGTTTCGAAT...GAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
3UTR-3UTR CCA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGACTAACCGTGGTTGGTaGCTGGAAGCTGGGAGGCCG +
Preference number: 2 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWTNRGW*LEAGRP
Trigger: CGGCCTCCCAGCTTCCAGCCACCAACCACGGTTAGT...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
3UTR-3UTR TCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGCTGTCAAGAGTTTTGTaGGAACACCTGACATGCCTT +
Preference number: 2 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKELSRVL*EHLTCL
Trigger: AAGGCATGTCAGGTGTTCTCACAAAACTCTTGACAG...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp GAAAGGAGTAAGGTAGCCTTTCTTTGCGTAGATTCCCCTCCTCCATGCATGAAAGTGGGACAAGGATATTaGCTGAGAGAGGTCAGCCCT +
Preference number: 2 (lower is better)
Translates to: ERSKVAFLCVDSPPPCMKVGQGY*LREVSP
Trigger: AGGGCTGACCTCTCTCAGTCAATATCCTTGTCCCAC...TTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTTACTCCTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGCCAAGTTTCCACCCCTaGAAGCGAACCAAAAACAAA +
Preference number: 2 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKEPSFHP*KRTKNK
Trigger: TTTGTTTTTGGTTCGCTTGCAGGGGTGGAAACTTGG...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCAGCACTAACCGTGGTTaGTGGCTGGAAGCTGGGAGG +
Preference number: 2 (lower is better)
Translates to: MIQMREQRNRTFFILHQPSTNRG*WLEAGR
Trigger: CCTCCCAGCTTCCAGCCACCAACCACGGTTAGTGCT...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
3UTR-3UTR CCA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCTGTCATTGCAGCTGTaGTCCCCTGAGCACCAGTCA +
Preference number: 2 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHLSLQL*SPEHQS
Trigger: TGACTGGTGCTCAGGGGACCACAGCTGCAATGACAG...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp TCCTTCTTCTTGTGGGGTGCTGCGGGGACCATCTTGGAACCTAGTTCCAAGTTTGGCAGGTTAAATTCATaGATACCAGTGGTGCTGCAT +
Preference number: 2 (lower is better)
Translates to: SFFLWGAAGTILEPSSKFGRLNS*IPVVLH
Trigger: ATGCAGCACCACTGGTATCCATGAATTTAACCTGCC...AAACTTGGAACTAGGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAGAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGGGGAGCAGTGCTGCTTaGAGCTTTGACAGTTGTGAA +
Preference number: 2 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVGSSAA*SFDSCE
Trigger: TTCACAACTGTCAAAGCTCCAAGCAGCACTGCTCCC...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGTGTCCTGATAAGATCTaGAGCCATTTTGAACACCCT +
Preference number: 2 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKECPDKI*SHFEHP
Trigger: AGGGTGTTCAAAATGGCTTCAGATCTTATCAGGACA...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCCCCTCTAGAAAATCCTaGTGTGGGACAAGGATATTG +
Preference number: 2 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCPSRKS*CGTRIL
Trigger: CAATATCCTTGTCCCACATCAGGATTTTCTAGAGGG...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp TCCTTCTTCTTGTGGGGTGCTGCGGGGACCATCTTGGAACCTAGTTCCAAGTTTAGAAAAGCCAGTGCATaGCACACTCTGGGTAAATTT +
Preference number: 2 (lower is better)
Translates to: SFFLWGAAGTILEPSSKFRKASA*HTLGKF
Trigger: AAATTTACCCAGAGTGTGCCATGCACTGGCTTTTCT...AAACTTGGAACTAGGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAGAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp GAAAGGAGTAAGGTAGCCTTTCTTTGCGTAGATTCCCCTCCTCCATGCATGAAAGGGAGCAGTGCTGCTTaGAGCTTTGACAGTTGTGAA +
Preference number: 2 (lower is better)
Translates to: ERSKVAFLCVDSPPPCMKGSSAA*SFDSCE
Trigger: TTCACAACTGTCAAAGCTCCAAGCAGCACTGCTCCC...TTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTTACTCCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCTGTCAAGAGTTTTGTaGGAACACCTGACATGCCTT +
Preference number: 2 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVLSRVL*EHLTCL
Trigger: AAGGCATGTCAGGTGTTCTCACAAAACTCTTGACAG...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCGCCCCGTTTTCTCTGTaGGCTTCCTCCTTCTTCTTG +
Preference number: 2 (lower is better)
Translates to: MIQMREQRNRTFFILHQPAPFSL*ASSFFL
Trigger: CAAGAAGAAGGAGGAAGCCCACAGAGAAAACGGGGC...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCCAGTGGTGCTGCATTTaGAGAAAGCTTCCATCTCCC +
Preference number: 2 (lower is better)
Translates to: MIQMREQRNRTFFILHQPQWCCI*RKLPSP
Trigger: GGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTG...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACAGATGGCATCAGTTCTaGATCTACAGCTGTGCCAAG +
Preference number: 2 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHRWHQF*IYSCAK
Trigger: CTTGGCACAGCTGTAGATGCAGAACTGATGCCATCT...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp TGTGAAGGAACTAGAGTTTTGATCTTTTTGAACTTTATGCTCCTCTGCAACTGTCTTCTTGTGGGGTGCTaGGGGGACCATCTTGGAACC +
Preference number: 2 (lower is better)
Translates to: CEGTRVLIFLNFMLLCNCLLVGC*GDHLGT
Trigger: GGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAG...ACAGTTGCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCTAGTTCCTTCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp CATTTCAAGTGTTCACTAGCCACATGTGCCTATATGGTTACCATATTGGACACTCCCCTCCTCCATGCATaGAAGCGATGGTCTTTCTAT +
Preference number: 2 (lower is better)
Translates to: HFKCSLATCAYMVTILDTPLLHA*KRWSFY
Trigger: ATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGG...AGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACACTTGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp GCTTATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGCATGGATACCAGTGGTaGTGCATTTGCAGAAAGCTT +
Preference number: 2 (lower is better)
Translates to: AYRSSFERQFFSQDIPRLHGYQW*CICRKL
Trigger: AAGCTTTCTGCAAATGCAGCACCACTGGTATCCATG...CAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGTACCATATTGGACACTaGAGATATAGAACATTTCTG +
Preference number: 2 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKEYHIGH*RYRTFL
Trigger: CAGAAATGTTCTATATCTGCAGTGTCCAATATGGTA...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACAAGTTATTGGGCTGCTaGGGAAGCTCTTTAAAAGGA +
Preference number: 2 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHKLLGC*GSSLKG
Trigger: TCCTTTTAAAGAGCTTCCTCAGCAGCCCAATAACTT...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp TTCCCCTCCTCCATGCATGAAAGCGATGGTCTTTCTATAGGAATCAAATACACATTCCAGCCTTCTTTTTaGAGGCCCAAACTGTCATTG +
Preference number: 2 (lower is better)
Translates to: FPSSMHESDGLSIGIKYTFQPSF*RPKLSL
Trigger: CAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAA...TGTGTATTTGATTCCTATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp GAAAGGAGTAAGGTAGCCTTTCTTTGCGTAGATTCCCCTCCTCCATGCATGAAAGTGCATGGCACACTCTaGGTAAATTTTCTCTCTTAT +
Preference number: 2 (lower is better)
Translates to: ERSKVAFLCVDSPPPCMKVHGTL*VNFLSY
Trigger: ATAAGAGAGAAAATTTACCCAGAGTGTGCCATGCAC...TTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTTACTCCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCTTCATCAAGAGAAACTaGATTTTTGTCAAAGGCAGT +
Preference number: 2 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCFIKRN*IFVKGS
Trigger: ACTGCCTTTGACAAAAATCCAGTTTCTCTTGATGAA...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp TTCCCCTCCTCCATGCATGAAAGCGATGGTCTTTCTATAGGAATCAAATACACAATTCATGGATACCAGTaGTGCTGCATTTGCAGAAAG +
Preference number: 2 (lower is better)
Translates to: FPSSMHESDGLSIGIKYTIHGYQ*CCICRK
Trigger: CTTTCTGCAAATGCAGCACCACTGGTATCCATGAAT...TGTGTATTTGATTCCTATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCATTCATGGATACCAGTaGTGCTGCATTTGCAGAAAG +
Preference number: 2 (lower is better)
Translates to: MIQMREQRNRTFFILHQPIHGYQ*CCICRK
Trigger: CTTTCTGCAAATGCAGCACCACTGGTATCCATGAAT...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp TTCCCCTCCTCCATGCATGAAAGCGATGGTCTTTCTATAGGAATCAAATACACAAGAAAAGCCAGTGCATaGCACACTCTGGGTAAATTT +
Preference number: 2 (lower is better)
Translates to: FPSSMHESDGLSIGIKYTRKASA*HTLGKF
Trigger: AAATTTACCCAGAGTGTGCCATGCACTGGCTTTTCT...TGTGTATTTGATTCCTATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp CATTTCAAGTGTTCACTAGCCACATGTGCCTATATGGTTACCATATTGGACACTCACAGTTCTGGCCAATaGGATGAAGGCAAAAGTTAT +
Preference number: 2 (lower is better)
Translates to: HFKCSLATCAYMVTILDTHSSGQ*DEGKSY
Trigger: ATAACTTTTGCCTTCATCTCATTGGCCAGAACTGTG...AGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACACTTGAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACGACAAGGATATTGACTaGGAGAGGTCAGCCCTGTCA +
Preference number: 2 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDDKDID*ERSALS
Trigger: TGACAGGGCTGACCTCTCTCAGTCAATATCCTTGTC...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp AAATTAGAGAGGAGAGAAATGATACAGATGAGGGAGCAGCGTAATAGAACATTCCCCTCTAGAAAATCCTaGTGTGGGACAAGGATATTG +
Preference number: 2 (lower is better)
Translates to: KLERREMIQMREQRNRTFPSRKS*CGTRIL
Trigger: CAATATCCTTGTCCCACATCAGGATTTTCTAGAGGG...GAATGTTCTATTACGCTGCTCCCTCATCTGTATCATTTCTCTCCTCTCTAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp AATTTTCTCTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTATTCCAGCCTTCTTTTTaGAGGCCCAAACTGTCATTG +
Preference number: 2 (lower is better)
Translates to: NFLSYSVESHQMASVLHLFQPSF*RPKLSL
Trigger: CAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAA...TAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp TGTGAAGGAACTAGAGTTTTGATCTTTTTGAACTTTATGCTCCTCTGCAACTGTAAAAGGAAGTGGATTTaGACTGGCATGCCCCGTTTT +
Preference number: 2 (lower is better)
Translates to: CEGTRVLIFLNFMLLCNCKRKWI*TGMPRF
Trigger: AAAACGGGGCATGCCAGTTCAAATCCACTTCCTTTT...ACAGTTGCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCTAGTTCCTTCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR TCA 90 bp AAATTAGAGAGGAGAGAAATGATACAGATGAGGGAGCAGCGTAATAGAACATTCAAGTTATTGGGCTGCTaGGGAAGCTCTTTAAAAGGA +
Preference number: 2 (lower is better)
Translates to: KLERREMIQMREQRNRTFKLLGC*GSSLKG
Trigger: TCCTTTTAAAGAGCTTCCTCAGCAGCCCAATAACTT...GAATGTTCTATTACGCTGCTCCCTCATCTGTATCATTTCTCTCCTCTCTAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR GCA 90 bp TGGTCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTCCAAGTTTCCACCCCTaGAAGCGAACCAAAAACAAA +
Preference number: 2 (lower is better)
Translates to: WSFYRNQIHKPRLHQNITPSFHP*KRTKNK
Trigger: TTTGTTTTTGGTTCGCTTGCAGGGGTGGAAACTTGG...AGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGACCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp CATTTCAAGTGTTCACTAGCCACATGTGCCTATATGGTTACCATATTGGACACTTTCATCAAGAGAAACTaGATTTTTGTCAAAGGCAGT +
Preference number: 2 (lower is better)
Translates to: HFKCSLATCAYMVTILDTFIKRN*IFVKGS
Trigger: ACTGCCTTTGACAAAAATCCAGTTTCTCTTGATGAA...AGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACACTTGAAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CCA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACGTGCATGGCACACTCTaGGTAAATTTTCTCTCTTAT +
Preference number: 2 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDVHGTL*VNFLSY
Trigger: ATAAGAGAGAAAATTTACCCAGAGTGTGCCATGCAC...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CAA 90 bp CAAGATCCACCATCATCTTCTTCTTCATCAAGAGAAACTGGATTTTaGTCAAAGGCAGTTATATATCCAGCTACAAAAACTACATTTCTC +
Preference number: 2 (lower is better)
Translates to: QDPPSSSSSSRETGF*SKAVIYPATKTTFL
Trigger: GAGAAATGTAGTTTTTGTAGCTGGATATATAACTGCCTTTGACAAAAATCCAGTTTCTCTTGATGAAGAAGAAGATGATGGTGGATCTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR TCA 72 bp TTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCGGCCA +
Preference number: 3 (lower is better)
Translates to: LQAQTVIAAVVP*APVKGSSSARP
Trigger: TGGCCGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000643663.2
3UTR TCA 72 bp TTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCTGGAA +
Preference number: 3 (lower is better)
Translates to: LQAQTVIAAVVP*APVKGSSSALE
Trigger: TTCCAGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000643802.2
3UTR-3UTR CAA 90 bp CCACCAAGGAAGTGCACAGGTACCCAGGGCCCTCTAGAAAATCCTGATGTGGGACCAGTGGTGCTGCATTaGCAGAAAGCTTCCATCTCC +
Preference number: 3 (lower is better)
Translates to: PPRKCTGTQGPLENPDVGPVVLH*QKASIS
Trigger: GGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGG...TCCCACATCAGGATTTTCTAGAGGGCCCTGGGTACCTGTGCACTTCCTTGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR GCA 72 bp GAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCTTTTTaGAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCT +
Preference number: 3 (lower is better)
Translates to: ESFHLPLFQPSF*RPKLSLQLWSP
Trigger: AGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAACAACGGGAGATGGAAGCTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp TCCTTCTTCTTGTGGGGTGCTGCGGGGACCATCTTGGAACCTAGTTCCAAGTTTACAAATCCTGGCACCTaGCCATTCCCAGAAAAGCCA +
Preference number: 3 (lower is better)
Translates to: SFFLWGAAGTILEPSSKFTNPGT*PFPEKP
Trigger: TGGCTTTTCTGGGAATGGCAAGGTGCCAGGATTTGT...AAACTTGGAACTAGGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAGAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR TCA 72 bp GAAGTGCACAGGTACCCAGGGCCCTCTAGAAAATCCTaGTGTGGGACAAGGATATTGACTGAGAGAGGTCAG +
Preference number: 3 (lower is better)
Translates to: EVHRYPGPSRKS*CGTRILTERGQ
Trigger: CTGACCTCTCTCAGTCAATATCCTTGTCCCACATCAGGATTTTCTAGAGGGCCCTGGGTACCTGTGCACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR GCA 72 bp GGTGGAGTCACAGAAAGGAGTAAGGTAGCCTTTCTTTaGGTAGATTCCCCTCCTCCATGCATGAAAGCGATG +
Preference number: 3 (lower is better)
Translates to: GGVTERSKVAFL*VDSPPPCMKAM
Trigger: CATCGCTTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTTACTCCTTTCTGTGACTCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CCA 72 bp ACTCTGCTCACTCTGTCAGAGGGGAGCAGTGCTGCTTaGAGCTTTGACAGTTGTGAAGGAACTAGAGTTTTG +
Preference number: 3 (lower is better)
Translates to: TLLTLSEGSSAA*SFDSCEGTRVL
Trigger: CAAAACTCTAGTTCCTTCACAACTGTCAAAGCTCCAAGCAGCACTGCTCCCCTCTGACAGAGTGAGCAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp TTCCCCTCCTCCATGCATGAAAGCGATGGTCTTTCTATAGGAATCAAATACACAAGGCCCAAACTGTCATaGCAGCTGTGGTCCCCTGAG +
Preference number: 3 (lower is better)
Translates to: FPSSMHESDGLSIGIKYTRPKLS*QLWSPE
Trigger: CTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCT...TGTGTATTTGATTCCTATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGCTTATAGAAGCAGCTTaGAGAGGCAATTCTTCTCCC +
Preference number: 3 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKELIEAA*RGNSSP
Trigger: GGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAG...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp TCCTTCTTCTTGTGGGGTGCTGCGGGGACCATCTTGGAACCTAGTTCCAAGTTTAGATCTGAAGCCATTTaGAACACCCTGACTTTTCAA +
Preference number: 3 (lower is better)
Translates to: SFFLWGAAGTILEPSSKFRSEAI*NTLTFQ
Trigger: TTGAAAAGTCAGGGTGTTCAAAATGGCTTCAGATCT...AAACTTGGAACTAGGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR GCA 72 bp GGAAGCTCTTTAAAAGGAAGTGGATTTGAACTGGCATaGCCCGTTTTCTCTGTGGGCTTCCTCCTTCTTCTT +
Preference number: 3 (lower is better)
Translates to: GSSLKGSGFELA*PVFSVGFLLLL
Trigger: AAGAAGAAGGAGGAAGCCCACAGAGAAAACGGGGCATGCCAGTTCAAATCCACTTCCTTTTAAAGAGCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp TGTGAAGGAACTAGAGTTTTGATCTTTTTGAACTTTATGCTCCTCTGCAACTGTAGGCCCAAACTGTCATaGCAGCTGTGGTCCCCTGAG +
Preference number: 3 (lower is better)
Translates to: CEGTRVLIFLNFMLLCNCRPKLS*QLWSPE
Trigger: CTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCT...ACAGTTGCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCTAGTTCCTTCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp TTCCCCTCCTCCATGCATGAAAGCGATGGTCTTTCTATAGGAATCAAATACACAAGCTTCCATCTCCCGTaGTTCCAGCCTTCTTTTTGC +
Preference number: 3 (lower is better)
Translates to: FPSSMHESDGLSIGIKYTSFHLP*FQPSFC
Trigger: GCAAAAAGAAGGCTGGAACAACGGGAGATGGAAGCT...TGTGTATTTGATTCCTATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp ATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCTCCGTGCTGCTTGGAGCTTaGACAGTTGTGAAGGAACTA +
Preference number: 3 (lower is better)
Translates to: IQMREQRNRTFFILHQPSVLLGA*TVVKEL
Trigger: TAGTTCCTTCACAACTGTCAAAGCTCCAAGCAGCAC...GGAGGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGAGATCTGAAGCCATTTaGAACACCCTGACTTTTCAA +
Preference number: 3 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVRSEAI*NTLTFQ
Trigger: TTGAAAAGTCAGGGTGTTCAAAATGGCTTCAGATCT...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp AAATTAGAGAGGAGAGAAATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTGTGGGACAAGGATATaGACTGAGAGAGGTCAGCCC +
Preference number: 3 (lower is better)
Translates to: KLERREMIQMREQRNRTFCGTRI*TERGQP
Trigger: GGGCTGACCTCTCTCAGTCAATATCCTTGTCCCACA...GAATGTTCTATTACGCTGCTCCCTCATCTGTATCATTTCTCTCCTCTCTAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CCA 72 bp TTGCCATTCCCAGAAAAGCCAGTGCATGGCACACTCTaGGTAAATTTTCTCTCTTATTCTGTAGAATCGCAC +
Preference number: 3 (lower is better)
Translates to: LPFPEKPVHGTL*VNFLSYSVESH
Trigger: GTGCGATTCTACAGAATAAGAGAGAAAATTTACCCAGAGTGTGCCATGCACTGGCTTTTCTGGGAATGGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp CATTTCAAGTGTTCACTAGCCACATGTGCCTATATGGTTACCATATTGGACACTACAGCTGTGCCAAGTTaGGAAATTAGTGCAACAGCC +
Preference number: 3 (lower is better)
Translates to: HFKCSLATCAYMVTILDTTAVPS*EISATA
Trigger: GGCTGTTGCACTAATTTCCAAACTTGGCACAGCTGT...AGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACACTTGAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp AAATTAGAGAGGAGAGAAATGATACAGATGAGGGAGCAGCGTAATAGAACATTCACAAATCCTGGCACCTaGCCATTCCCAGAAAAGCCA +
Preference number: 3 (lower is better)
Translates to: KLERREMIQMREQRNRTFTNPGT*PFPEKP
Trigger: TGGCTTTTCTGGGAATGGCAAGGTGCCAGGATTTGT...GAATGTTCTATTACGCTGCTCCCTCATCTGTATCATTTCTCTCCTCTCTAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp AAATTAGAGAGGAGAGAAATGATACAGATGAGGGAGCAGCGTAATAGAACATTCACAGCTGTGCCAAGTTaGGAAATTAGTGCAACAGCC +
Preference number: 3 (lower is better)
Translates to: KLERREMIQMREQRNRTFTAVPS*EISATA
Trigger: GGCTGTTGCACTAATTTCCAAACTTGGCACAGCTGT...GAATGTTCTATTACGCTGCTCCCTCATCTGTATCATTTCTCTCCTCTCTAATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR-3UTR CAA 90 bp TGTGAAGGAACTAGAGTTTTGATCTTTTTGAACTTTATGCTCCTCTGCAACTGTGTTCCAGCCTTCTTTTaGCAGGCCCAAACTGTCATT +
Preference number: 3 (lower is better)
Translates to: CEGTRVLIFLNFMLLCNCVPAFF*QAQTVI
Trigger: AATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAAC...ACAGTTGCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCTAGTTCCTTCACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR TCA 72 bp AGGAAGGTGAAGTGGAGCAGTACTGCCATTTCTTCATaGTCAATTATCACTAAAATCAGTCACAGGAACTAT +
Preference number: 3 (lower is better)
Translates to: RKVKWSSTAISS*SIITKISHRNY
Trigger: ATAGTTCCTGTGACTGATTTTAGTGATAATTGATCATGAAGAAATGGCAGTACTGCTCCACTTCACCTTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CCA 72 bp AGATCCACCATCATCTTCTTCTTCATCAAGAGAAACTaGATTTTTGTCAAAGGCAGTTATATATCCAGCTAC +
Preference number: 3 (lower is better)
Translates to: RSTIIFFFIKRN*IFVKGSYISSY
Trigger: GTAGCTGGATATATAACTGCCTTTGACAAAAATCCAGTTTCTCTTGATGAAGAAGAAGATGATGGTGGATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp CCACCAAGGAAGTGCACAGGTACCCAGGGCCCTCTAGAAAATCCTGATGTGGGAGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: PPRKCTGTQGPLENPDVGAAVVP*APVKGS
Trigger: GCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGC...TCCCACATCAGGATTTTCTAGAGGGCCCTGGGTACCTGTGCACTTCCTTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp TCCTTCTTCTTGTGGGGTGCTGCGGGGACCATCTTGGAACCTAGTTCCAAGTTTGTTCCCACTCCATGCTaGAGGCGCCGGCGCTCGCTG +
Preference number: 4 (lower is better)
Translates to: SFFLWGAAGTILEPSSKFVPTPC*RRRRSL
Trigger: CAGCGAGCGCCGGCGCCTCCAGCATGGAGTGGGAAC...AAACTTGGAACTAGGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAGAAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp CCACCAAGGAAGTGCACAGGTACCCAGGGCCCTCTAGAAAATCCTGATGTGGGAGGGATACCAAGCCCATaGCTGACCCACACCTCTCCC +
Preference number: 4 (lower is better)
Translates to: PPRKCTGTQGPLENPDVGGIPSP*LTHTSP
Trigger: GGGAGAGGTGTGGGTCAGTCATGGGCTTGGTATCCC...TCCCACATCAGGATTTTCTAGAGGGCCCTGGGTACCTGTGCACTTCCTTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGGCGCCCCGGCCGTGTTaGCCACGGAGTTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKEAPRPC*PRSSSA
Trigger: AGCTGAAGAACTCCGTGGCCAACACGGCCGGGGCGC...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ACTCTCACTGTAACGTTCACCATCCGCTGTCCCAGATTCGAAACCTACCCTGCATTGGTGGCTGGAAGCTaGGAGGCCGCGAGGACGGAG +
Preference number: 4 (lower is better)
Translates to: TLTVTFTIRCPRFETYPALVAGS*EAARTE
Trigger: CTCCGTCCTCGCGGCCTCCCAGCTTCCAGCCACCAA...TGCAGGGTAGGTTTCGAATCTGGGACAGCGGATGGTGAACGTTACAGTGAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR CCA 90 bp TACCAGTGGTGCTGCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCACCGTGGTTGGTGGCTaGAAGCTGGGAGGCCGCGAG +
Preference number: 4 (lower is better)
Translates to: YQWCCICRKLPSPVVPAFTVVGG*KLGGRE
Trigger: CTCGCGGCCTCCCAGCTTCCAGCCACCAACCACGGT...GAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR CCA 90 bp CCACCAAGGAAGTGCACAGGTACCCAGGGCCCTCTAGAAAATCCTGATGTGGGAACTAACCGTGGTTGGTaGCTGGAAGCTGGGAGGCCG +
Preference number: 4 (lower is better)
Translates to: PPRKCTGTQGPLENPDVGTNRGW*LEAGRP
Trigger: CGGCCTCCCAGCTTCCAGCCACCAACCACGGTTAGT...TCCCACATCAGGATTTTCTAGAGGGCCCTGGGTACCTGTGCACTTCCTTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR GCA 90 bp ATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCTCCGTGCCCTCCCGCCAGTaGCCGCACTCGGGTCACACC +
Preference number: 4 (lower is better)
Translates to: IQMREQRNRTFFILHQPSVPSRQ*PHSGHT
Trigger: GGTGTGACCCGAGTGCGGGCACTGGCGGGAGGGCAC...GGAGGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GAAAGGAGTAAGGTAGCCTTTCTTTGCGTAGATTCCCCTCCTCCATGCATGAAACTCGGCTCTGGAAGCTaGGAGGCCGCGAGGACGGAG +
Preference number: 4 (lower is better)
Translates to: ERSKVAFLCVDSPPPCMKLGSGS*EAARTE
Trigger: CTCCGTCCTCGCGGCCTCCCAGCTTCCAGAGCCGAG...TTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTTACTCCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000643802.2
CDS-3UTR GCA 90 bp TACCAGTGGTGCTGCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCCTTCTTGTGGGGTGCTaGGGGGACCATCTTGGAACC +
Preference number: 4 (lower is better)
Translates to: YQWCCICRKLPSPVVPAFLLVGC*GDHLGT
Trigger: GGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAG...GAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCGTGCCCTCCCGCCAGTaGCCGCACTCGGGTCACACC +
Preference number: 4 (lower is better)
Translates to: MIQMREQRNRTFFILHQPVPSRQ*PHSGHT
Trigger: GGTGTGACCCGAGTGCGGGCACTGGCGGGAGGGCAC...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp ATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCTCCGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: IQMREQRNRTFFILHQPSAAVVP*APVKGS
Trigger: GCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGC...GGAGGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGGGGATACCAAGCCCATaGCTGACCCACACCTCTCCC +
Preference number: 4 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVGIPSP*LTHTSP
Trigger: GGGAGAGGTGTGGGTCAGTCATGGGCTTGGTATCCC...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCGTTCCCACTCCATGCTaGAGGCGCCGGCGCTCGCTG +
Preference number: 4 (lower is better)
Translates to: MIQMREQRNRTFFILHQPVPTPC*RRRRSL
Trigger: CAGCGAGCGCCGGCGCCTCCAGCATGGAGTGGGAAC...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CAA 72 bp AGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCTTTTaGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCC +
Preference number: 4 (lower is better)
Translates to: RKLPSPVVPAFF*QAQTVIAAVVP
Trigger: GGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAACAACGGGAGATGGAAGCTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGGTGGGACAAGGATATTaGCTGAGAGAGGTCAGCCCT +
Preference number: 4 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKEVGQGY*LREVSP
Trigger: AGGGCTGACCTCTCTCAGTCAATATCCTTGTCCCAC...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp CTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGTCGGGTCACACCGCTTaGTCTCGGGAGAAGCCCCAA +
Preference number: 4 (lower is better)
Translates to: LLFCRIAPDGISSASTAVSGHTA*SREKPQ
Trigger: TTGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGA...CACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp CATTTCAAGTGTTCACTAGCCACATGTGCCTATATGGTTACCATATTGGACACTGCAGCAGCTCGGCTCTaGAAGCTGGGAGGCCGCGAG +
Preference number: 4 (lower is better)
Translates to: HFKCSLATCAYMVTILDTAAARL*KLGGRE
Trigger: CTCGCGGCCTCCCAGCTTCCAGAGCCGAGCTGCTGC...AGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACACTTGAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643802.2
CDS-3UTR TCA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCGTGGGACAAGGATATTaGCTGAGAGAGGTCAGCCCT +
Preference number: 4 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCVGQGY*LREVSP
Trigger: AGGGCTGACCTCTCTCAGTCAATATCCTTGTCCCAC...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACTCGGGTCACACCGCTTaGTCTCGGGAGAAGCCCCAA +
Preference number: 4 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHSGHTA*SREKPQ
Trigger: TTGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGA...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp CATTTCAAGTGTTCACTAGCCACATGTGCCTATATGGTTACCATATTGGACACTGCGCCCCGGCCGTGTTaGCCACGGAGTTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: HFKCSLATCAYMVTILDTAPRPC*PRSSSA
Trigger: AGCTGAAGAACTCCGTGGCCAACACGGCCGGGGCGC...AGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACACTTGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GATGGGCAGGTTAAATTCATGGATACCAGTGGTGCTGCATTTGCAGAAAGCTTCAGCACTAACCGTGGTTaGTGGCTGGAAGCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: DGQVKFMDTSGAAFAESFSTNRG*WLEAGR
Trigger: CCTCCCAGCTTCCAGCCACCAACCACGGTTAGTGCT...GAAGCTTTCTGCAAATGCAGCACCACTGGTATCCATGAATTTAACCTGCCCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR TCA 90 bp GCTCGGCCAACCCTAAGGCATCTTCCAAATGACTCTCACTGTAACGTTCACCATCCCCTCCTCCATGCATaGAAGCGATGGTCTTTCTAT +
Preference number: 4 (lower is better)
Translates to: ARPTLRHLPNDSHCNVHHPLLHA*KRWSFY
Trigger: ATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGG...ATGGTGAACGTTACAGTGAGAGTCATTTGGAAGATGCCTTAGGGTTGGCCGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR GCA 90 bp GCTCGGCCAACCCTAAGGCATCTTCCAAATGACTCTCACTGTAACGTTCACCATCAGTGGTGCTGCATTTaGAGAAAGCTTCCATCTCCC +
Preference number: 4 (lower is better)
Translates to: ARPTLRHLPNDSHCNVHHQWCCI*RKLPSP
Trigger: GGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTG...ATGGTGAACGTTACAGTGAGAGTCATTTGGAAGATGCCTTAGGGTTGGCCGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR GCA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCTTCTTGTGGGGTGCTaGGGGGACCATCTTGGAACC +
Preference number: 4 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHLLVGC*GDHLGT
Trigger: GGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAG...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GATGGGCAGGTTAAATTCATGGATACCAGTGGTGCTGCATTTGCAGAAAGCTTCCTGTCATTGCAGCTGTaGTCCCCTGAGCACCAGTCA +
Preference number: 4 (lower is better)
Translates to: DGQVKFMDTSGAAFAESFLSLQL*SPEHQS
Trigger: TGACTGGTGCTCAGGGGACCACAGCTGCAATGACAG...GAAGCTTTCTGCAAATGCAGCACCACTGGTATCCATGAATTTAACCTGCCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCGGGAGCAGTGCTGCTTaGAGCTTTGACAGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCGSSAA*SFDSCE
Trigger: TTCACAACTGTCAAAGCTCCAAGCAGCACTGCTCCC...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp TACCAGTGGTGCTGCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCCTGTCAAGAGTTTTGTaGGAACACCTGACATGCCTT +
Preference number: 4 (lower is better)
Translates to: YQWCCICRKLPSPVVPAFLSRVL*EHLTCL
Trigger: AAGGCATGTCAGGTGTTCTCACAAAACTCTTGACAG...GAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp GCTTATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGGTAGAGCAGCAAGTTaGGTTCCCACTCCATGCTGG +
Preference number: 4 (lower is better)
Translates to: AYRSSFERQFFSQDIPRLGRAAS*VPTPCW
Trigger: CCAGCATGGAGTGGGAACTCAACTTGCTGCTCTACC...CAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCAGTGGTGCTGCATTTaGAGAAAGCTTCCATCTCCC +
Preference number: 4 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVQWCCI*RKLPSP
Trigger: GGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTG...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp ACTCTCACTGTAACGTTCACCATCCGCTGTCCCAGATTCGAAACCTACCCTGCACATGGATACCAGTGGTaGTGCATTTGCAGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: TLTVTFTIRCPRFETYPAHGYQW*CICRKL
Trigger: AAGCTTTCTGCAAATGCAGCACCACTGGTATCCATG...TGCAGGGTAGGTTTCGAATCTGGGACAGCGGATGGTGAACGTTACAGTGAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR GCA 90 bp TCCTTCTTCTTGTGGGGTGCTGCGGGGACCATCTTGGAACCTAGTTCCAAGTTTCCAAGTTTCCACCCCTaGAAGCGAACCAAAAACAAA +
Preference number: 4 (lower is better)
Translates to: SFFLWGAAGTILEPSSKFPSFHP*KRTKNK
Trigger: TTTGTTTTTGGTTCGCTTGCAGGGGTGGAAACTTGG...AAACTTGGAACTAGGTTCCAAGATGGTCCCCGCAGCACCCCACAAGAAGAAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GCTTATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGCTGTCATTGCAGCTGTaGTCCCCTGAGCACCAGTCA +
Preference number: 4 (lower is better)
Translates to: AYRSSFERQFFSQDIPRLLSLQL*SPEHQS
Trigger: TGACTGGTGCTCAGGGGACCACAGCTGCAATGACAG...CAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp ACTCTCACTGTAACGTTCACCATCCGCTGTCCCAGATTCGAAACCTACCCTGCACACAGTTCTGGCCAATaGGATGAAGGCAAAAGTTAT +
Preference number: 4 (lower is better)
Translates to: TLTVTFTIRCPRFETYPAHSSGQ*DEGKSY
Trigger: ATAACTTTTGCCTTCATCTCATTGGCCAGAACTGTG...TGCAGGGTAGGTTTCGAATCTGGGACAGCGGATGGTGAACGTTACAGTGAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR TCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGCACAGTTCTGGCCAATaGGATGAAGGCAAAAGTTAT +
Preference number: 4 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKEHSSGQ*DEGKSY
Trigger: ATAACTTTTGCCTTCATCTCATTGGCCAGAACTGTG...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCCTGTCAAGAGTTTTGTaGGAACACCTGACATGCCTT +
Preference number: 4 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCLSRVL*EHLTCL
Trigger: AAGGCATGTCAGGTGTTCTCACAAAACTCTTGACAG...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGGACAAGGATATTGACTaGGAGAGGTCAGCCCTGTCA +
Preference number: 4 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWDKDID*ERSALS
Trigger: TGACAGGGCTGACCTCTCTCAGTCAATATCCTTGTC...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp TACCAGTGGTGCTGCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCTCTGCTGAGTCACTCTaGCTAGGAACACATAATAGT +
Preference number: 4 (lower is better)
Translates to: YQWCCICRKLPSPVVPAFSAESL*LGTHNS
Trigger: ACTATTATGTGTTCCTAGTCAGAGTGACTCAGCAGA...GAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp CTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGACGGAGTTCTTCAGCTaGTTGATGACCACGAAGAGC +
Preference number: 4 (lower is better)
Translates to: LLFCRIAPDGISSASTAVTEFFS*LMTTKS
Trigger: GCTCTTCGTGGTCATCAAGCAGCTGAAGAACTCCGT...CACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGATTCATGGATACCAGTaGTGCTGCATTTGCAGAAAG +
Preference number: 4 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKEIHGYQ*CCICRK
Trigger: CTTTCTGCAAATGCAGCACCACTGGTATCCATGAAT...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp AAGCCCATGACTGACCCACACCTCTCCCAGCTGGTTCTACAACACAAGAAAGAGAGAAAAGCCAGTGCATaGCACACTCTGGGTAAATTT +
Preference number: 4 (lower is better)
Translates to: KPMTDPHLSQLVLQHKKERKASA*HTLGKF
Trigger: AAATTTACCCAGAGTGTGCCATGCACTGGCTTTTCT...CTCTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTGGGTCAGTCATGGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACGCCCCGTTTTCTCTGTaGGCTTCCTCCTTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHAPFSL*ASSFFL
Trigger: CAAGAAGAAGGAGGAAGCCCACAGAGAAAACGGGGC...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp CCACCAAGGAAGTGCACAGGTACCCAGGGCCCTCTAGAAAATCCTGATGTGGGATTCTTTCTTTTCCTCTaGGAGACAAATTCAATGGCA +
Preference number: 4 (lower is better)
Translates to: PPRKCTGTQGPLENPDVGFFLFL*ETNSMA
Trigger: TGCCATTGAATTTGTCTCCCAGAGGAAAAGAAAGAA...TCCCACATCAGGATTTTCTAGAGGGCCCTGGGTACCTGTGCACTTCCTTGGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCACTAGGAAGGTGAAGTaGAGCAGTACTGCCATTTCT +
Preference number: 4 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCTRKVK*SSTAIS
Trigger: AGAAATGGCAGTACTGCTCCACTTCACCTTCCTAGT...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCAAGTTATTGGGCTGCTaGGGAAGCTCTTTAAAAGGA +
Preference number: 4 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCKLLGC*GSSLKG
Trigger: TCCTTTTAAAGAGCTTCCTCAGCAGCCCAATAACTT...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCCCTCTAGAAAATCCTaGTGTGGGACAAGGATATTG +
Preference number: 4 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVPSRKS*CGTRIL
Trigger: CAATATCCTTGTCCCACATCAGGATTTTCTAGAGGG...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGTTCCAGCCTTCTTTTTaGAGGCCCAAACTGTCATTG +
Preference number: 4 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVFQPSF*RPKLSL
Trigger: CAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAA...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp GATGGGCAGGTTAAATTCATGGATACCAGTGGTGCTGCATTTGCAGAAAGCTTCAGATGGCATCAGTTCTaGATCTACAGCTGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: DGQVKFMDTSGAAFAESFRWHQF*IYSCAK
Trigger: CTTGGCACAGCTGTAGATGCAGAACTGATGCCATCT...GAAGCTTTCTGCAAATGCAGCACCACTGGTATCCATGAATTTAACCTGCCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp GAAAGGAGTAAGGTAGCCTTTCTTTGCGTAGATTCCCCTCCTCCATGCATGAAAAGATGGCATCAGTTCTaGATCTACAGCTGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: ERSKVAFLCVDSPPPCMKRWHQF*IYSCAK
Trigger: CTTGGCACAGCTGTAGATGCAGAACTGATGCCATCT...TTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTTACTCCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGGATTCCCCTCCTCCATaGATGAAAGCGATGGTCTTT +
Preference number: 4 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWDSPPP*MKAMVF
Trigger: AAAGACCATCGCTTTCATGCATGGAGGAGGGGAATC...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGCCAAGTTTGGAAAGGCAGGTTAAATTCATaGATACCAGTGGTGCTGCAT +
Preference number: 4 (lower is better)
Translates to: ESHQMASVLHLQLCQVWKGRLNS*IPVVLH
Trigger: ATGCAGCACCACTGGTATCCATGAATTTAACCTGCC...TTTCCAAACTTGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGAGGATATTCCTAGACTaGTGGTGGAGTCACAGAAAG +
Preference number: 4 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVRIFLD*WWSHRK
Trigger: CTTTCTGTGACTCCACCACCAGTCTAGGAATATCCT...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGCACACCTCTCCCAGCTaGTTCTACAACACAAGAAAG +
Preference number: 4 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWHTSPS*FYNTRK
Trigger: CTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTG...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGACTAGGAAGGTGAAGTaGAGCAGTACTGCCATTTCT +
Preference number: 4 (lower is better)
Translates to: ILYPTPTLHKEVTATKEVTRKVK*SSTAIS
Trigger: AGAAATGGCAGTACTGCTCCACTTCACCTTCCTAGT...CACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp TTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGCCATTCCAGCCTTCTTTTTaGAGGCCCAAACTGTCATTG +
Preference number: 4 (lower is better)
Translates to: LFCRIAPDGISSASTAVPFQPSF*RPKLSL
Trigger: CAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAA...TGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCCAAATCCTGGCACCTTaGCATTCCCAGAAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: MIQMREQRNRTFFILHQPQILAP*HSQKSQ
Trigger: CTGGCTTTTCTGGGAATGGCAAGGTGCCAGGATTTG...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp GCTTATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGAAGGTAGCCTTTCTTTaGGTAGATTCCCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: AYRSSFERQFFSQDIPRLKVAFL*VDSPPP
Trigger: TGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTT...CAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGCCAAGTTTGGAAAATTCATGGATACCAGTaGTGCTGCATTTGCAGAAAG +
Preference number: 4 (lower is better)
Translates to: ESHQMASVLHLQLCQVWKIHGYQ*CCICRK
Trigger: CTTTCTGCAAATGCAGCACCACTGGTATCCATGAAT...TTTCCAAACTTGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGATATTCCTAGACTGGTaGTGGAGTCACAGAAAGGAG +
Preference number: 4 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWIFLDW*WSHRKE
Trigger: CTCCTTTCTGTGACTCCACCACCAGTCTAGGAATAT...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp CTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGAGGATATTCCTAGACTaGTGGTGGAGTCACAGAAAG +
Preference number: 4 (lower is better)
Translates to: LLFCRIAPDGISSASTAVRIFLD*WWSHRK
Trigger: CTTTCTGTGACTCCACCACCAGTCTAGGAATATCCT...CACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCACACCTCTCCCAGCTaGTTCTACAACACAAGAAAG +
Preference number: 4 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHHTSPS*FYNTRK
Trigger: CTTTCTTGTGTTGTAGAACCAGCTGGGAGAGGTGTG...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGCAAAATAATCTCTGCTaGGTCACTCTGACTAGGAAC +
Preference number: 4 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWQNNLC*VTLTRN
Trigger: GTTCCTAGTCAGAGTGACTCAGCAGAGATTATTTTG...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCTCCATATTCCTAGACTGGTaGTGGAGTCACAGAAAGGAG +
Preference number: 4 (lower is better)
Translates to: IQMREQRNRTFFILHQPSIFLDW*WSHRKE
Trigger: CTCCTTTCTGTGACTCCACCACCAGTCTAGGAATAT...GGAGGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GCTCGGCCAACCCTAAGGCATCTTCCAAATGACTCTCACTGTAACGTTCACCATTTCTTTCTTTTCCTCTaGGAGACAAATTCAATGGCA +
Preference number: 4 (lower is better)
Translates to: ARPTLRHLPNDSHCNVHHFFLFL*ETNSMA
Trigger: TGCCATTGAATTTGTCTCCCAGAGGAAAAGAAAGAA...ATGGTGAACGTTACAGTGAGAGTCATTTGGAAGATGCCTTAGGGTTGGCCGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR TCA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACTGTCCTGATAAGATCTaGAGCCATTTTGAACACCCT +
Preference number: 4 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHCPDKI*SHFEHP
Trigger: AGGGTGTTCAAAATGGCTTCAGATCTTATCAGGACA...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp AAATTAGAGAGGAGAGAAATGATACAGATGAGGGAGCAGCGTAATAGAACATTCGACAAGGATATTGACTaGGAGAGGTCAGCCCTGTCA +
Preference number: 4 (lower is better)
Translates to: KLERREMIQMREQRNRTFDKDID*ERSALS
Trigger: TGACAGGGCTGACCTCTCTCAGTCAATATCCTTGTC...GAATGTTCTATTACGCTGCTCCCTCATCTGTATCATTTCTCTCCTCTCTAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp ATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCTCCCAAAATAATCTCTGCTaGGTCACTCTGACTAGGAAC +
Preference number: 4 (lower is better)
Translates to: IQMREQRNRTFFILHQPSQNNLC*VTLTRN
Trigger: GTTCCTAGTCAGAGTGACTCAGCAGAGATTATTTTG...GGAGGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACGGTAGAGCAGCAAGTTaGGTTCCCACTCCATGCTGG +
Preference number: 4 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDGRAAS*VPTPCW
Trigger: CCAGCATGGAGTGGGAACTCAACTTGCTGCTCTACC...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp TTCCCCTCCTCCATGCATGAAAGCGATGGTCTTTCTATAGGAATCAAATACACACCAAGTTTCCACCCCTaGAAGCGAACCAAAAACAAA +
Preference number: 4 (lower is better)
Translates to: FPSSMHESDGLSIGIKYTPSFHP*KRTKNK
Trigger: TTTGTTTTTGGTTCGCTTGCAGGGGTGGAAACTTGG...TGTGTATTTGATTCCTATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp AAATTAGAGAGGAGAGAAATGATACAGATGAGGGAGCAGCGTAATAGAACATTCACGGAGTTCTTCAGCTaGTTGATGACCACGAAGAGC +
Preference number: 4 (lower is better)
Translates to: KLERREMIQMREQRNRTFTEFFS*LMTTKS
Trigger: GCTCTTCGTGGTCATCAAGCAGCTGAAGAACTCCGT...GAATGTTCTATTACGCTGCTCCCTCATCTGTATCATTTCTCTCCTCTCTAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp TGTGAAGGAACTAGAGTTTTGATCTTTTTGAACTTTATGCTCCTCTGCAACTGTATTCGAAACCTACCCTaGACGGCAATCCGCAAGCAC +
Preference number: 4 (lower is better)
Translates to: CEGTRVLIFLNFMLLCNCIRNLP*TAIRKH
Trigger: GTGCTTGCGGATTGCCGTGCAGGGTAGGTTTCGAAT...ACAGTTGCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCTAGTTCCTTCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR CCA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGGTGCATGGCACACTCTaGGTAAATTTTCTCTCTTAT +
Preference number: 4 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWVHGTL*VNFLSY
Trigger: ATAAGAGAGAAAATTTACCCAGAGTGTGCCATGCAC...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGGGGAGACAAATTCAATaGCAAGCTAGAATAGTGAAG +
Preference number: 4 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWGRQIQ*QARIVK
Trigger: CTTCACTATTCTAGCTTGCCATTGAATTTGTCTCCC...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp CATTTCAAGTGTTCACTAGCCACATGTGCCTATATGGTTACCATATTGGACACTAAAAGGAAGTGGATTTaGACTGGCATGCCCCGTTTT +
Preference number: 4 (lower is better)
Translates to: HFKCSLATCAYMVTILDTKRKWI*TGMPRF
Trigger: AAAACGGGGCATGCCAGTTCAAATCCACTTCCTTTT...AGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACACTTGAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp AATTTTCTCTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTAGATTCCCCTCCTCCATaGATGAAAGCGATGGTCTTT +
Preference number: 4 (lower is better)
Translates to: NFLSYSVESHQMASVLHLDSPPP*MKAMVF
Trigger: AAAGACCATCGCTTTCATGCATGGAGGAGGGGAATC...TAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp TTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGCCATTCACTAGCCACATGTaGCTATATGGTTACCATATT +
Preference number: 4 (lower is better)
Translates to: LFCRIAPDGISSASTAVPFTSHM*LYGYHI
Trigger: AATATGGTAACCATATAGGCACATGTGGCTAGTGAA...TGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCAGAAAAGCCAGTGCATaGCACACTCTGGGTAAATTT +
Preference number: 4 (lower is better)
Translates to: MIQMREQRNRTFFILHQPRKASA*HTLGKF
Trigger: AAATTTACCCAGAGTGTGCCATGCACTGGCTTTTCT...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp TGGTCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGCCCCGTTTTCTCTGTaGGCTTCCTCCTTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: WSFYRNQIHKPRLHQNITAPFSL*ASSFFL
Trigger: CAAGAAGAAGGAGGAAGCCCACAGAGAAAACGGGGC...AGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GCTTATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGGGAGACAAATTCAATaGCAAGCTAGAATAGTGAAG +
Preference number: 4 (lower is better)
Translates to: AYRSSFERQFFSQDIPRLGRQIQ*QARIVK
Trigger: CTTCACTATTCTAGCTTGCCATTGAATTTGTCTCCC...CAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CAA 72 bp ATATCCAGCTACAAAAACTACATTTCTCAGACAATCTaGCAGATAGCAGTAGCCAATGACACAGTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: ISSYKNYISQTI*QIAVANDTVLA
Trigger: GGCCAGAACTGTGTCATTGGCTACTGCTATCTGCAAGATTGTCTGAGAAATGTAGTTTTTGTAGCTGGATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACCCCCTCCTCCATGCATaGAAGCGATGGTCTTTCTAT +
Preference number: 4 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDPLLHA*KRWSFY
Trigger: ATAGAAAGACCATCGCTTTCATGCATGGAGGAGGGG...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp GAAAGGAGTAAGGTAGCCTTTCTTTGCGTAGATTCCCCTCCTCCATGCATGAAATTCATCAAGAGAAACTaGATTTTTGTCAAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: ERSKVAFLCVDSPPPCMKFIKRN*IFVKGS
Trigger: ACTGCCTTTGACAAAAATCCAGTTTCTCTTGATGAA...TTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTTACTCCTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACGGGAGCAGTGCTGCTTaGAGCTTTGACAGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDGSSAA*SFDSCE
Trigger: TTCACAACTGTCAAAGCTCCAAGCAGCACTGCTCCC...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp CTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGGCTAGTAGCCCCATTTaGCTATCTGAATTTAAATTA +
Preference number: 4 (lower is better)
Translates to: LLFCRIAPDGISSASTAVASSPI*LSEFKL
Trigger: TAATTTAAATTCAGATAGCCAAATGGGGCTACTAGC...CACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp AATTTTCTCTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTATGTCCTGATAAGATCTaGAGCCATTTTGAACACCCT +
Preference number: 4 (lower is better)
Translates to: NFLSYSVESHQMASVLHLCPDKI*SHFEHP
Trigger: AGGGTGTTCAAAATGGCTTCAGATCTTATCAGGACA...TAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp TGTGAAGGAACTAGAGTTTTGATCTTTTTGAACTTTATGCTCCTCTGCAACTGTCCCTCTAGAAAATCCTaGTGTGGGACAAGGATATTG +
Preference number: 4 (lower is better)
Translates to: CEGTRVLIFLNFMLLCNCPSRKS*CGTRIL
Trigger: CAATATCCTTGTCCCACATCAGGATTTTCTAGAGGG...ACAGTTGCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCTAGTTCCTTCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp AATTTTCTCTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTATCTGCTGAGTCACTCTaGCTAGGAACACATAATAGT +
Preference number: 4 (lower is better)
Translates to: NFLSYSVESHQMASVLHLSAESL*LGTHNS
Trigger: ACTATTATGTGTTCCTAGTCAGAGTGACTCAGCAGA...TAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACAAGGTAGCCTTTCTTTaGGTAGATTCCCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDKVAFL*VDSPPP
Trigger: TGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTT...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CAA 72 bp GCTTGGAGCTTTGACAGTTGTGAAGGAACTAGAGTTTaGATCTTTTTGAACTTTATGCTCCTCTGCAACTGT +
Preference number: 4 (lower is better)
Translates to: AWSFDSCEGTRV*IFLNFMLLCNC
Trigger: ACAGTTGCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCTAGTTCCTTCACAACTGTCAAAGCTCCAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CAA 72 bp TGTTCACTAGCCACATGTGCCTATATGGTTACCATATaGGACACTGCAGATATAGAACATTTCTGTCATCAC +
Preference number: 4 (lower is better)
Translates to: CSLATCAYMVTI*DTADIEHFCHH
Trigger: GTGATGACAGAAATGTTCTATATCTGCAGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR TCA 90 bp TGTGAAGGAACTAGAGTTTTGATCTTTTTGAACTTTATGCTCCTCTGCAACTGTAAGTTATTGGGCTGCTaGGGAAGCTCTTTAAAAGGA +
Preference number: 4 (lower is better)
Translates to: CEGTRVLIFLNFMLLCNCKLLGC*GSSLKG
Trigger: TCCTTTTAAAGAGCTTCCTCAGCAGCCCAATAACTT...ACAGTTGCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCTAGTTCCTTCACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCGCTAGTAGCCCCATTTaGCTATCTGAATTTAAATTA +
Preference number: 4 (lower is better)
Translates to: MIQMREQRNRTFFILHQPASSPI*LSEFKL
Trigger: TAATTTAAATTCAGATAGCCAAATGGGGCTACTAGC...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp CATTTCAAGTGTTCACTAGCCACATGTGCCTATATGGTTACCATATTGGACACTTACCATATTGGACACTaGAGATATAGAACATTTCTG +
Preference number: 4 (lower is better)
Translates to: HFKCSLATCAYMVTILDTYHIGH*RYRTFL
Trigger: CAGAAATGTTCTATATCTGCAGTGTCCAATATGGTA...AGTGTCCAATATGGTAACCATATAGGCACATGTGGCTAGTGAACACTTGAAATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp AATTTTCTCTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTATACCATATTGGACACTaGAGATATAGAACATTTCTG +
Preference number: 4 (lower is better)
Translates to: NFLSYSVESHQMASVLHLYHIGH*RYRTFL
Trigger: CAGAAATGTTCTATATCTGCAGTGTCCAATATGGTA...TAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR GCA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACTTCACTAGCCACATGTaGCTATATGGTTACCATATT +
Preference number: 4 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDFTSHM*LYGYHI
Trigger: AATATGGTAACCATATAGGCACATGTGGCTAGTGAA...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
3UTR CAA 72 bp CCATCATCTTCTTCTTCATCAAGAGAAACTGGATTTTaGTCAAAGGCAGTTATATATCCAGCTACAAAAACT +
Preference number: 4 (lower is better)
Translates to: PSSSSSSRETGF*SKAVIYPATKT
Trigger: AGTTTTTGTAGCTGGATATATAACTGCCTTTGACAAAAATCCAGTTTCTCTTGATGAAGAAGAAGATGATGG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CCA 90 bp TGGTCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTTTCATCAAGAGAAACTaGATTTTTGTCAAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: WSFYRNQIHKPRLHQNITFIKRN*IFVKGS
Trigger: ACTGCCTTTGACAAAAATCCAGTTTCTCTTGATGAA...AGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGACCA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS GCA 90 bp GGAGACCCAGCCCAGCGCCCGCGCAGCTCGGTGCCCTCCCGCCAGTaGCCGCACTCGGGTCACACCGCTTGCTCTCGGGAGAAGCCCCAA +
Preference number: 5 (lower is better)
Translates to: GDPAQRPRSSVPSRQ*PHSGHTACSREKPQ
Trigger: TTGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGAGTGCGGGCACTGGCGGGAGGGCACCGAGCTGCGCGGGCGCTGGGCTGGGTCTCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS GCA 90 bp CGGAGAATCGAGGCGGAGACCCAGCCCAGCGCCCGCGCAGCTCGGTaGCCTCCCGCCAGTGCCCGCACTCGGGTCACACCGCTTGCTCTC +
Preference number: 5 (lower is better)
Translates to: RRIEAETQPSARAAR*PPASARTRVTPLAL
Trigger: GAGAGCAAGCGGTGTGACCCGAGTGCGGGCACTGGCGGGAGGGCACCGAGCTGCGCGGGCGCTGGGCTGGGTCTCCGCCTCGATTCTCCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS GCA 90 bp AGCTCGGTGCCCTCCCGCCAGTGCCCGCACTCGGGTCACACCGCTTaGTCTCGGGAGAAGCCCCAAGGCTCGCGGTGCACCGAGAGGCGC +
Preference number: 5 (lower is better)
Translates to: SSVPSRQCPHSGHTA*SREKPQGSRCTERR
Trigger: GCGCCTCTCGGTGCACCGCGAGCCTTGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGAGTGCGGGCACTGGCGGGAGGGCACCGAGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS CCA 90 bp CGGGAGAAGCCCCAAGGCTCGCGGTGCACCGAGAGGCGCCCGGGCTaGAGCGCCCCGGCCGTGTTGGCCACGGAGTTCTTCAGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: REKPQGSRCTERRPG*SAPAVLATEFFSCL
Trigger: CAAGCAGCTGAAGAACTCCGTGGCCAACACGGCCGGGGCGCTCCAGCCCGGGCGCCTCTCGGTGCACCGCGAGCCTTGGGGCTTCTCCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS TCA 90 bp TCCGTGCTTTGCCTCCCCCGGCTCCGAGGAAACGCGCCAAGGAGCTaGGGAAATCCGGCGCAGACTCTCCCAGCTGGCACCAAAGCCTTC +
Preference number: 5 (lower is better)
Translates to: SVLCLPRLRGNAPRS*GNPAQTLPAGTKAF
Trigger: GAAGGCTTTGGTGCCAGCTGGGAGAGTCTGCGCCGGATTTCCTCAGCTCCTTGGCGCGTTTCCTCGGAGCCGGGGGAGGCAAAGCACGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS TCA 90 bp GCCTTCTTTTTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCTCCCGCACTCCCGC +
Preference number: 5 (lower is better)
Translates to: AFFLQAQTVIAAVVP*APVKGSSSALPHSR
Trigger: GCGGGAGTGCGGGAGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS TCA 90 bp GCCTTCTTTTTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCGTCCCTGGCACCCG +
Preference number: 5 (lower is better)
Translates to: AFFLQAQTVIAAVVP*APVKGSSSARPWHP
Trigger: CGGGTGCCAGGGACGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000505198.5
CDS TCA 90 bp GTAAGAAGAGCAGGAAGAAGAAGAGCGCCAGGTAGAGCAGCAAGTTaGGTTCCCACTCCATGCTGGAGGCGCCGGCGCTCGCTGGCCCTG +
Preference number: 5 (lower is better)
Translates to: VRRAGRRRAPGRAAS*VPTPCWRRRRSLAL
Trigger: CAGGGCCAGCGAGCGCCGGCGCCTCCAGCATGGAGTGGGAACTCAACTTGCTGCTCTACCTGGCGCTCTTCTTCTTCCTGCTCTTCTTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS TCA 90 bp GCCTTCTTTTTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCCTGCACGGCAATCC +
Preference number: 5 (lower is better)
Translates to: AFFLQAQTVIAAVVP*APVKGSSSAPARQS
Trigger: GGATTGCCGTGCAGGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394396.5
CDS-3UTR CAA 90 bp TACCAGTGGTGCTGCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCAGGCCCAAACTGTCATaGCAGCTGTGGTCCCCTGAG +
Preference number: 5 (lower is better)
Translates to: YQWCCICRKLPSPVVPAFRPKLS*QLWSPE
Trigger: CTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCT...GAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp GCTTATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGAGCGCCCCGGCCGTGTaGGCCACGGAGTTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: AYRSSFERQFFSQDIPRLSAPAV*ATEFFS
Trigger: GCTGAAGAACTCCGTGGCCAACACGGCCGGGGCGCT...CAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp GAAAGGAGTAAGGTAGCCTTTCTTTGCGTAGATTCCCCTCCTCCATGCATGAAACTCGGGTCACACCGCTaGCTCTCGGGAGAAGCCCCA +
Preference number: 5 (lower is better)
Translates to: ERSKVAFLCVDSPPPCMKLGSHR*LSGEAP
Trigger: TGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGAG...TTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGCTACCTTACTCCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCAGGCCCAAACTGTCATaGCAGCTGTGGTCCCCTGAG +
Preference number: 5 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCRPKLS*QLWSPE
Trigger: CTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCT...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp ATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCTCCCTCGGGTCACACCGCTaGCTCTCGGGAGAAGCCCCA +
Preference number: 5 (lower is better)
Translates to: IQMREQRNRTFFILHQPSLGSHR*LSGEAP
Trigger: TGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGAG...GGAGGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCGAGTTCTTCAGCTGCTaGATGACCACGAAGAGCAGG +
Preference number: 5 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCEFFSC*MTTKSR
Trigger: CCTGCTCTTCGTGGTCATCAAGCAGCTGAAGAACTC...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp ACTCTCACTGTAACGTTCACCATCCGCTGTCCCAGATTCGAAACCTACCCTGCAGTTCCAGCCTTCTTTTaGCAGGCCCAAACTGTCATT +
Preference number: 5 (lower is better)
Translates to: TLTVTFTIRCPRFETYPAVPAFF*QAQTVI
Trigger: AATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAAC...TGCAGGGTAGGTTTCGAATCTGGGACAGCGGATGGTGAACGTTACAGTGAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS-3UTR CAA 90 bp TACCAGTGGTGCTGCATTTGCAGAAAGCTTCCATCTCCCGTTGTTCCAGCCTTCGTGCTGCTTGGAGCTTaGACAGTTGTGAAGGAACTA +
Preference number: 5 (lower is better)
Translates to: YQWCCICRKLPSPVVPAFVLLGA*TVVKEL
Trigger: TAGTTCCTTCACAACTGTCAAAGCTCCAAGCAGCAC...GAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCAAGGAAGTGCGTTCCAGCCTTCTTTTaGCAGGCCCAAACTGTCATT +
Preference number: 5 (lower is better)
Translates to: FFILHQPSTKRLRPPRKCVPAFF*QAQTVI
Trigger: AATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAAC...GCACTTCCTTGGTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp ATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGGTGGCCAGTGGTGCTGCATTaGCAGAAAGCTTCCATCTCC +
Preference number: 5 (lower is better)
Translates to: IEAALRGNSSPRIFLDWWPVVLH*QKASIS
Trigger: GGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGG...CCACCAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp GAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGCCAAGTTTGGAAAACAAATCCTGGCACCTaGCCATTCCCAGAAAAGCCA +
Preference number: 5 (lower is better)
Translates to: ESHQMASVLHLQLCQVWKTNPGT*PFPEKP
Trigger: TGGCTTTTCTGGGAATGGCAAGGTGCCAGGATTTGT...TTTCCAAACTTGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGCCATGTGGGACAAGGATATaGACTGAGAGAGGTCAGCCC +
Preference number: 5 (lower is better)
Translates to: LFCRIAPDGISSASTAVPCGTRI*TERGQP
Trigger: GGGCTGACCTCTCTCAGTCAATATCCTTGTCCCACA...TGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TGGTCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTAGCGCCCCGGCCGTGTaGGCCACGGAGTTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: WSFYRNQIHKPRLHQNITSAPAV*ATEFFS
Trigger: GCTGAAGAACTCCGTGGCCAACACGGCCGGGGCGCT...AGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACCCAGTGGTGCTGCATTaGCAGAAAGCTTCCATCTCC +
Preference number: 5 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHPVVLH*QKASIS
Trigger: GGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGG...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp GCTTATAGAAGCAGCTTTGAGAGGCAATTCTTCTCCCAGGATATTCCTAGACTGTGTGGGACAAGGATATaGACTGAGAGAGGTCAGCCC +
Preference number: 5 (lower is better)
Translates to: AYRSSFERQFFSQDIPRLCGTRI*TERGQP
Trigger: GGGCTGACCTCTCTCAGTCAATATCCTTGTCCCACA...CAGTCTAGGAATATCCTGGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp GTAATAGAACATTCTTTATCCTACACCAACCCTCCACAAAGAGGTTACGGCCACAGCTTCCATCTCCCGTaGTTCCAGCCTTCTTTTTGC +
Preference number: 5 (lower is better)
Translates to: VIEHSLSYTNPPQRGYGHSFHLP*FQPSFC
Trigger: GCAAAAAGAAGGCTGGAACAACGGGAGATGGAAGCT...GTGGCCGTAACCTCTTTGTGGAGGGTTGGTGTAGGATAAAGAATGTTCTATTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp CTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGACAGCTGTGCCAAGTTaGGAAATTAGTGCAACAGCC +
Preference number: 5 (lower is better)
Translates to: LLFCRIAPDGISSASTAVTAVPS*EISATA
Trigger: GGCTGTTGCACTAATTTCCAAACTTGGCACAGCTGT...CACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp ATGATACAGATGAGGGAGCAGCGTAATAGAACATTCTTTATCCTACACCAACCCCTTATAGAAGCAGCTTaGAGAGGCAATTCTTCTCCC +
Preference number: 5 (lower is better)
Translates to: MIQMREQRNRTFFILHQPLIEAA*RGNSSP
Trigger: GGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAG...GGGTTGGTGTAGGATAAAGAATGTTCTATTACGCTGCTCCCTCATCTGTATCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTACAGCTGTGCCAAGAGTTTTGATCTTTTaGAACTTTATGCTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: LFCRIAPDGISSASTAVPRVLIF*NFMLLC
Trigger: GCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCT...TGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACGAGTTCTTCAGCTGCTaGATGACCACGAAGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDEFFSC*MTTKSR
Trigger: CCTGCTCTTCGTGGTCATCAAGCAGCTGAAGAACTC...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TGGTCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGTGCTGCTTGGAGCTTaGACAGTTGTGAAGGAACTA +
Preference number: 5 (lower is better)
Translates to: WSFYRNQIHKPRLHQNITVLLGA*TVVKEL
Trigger: TAGTTCCTTCACAACTGTCAAAGCTCCAAGCAGCAC...AGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTGACCTTATAGAAGCAGCTTaGAGAGGCAATTCTTCTCCC +
Preference number: 5 (lower is better)
Translates to: SFYRNQIHKPRLHQNITDLIEAA*RGNSSP
Trigger: GGGAGAAGAATTGCCTCTCAAAGCTGCTTCTATAAG...GTCAGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS TCA 90 bp CTGAGAGATTGGATTAATACTGAGATGGTAATAAACTACTCACCCTaGCTTTTCAATAGTCTCTTGTTTAGGAAGAATGATGGGCAGGTT +
Preference number: 5 (lower is better)
Translates to: LRDWINTEMVINYSP*LFNSLLFRKNDGQV
Trigger: AACCTGCCCATCATTCTTCCTAAACAAGAGACTATTGAAAAGTCAGGGTGAGTAGTTTATTACCATCTCAGTATTAATCCAATCTCTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506551.2
CDS-3UTR CAA 90 bp AATTTTCTCTCTTATTCTGTAGAATCGCACCAGATGGCATCAGTTCTGCATCTAAGAGTTTTGATCTTTTaGAACTTTATGCTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: NFLSYSVESHQMASVLHLRVLIF*NFMLLC
Trigger: GCAGAGGAGCATAAAGTTCAAAAAGATCAAAACTCT...TAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS-3UTR CAA 90 bp TGGTCTTTCTATAGGAATCAAATACACAAACCCAGACTCCACCAAAATATAACTAGATCTGAAGCCATTTaGAACACCCTGACTTTTCAA +
Preference number: 5 (lower is better)
Translates to: WSFYRNQIHKPRLHQNITRSEAI*NTLTFQ
Trigger: TTGAAAAGTCAGGGTGTTCAAAATGGCTTCAGATCT...AGTTATATTTTGGTGGAGTCTGGGTTTGTGTATTTGATTCCTATAGAAAGACCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000643663.2
ENST00000643802.2
CDS GCA 72 bp CCACTCCATGCTGGAGGCGCCGGCGCTCGCTGGCCCTaGGCGCTCGGCGCGGGCTGCAGCTGGAGGGCGAGC +
Preference number: 6 (lower is better)
Translates to: PLHAGGAGARWP*ALGAGCSWRAS
Trigger: GCTCGCCCTCCAGCTGCAGCCCGCGCCGAGCGCGCAGGGCCAGCGAGCGCCGGCGCCTCCAGCATGGAGTGG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000643663.2
CDS GCA 72 bp GAGGCGGAGACCCAGCCCAGCGCCCGCGCAGCTCGGTaGCCTCCCGCCAGTGCCCGCACTCGGGTCACACCG +
Preference number: 6 (lower is better)
Translates to: EAETQPSARAAR*PPASARTRVTP
Trigger: CGGTGTGACCCGAGTGCGGGCACTGGCGGGAGGGCACCGAGCTGCGCGGGCGCTGGGCTGGGTCTCCGCCTC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS CCA 72 bp TCCCGCACTCCCGCCCCTCGCGAGGGCGTCCCGCTATaGGCGCCGACTCCGGGGTCCGTGCTTTGCCTCCCC +
Preference number: 6 (lower is better)
Translates to: SRTPAPREGVPL*APTPGSVLCLP
Trigger: GGGGAGGCAAAGCACGGACCCCGGAGTCGGCGCCCATAGCGGGACGCCCTCGCGAGGGGCGGGAGTGCGGGA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS CAA 90 bp CAGCTCGGTGCCCTCCCGCCAGTGCCCGCACTCGGGTCACACCGCTaGCTCTCGGGAGAAGCCCCAAGGCTCGCGGTGCACCGAGAGGCG +
Preference number: 6 (lower is better)
Translates to: QLGALPPVPALGSHR*LSGEAPRLAVHREA
Trigger: CGCCTCTCGGTGCACCGCGAGCCTTGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGAGTGCGGGCACTGGCGGGAGGGCACCGAGCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS GCA 72 bp GTCCCGCTATGGGCGCCGACTCCGGGGTCCGTGCTTTaGCTCCCCCGGCTCCGAGGAAACGCGCCAAGGAGC +
Preference number: 6 (lower is better)
Translates to: VPLWAPTPGSVL*LPRLRGNAPRS
Trigger: GCTCCTTGGCGCGTTTCCTCGGAGCCGGGGGAGGCAAAGCACGGACCCCGGAGTCGGCGCCCATAGCGGGAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS GCA 72 bp AGGGCGTCCCGCTATGGGCGCCGACTCCGGGGTCCGTaGTTTGCCTCCCCCGGCTCCGAGGAAACGCGCCAA +
Preference number: 6 (lower is better)
Translates to: RASRYGRRLRGP*FASPGSEETRQ
Trigger: TTGGCGCGTTTCCTCGGAGCCGGGGGAGGCAAAGCACGGACCCCGGAGTCGGCGCCCATAGCGGGACGCCCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS GCA 72 bp CCCTCCCGCCAGTGCCCGCACTCGGGTCACACCGCTTaGTCTCGGGAGAAGCCCCAAGGCTCGCGGTGCACC +
Preference number: 6 (lower is better)
Translates to: PSRQCPHSGHTA*SREKPQGSRCT
Trigger: GGTGCACCGCGAGCCTTGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGAGTGCGGGCACTGGCGGGAGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS CAA 72 bp CGTCCCGCTATGGGCGCCGACTCCGGGGTCCGTGCTTaGCCTCCCCCGGCTCCGAGGAAACGCGCCAAGGAG +
Preference number: 6 (lower is better)
Translates to: RPAMGADSGVRA*PPPAPRKRAKE
Trigger: CTCCTTGGCGCGTTTCCTCGGAGCCGGGGGAGGCAAAGCACGGACCCCGGAGTCGGCGCCCATAGCGGGACG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS CAA 72 bp GCCCTCCCGCCAGTGCCCGCACTCGGGTCACACCGCTaGCTCTCGGGAGAAGCCCCAAGGCTCGCGGTGCAC +
Preference number: 6 (lower is better)
Translates to: ALPPVPALGSHR*LSGEAPRLAVH
Trigger: GTGCACCGCGAGCCTTGGGGCTTCTCCCGAGAGCAAGCGGTGTGACCCGAGTGCGGGCACTGGCGGGAGGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS CAA 90 bp TCGCGAGGGCGTCCCGCTATGGGCGCCGACTCCGGGGTCCGTGCTTaGCCTCCCCCGGCTCCGAGGAAACGCGCCAAGGAGCTGAGGAAA +
Preference number: 6 (lower is better)
Translates to: SRGRPAMGADSGVRA*PPPAPRKRAKELRK
Trigger: TTTCCTCAGCTCCTTGGCGCGTTTCCTCGGAGCCGGGGGAGGCAAAGCACGGACCCCGGAGTCGGCGCCCATAGCGGGACGCCCTCGCGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS TCA 72 bp TGCCTCCCCCGGCTCCGAGGAAACGCGCCAAGGAGCTaGGGAAATCCGGCGCAGACTCTCCCAGCTGGCACC +
Preference number: 6 (lower is better)
Translates to: CLPRLRGNAPRS*GNPAQTLPAGT
Trigger: GGTGCCAGCTGGGAGAGTCTGCGCCGGATTTCCTCAGCTCCTTGGCGCGTTTCCTCGGAGCCGGGGGAGGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS CAA 90 bp CTGGCACCAAAGCCTTCCGCTTCGCCGAGATCCTCTCAGGTGCTCTaGAGGACGCGAGCGACTTCCCTAGGAGCGAACTTCCGCGGGCAC +
Preference number: 6 (lower is better)
Translates to: LAPKPSASPRSSQVL*RTRATSLGANFRGH
Trigger: GTGCCCGCGGAAGTTCGCTCCTAGGGAAGTCGCTCGCGTCCTCAAGAGCACCTGAGAGGATCTCGGCGAAGCGGAAGGCTTTGGTGCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000394394.5
ENST00000513254.5
CDS TCA 72 bp TTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCTCCCG +
Preference number: 6 (lower is better)
Translates to: LQAQTVIAAVVP*APVKGSSSALP
Trigger: CGGGAGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS TCA 72 bp GCAGGAAGAAGAAGAGCGCCAGGTAGAGCAGCAAGTTaGGTTCCCACTCCATGCTGGAGGCGCCGGCGCTCG +
Preference number: 6 (lower is better)
Translates to: AGRRRAPGRAAS*VPTPCWRRRRS
Trigger: CGAGCGCCGGCGCCTCCAGCATGGAGTGGGAACTCAACTTGCTGCTCTACCTGGCGCTCTTCTTCTTCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS TCA 72 bp TTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCGTCCC +
Preference number: 6 (lower is better)
Translates to: LQAQTVIAAVVP*APVKGSSSARP
Trigger: GGGACGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505198.5
CDS TCA 72 bp TTGCAGGCCCAAACTGTCATTGCAGCTGTGGTCCCCTaGGCACCAGTCAAGGGCAGCAGCTCGGCTCCTGCA +
Preference number: 6 (lower is better)
Translates to: LQAQTVIAAVVP*APVKGSSSAPA
Trigger: TGCAGGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394396.5
CDS CCA 72 bp AAGGAGCTGAGGAAATCCGGCGCAGACTCTCCCAGCTaGCACCAAAGCCTTCCGCTTCGCCGAGATCCTCTC +
Preference number: 6 (lower is better)
Translates to: KELRKSGADSPS*HQSLPLRRDPL
Trigger: GAGAGGATCTCGGCGAAGCGGAAGGCTTTGGTGCCAGCTGGGAGAGTCTGCGCCGGATTTCCTCAGCTCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000394394.5
ENST00000513254.5
ENST00000514885.5
CDS CAA 72 bp AAGCCTTCCGCTTCGCCGAGATCCTCTCAGGTGCTCTaGAGGACGCGAGCGACTTCCCTAGGAGCGAACTTC +
Preference number: 6 (lower is better)
Translates to: KPSASPRSSQVL*RTRATSLGANF
Trigger: GAAGTTCGCTCCTAGGGAAGTCGCTCGCGTCCTCAAGAGCACCTGAGAGGATCTCGGCGAAGCGGAAGGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000394394.5
ENST00000513254.5
CDS GCA 72 bp AGCGCCCCGGCCGTGTTGGCCACGGAGTTCTTCAGCTaGTTGATGACCACGAAGAGCAGGAGGAAAAGTAAG +
Preference number: 6 (lower is better)
Translates to: SAPAVLATEFFS*LMTTKSRRKSK
Trigger: CTTACTTTTCCTCCTGCTCTTCGTGGTCATCAAGCAGCTGAAGAACTCCGTGGCCAACACGGCCGGGGCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000643663.2
ENST00000643802.2
CDS CAA 72 bp AAAATGGTTATCTTGCCAAGTAGAACTGCAGATCCATaGCACTTACAAGTTTGGAAATTAGTGCAACAGCCA +
Preference number: 6 (lower is better)
Translates to: KMVILPSRTADP*HLQVWKLVQQP
Trigger: TGGCTGTTGCACTAATTTCCAAACTTGTAAGTGCAATGGATCTGCAGTTCTACTTGGCAAGATAACCATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000461198.5
ENST00000505198.5
ENST00000513254.5