RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMIM42 (Homo sapiens)

Ensembl gene IDs: ENSG00000288460

Ensembl transcript IDs: ENST00000672824.1

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCTGGCTCCCCTGGCTCTGGGCTCTGAGACAGCTCCAGTGGCCGTaGCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCAC +
Preference number: 1 (lower is better)
Translates to: LWLPWLWALRQLQWP*LSCTIRSSPQWSPH
Trigger: GTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGGGGAGCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR CCA 90 bp AAGCAGCTCTGGCTCCCCTGGCTCTGGGCTCTGAGACAGCTCCAGTaGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGT +
Preference number: 1 (lower is better)
Translates to: KQLWLPWLWALRQLQ*PCLSCTIRSSPQWS
Trigger: ACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGGGGAGCCAGAGCTGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR CCA 90 bp GAGTGCATTATAAGAGGGATGGTGGCAGAGGAAGGAAATGAGGCCTaGGGGGACATCTGGCAATGGAGGAACAGGGTGGCTAAAGCAGCT +
Preference number: 1 (lower is better)
Translates to: ECIIRGMVAEEGNEA*GDIWQWRNRVAKAA
Trigger: AGCTGCTTTAGCCACCCTGTTCCTCCATTGCCAGATGTCCCCCCAGGCCTCATTTCCTTCCTCTGCCACCATCCCTCTTATAATGCACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR GCA 90 bp ATTCAAACTCAGAAGCTGGGACAAGCCAAAGAACCGCAGGAGGAGTaGATTATAAGAGGGATGGTGGCAGAGGAAGGAAATGAGGCCTGG +
Preference number: 1 (lower is better)
Translates to: IQTQKLGQAKEPQEE*IIRGMVAEEGNEAW
Trigger: CCAGGCCTCATTTCCTTCCTCTGCCACCATCCCTCTTATAATGCACTCCTCCTGCGGTTCTTTGGCTTGTCCCAGCTTCTGAGTTTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR CAA 90 bp CCCCTGGCTCTGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTaGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCAAGAGAT +
Preference number: 2 (lower is better)
Translates to: PLALGSETAPVAVPL*YNQVFTSVESPPRD
Trigger: ATCTCTTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR-3UTR CCA 90 bp AAGACATTCAAACTCAGAAGCTGGGACAAGCCAAAGAACCGCAGGAGGAGTGCATGGCTCCCCTGGCTCTaGGCTCTGAGACAGCTCCAG +
Preference number: 2 (lower is better)
Translates to: KTFKLRSWDKPKNRRRSAWLPWL*ALRQLQ
Trigger: CTGGAGCTGTCTCAGAGCCCAGAGCCAGGGGAGCCA...TGCACTCCTCCTGCGGTTCTTTGGCTTGTCCCAGCTTCTGAGTTTGAATGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR-3UTR CCA 90 bp AAAAGACATTCAAACTCAGAAGCTGGGACAAGCCAAAGAACCGCAGGAGGAGTGTGGCTAAAGCAGCTCTaGCTCCCCTGGCTCTGGGCT +
Preference number: 2 (lower is better)
Translates to: KRHSNSEAGTSQRTAGGVWLKQL*LPWLWA
Trigger: AGCCCAGAGCCAGGGGAGCCAGAGCTGCTTTAGCCA...CACTCCTCCTGCGGTTCTTTGGCTTGTCCCAGCTTCTGAGTTTGAATGTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR-3UTR TCA 90 bp TGTTTCTTTCCTCTGTTAGTGCAGAAATCAAGAGCCATTTACTATTTCAGTCTTCCTGGCTCTGGGCTCTaGGACAGCTCCAGTGGCCGT +
Preference number: 2 (lower is better)
Translates to: CFFPLLVQKSRAIYYFSLPGSGL*DSSSGR
Trigger: ACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGG...AAGACTGAAATAGTAAATGGCTCTTGATTTCTGCACTAACAGAGGAAAGAAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR-3UTR CCA 90 bp GGAGGAAAGAGTGTACCTACAATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGAGGTCTTCACCTCAGTaGAGTCCCCACCAAGAGATC +
Preference number: 2 (lower is better)
Translates to: GGKSVPTIQQRVSHFILRRSSPQ*SPHQEI
Trigger: GATCTCTTGGTGGGGACTCCACTGAGGTGAAGACCT...CCTTAAAATGAAATGGCTCACTCTCTGCTGAATTGTAGGTACACTCTTTCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR-3UTR GCA 90 bp AATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGATCTTCTGGAAATGAGCTTCCAGCTCCAGTGGCCGTaGCTCTCTTGTACAATCAGG +
Preference number: 2 (lower is better)
Translates to: NSAESEPFHFKDLLEMSFQLQWP*LSCTIR
Trigger: CCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTG...GAAGCTCATTTCCAGAAGATCCTTAAAATGAAATGGCTCACTCTCTGCTGAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR-3UTR TCA 90 bp GGAGGAAAGAGTGTACCTACAATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGCTTCATTATATAACTTaGGATGCTGTGAGCTCCCAA +
Preference number: 2 (lower is better)
Translates to: GGKSVPTIQQRVSHFILRLHYIT*DAVSSQ
Trigger: TTGGGAGCTCACAGCATCTCAAGTTATATAATGAAG...CCTTAAAATGAAATGGCTCACTCTCTGCTGAATTGTAGGTACACTCTTTCCTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR GCA 72 bp CCCTGGCTCTGGGCTCTGAGACAGCTCCAGTGGCCGTaGCTCTCTTGTACAATCAGGTCTTCACCTCAGTGG +
Preference number: 3 (lower is better)
Translates to: PWLWALRQLQWP*LSCTIRSSPQW
Trigger: CCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR CCA 72 bp TGGCTCCCCTGGCTCTGGGCTCTGAGACAGCTCCAGTaGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCT +
Preference number: 3 (lower is better)
Translates to: WLPWLWALRQLQ*PCLSCTIRSSP
Trigger: AGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGGGGAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR-3UTR CAA 90 bp AAAAGACATTCAAACTCAGAAGCTGGGACAAGCCAAAGAACCGCAGGAGGAGTGGTGGCCGTGCCTCTCTaGTACAATCAGGTCTTCACC +
Preference number: 3 (lower is better)
Translates to: KRHSNSEAGTSQRTAGGVVAVPL*YNQVFT
Trigger: GGTGAAGACCTGATTGTACAAGAGAGGCACGGCCAC...CACTCCTCCTGCGGTTCTTTGGCTTGTCCCAGCTTCTGAGTTTGAATGTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR GCA 72 bp CAGAAGCTGGGACAAGCCAAAGAACCGCAGGAGGAGTaGATTATAAGAGGGATGGTGGCAGAGGAAGGAAAT +
Preference number: 3 (lower is better)
Translates to: QKLGQAKEPQEE*IIRGMVAEEGN
Trigger: ATTTCCTTCCTCTGCCACCATCCCTCTTATAATGCACTCCTCCTGCGGTTCTTTGGCTTGTCCCAGCTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR TCA 72 bp AGAGTGAGCCATTTCATTTTAAGGATCTTCTGGAAATaGGCTTCCAGAATAGCTTCATTATATAACTTGAGA +
Preference number: 3 (lower is better)
Translates to: RVSHFILRIFWK*ASRIASLYNLR
Trigger: TCTCAAGTTATATAATGAAGCTATTCTGGAAGCTCATTTCCAGAAGATCCTTAAAATGAAATGGCTCACTCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp TGGCTCTGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGTGGCTCCCCTGGCTCTaGGCTCTGAGACAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: WLWALRQLQWPCLSCTIRWLPWL*ALRQLQ
Trigger: CTGGAGCTGTCTCAGAGCCCAGAGCCAGGGGAGCCA...CCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp CTCTGGCTCCCCTGGCTCTGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTGAACCGCAGGAGGAGTaGATTATAAGAGGGATGGTG +
Preference number: 4 (lower is better)
Translates to: LWLPWLWALRQLQWPCLSEPQEE*IIRGMV
Trigger: CACCATCCCTCTTATAATGCACTCCTCCTGCGGTTC...AGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGGGGAGCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp TGGCTCTGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGGCTGAGATAGGTACGTaGTGCAAGCCGACTGCCCAC +
Preference number: 4 (lower is better)
Translates to: WLWALRQLQWPCLSCTIRAEIGT*CKPTAH
Trigger: GTGGGCAGTCGGCTTGCACCACGTACCTATCTCAGC...CCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp CTCTGGCTCCCCTGGCTCTGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTCACCACCAAGAGAATTaGGCTTGCTCTTGTTGTATC +
Preference number: 4 (lower is better)
Translates to: LWLPWLWALRQLQWPCLSHHQEN*ACSCCI
Trigger: GATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTG...AGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGGGGAGCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
3UTR CAA 72 bp CTGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTaGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCA +
Preference number: 4 (lower is better)
Translates to: LGSETAPVAVPL*YNQVFTSVESP
Trigger: TGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp TGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGTCTTCAGAGATAGGTACGTGGTaGAAGCCGACTGCCCACACC +
Preference number: 4 (lower is better)
Translates to: WALRQLQWPCLSCTIRSSEIGTW*KPTAHT
Trigger: GGTGTGGGCAGTCGGCTTGCACCACGTACCTATCTC...TGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp TGGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCAACTGAGACAGCTCCAGTaGCCGTGCCTCTCTTGTACA +
Preference number: 4 (lower is better)
Translates to: WPCLSCTIRSSPQWSPHQLRQLQ*PCLSCT
Trigger: TGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAG...TTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp TCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCAAGAGATCCAGATCTGGCTAAAGCAGCTCTaGCTCCCCTGGCTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: SCTIRSSPQWSPHQEIQIWLKQL*LPWLWA
Trigger: AGCCCAGAGCCAGGGGAGCCAGAGCTGCTTTAGCCA...GATCTGGATCTCTTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR TCA 90 bp GTGGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCAGCTTCCAAAAAGAGCTaGGATAGGTACGTGGTGCAA +
Preference number: 4 (lower is better)
Translates to: VAVPLLYNQVFTSVESPPASKKS*DRYVVQ
Trigger: TTGCACCACGTACCTATCTCAGCTCTTTTTGGAAGC...TGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp GTGGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCATTCAAACTCAGAAGCTaGGACAAGCCAAAGAACCGC +
Preference number: 4 (lower is better)
Translates to: VAVPLLYNQVFTSVESPPFKLRS*DKPKNR
Trigger: GCGGTTCTTTGGCTTGTCCCAGCTTCTGAGTTTGAA...TGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR TCA 90 bp GCTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCACTCCCAGCATTAAGTaGAGAGGAGGAAAGAGTGTA +
Preference number: 4 (lower is better)
Translates to: APVAVPLLYNQVFTSVESTPSIK*RGGKSV
Trigger: TACACTCTTTCCTCCTCTTCACTTAATGCTGGGAGT...GGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp TGGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCAATTATGGCAGCCATGTTaGCTCCTTTCTTGGGTGTGT +
Preference number: 4 (lower is better)
Translates to: WPCLSCTIRSSPQWSPHQLWQPC*LLSWVC
Trigger: ACACACCCAAGAAAGGAGGCAACATGGCTGCCATAA...TTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR TCA 90 bp GGAAAGAGTGTACCTACAATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGATCCCTGGCTCTGGGCTCTaGGACAGCTCCAGTGGCCGT +
Preference number: 4 (lower is better)
Translates to: GKSVPTIQQRVSHFILRIPGSGL*DSSSGR
Trigger: ACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCAGG...GATCCTTAAAATGAAATGGCTCACTCTCTGCTGAATTGTAGGTACACTCTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp AAAAGACATTCAAACTCAGAAGCTGGGACAAGCCAAAGAACCGCAGGAGGAGTGCAGCTCCAGTGGCCGTaGCTCTCTTGTACAATCAGG +
Preference number: 4 (lower is better)
Translates to: KRHSNSEAGTSQRTAGGVQLQWP*LSCTIR
Trigger: CCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTG...CACTCCTCCTGCGGTTCTTTGGCTTGTCCCAGCTTCTGAGTTTGAATGTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp GCTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCATTCCATTCTTCACATaGGGCTATTCTCCTTTGGAT +
Preference number: 4 (lower is better)
Translates to: APVAVPLLYNQVFTSVESIPFFT*GYSPLD
Trigger: ATCCAAAGGAGAATAGCCCCATGTGAAGAATGGAAT...GGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp TCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCAAGAGATCCAGATCGAAAGCTGGAAGTTGTaGGGAGGACATAAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: SCTIRSSPQWSPHQEIQIESWKL*GGHKLP
Trigger: TGGAAGCTTATGTCCTCCCCACAACTTCCAGCTTTC...GATCTGGATCTCTTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR TCA 90 bp AAGACATTCAAACTCAGAAGCTGGGACAAGCCAAAGAACCGCAGGAGGAGTGCAAGGATCTTCTGGAAATaGGCTTCCAGAATAGCTTCA +
Preference number: 4 (lower is better)
Translates to: KTFKLRSWDKPKNRRRSARIFWK*ASRIAS
Trigger: TGAAGCTATTCTGGAAGCTCATTTCCAGAAGATCCT...TGCACTCCTCCTGCGGTTCTTTGGCTTGTCCCAGCTTCTGAGTTTGAATGTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp GGAAAGAGTGTACCTACAATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGATCGTGGTGCAAGCCGACTaGCCACACCACCAAGAGAAT +
Preference number: 4 (lower is better)
Translates to: GKSVPTIQQRVSHFILRIVVQAD*PHHQEN
Trigger: ATTCTCTTGGTGGTGTGGGCAGTCGGCTTGCACCAC...GATCCTTAAAATGAAATGGCTCACTCTCTGCTGAATTGTAGGTACACTCTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR TCA 90 bp AGGAGGAAAGAGTGTACCTACAATTCAGCAGAGAGTGAGCCATTTCATTTTAAGCGACCAAACATCTACTaGTTCCATTCTTCACATGGG +
Preference number: 4 (lower is better)
Translates to: RRKECTYNSAESEPFHFKRPNIY*FHSSHG
Trigger: CCCATGTGAAGAATGGAATCAGTAGATGTTTGGTCG...CTTAAAATGAAATGGCTCACTCTCTGCTGAATTGTAGGTACACTCTTTCCTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CCA 90 bp TGTTTCTTTCCTCTGTTAGTGCAGAAATCAAGAGCCATTTACTATTTCAGTCTTAATGGAGGAACAGGGTaGCTAAAGCAGCTCTGGCTC +
Preference number: 4 (lower is better)
Translates to: CFFPLLVQKSRAIYYFSLNGGTG*LKQLWL
Trigger: GAGCCAGAGCTGCTTTAGCCACCCTGTTCCTCCATT...AAGACTGAAATAGTAAATGGCTCTTGATTTCTGCACTAACAGAGGAAAGAAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp GGAAAGAGTGTACCTACAATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGATCGCAAGGCCAAACAACTaGTTCCAATACAAACACAGA +
Preference number: 4 (lower is better)
Translates to: GKSVPTIQQRVSHFILRIARPNN*FQYKHR
Trigger: TCTGTGTTTGTATTGGAAGCAGTTGTTTGGCCTTGC...GATCCTTAAAATGAAATGGCTCACTCTCTGCTGAATTGTAGGTACACTCTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp GGAAAGAGTGTACCTACAATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGATCCCCACAGTCAGCACATaGCCAATTTATAGAGGAAAA +
Preference number: 4 (lower is better)
Translates to: GKSVPTIQQRVSHFILRIPTVST*PIYRGK
Trigger: TTTTCCTCTATAAATTGGGCATGTGCTGACTGTGGG...GATCCTTAAAATGAAATGGCTCACTCTCTGCTGAATTGTAGGTACACTCTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp TGTTTCTTTCCTCTGTTAGTGCAGAAATCAAGAGCCATTTACTATTTCAGTCTTGAAGGCATAGACGTTTaGTCAGCAAGGCCAAACAAC +
Preference number: 4 (lower is better)
Translates to: CFFPLLVQKSRAIYYFSLEGIDV*SARPNN
Trigger: GTTGTTTGGCCTTGCTGAGCAAACGTCTATGCCTTC...AAGACTGAAATAGTAAATGGCTCTTGATTTCTGCACTAACAGAGGAAAGAAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR TCA 90 bp AATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGATCTTCTGGAAATGAGCTTCCTTCATTATATAACTTaGGATGCTGTGAGCTCCCAA +
Preference number: 4 (lower is better)
Translates to: NSAESEPFHFKDLLEMSFLHYIT*DAVSSQ
Trigger: TTGGGAGCTCACAGCATCTCAAGTTATATAATGAAG...GAAGCTCATTTCCAGAAGATCCTTAAAATGAAATGGCTCACTCTCTGCTGAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp ACTTGTTTCTTTCCTCTGTTAGTGCAGAAATCAAGAGCCATTTACTATTTCAGTCAAGAGAATTGGGCTTaGTCTTGTTGTATCCTAGGA +
Preference number: 4 (lower is better)
Translates to: TCFFPLLVQKSRAIYYFSQENWA*SCCILG
Trigger: TCCTAGGATACAACAAGAGCAAGCCCAATTCTCTTG...ACTGAAATAGTAAATGGCTCTTGATTTCTGCACTAACAGAGGAAAGAAACAAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR GCA 90 bp ACTTGTTTCTTTCCTCTGTTAGTGCAGAAATCAAGAGCCATTTACTATTTCAGTTCTCTCTGTTCTTGTTaGTTTTGTCTTTGGTTACTT +
Preference number: 4 (lower is better)
Translates to: TCFFPLLVQKSRAIYYFSSLCSC*FCLWLL
Trigger: AAGTAACCAAAGACAAAAGCAACAAGAACAGAGAGA...ACTGAAATAGTAAATGGCTCTTGATTTCTGCACTAACAGAGGAAAGAAACAAGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CCA 90 bp CTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTaGAGTCCCCACCAAGAGATCCAGATCTTTATGGCAGCCATGTTG +
Preference number: 5 (lower is better)
Translates to: LQWPCLSCTIRSSPQ*SPHQEIQIFMAAML
Trigger: CAACATGGCTGCCATAAAGATCTGGATCTCTTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp TGGCTCTGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGTTGGGCTTGCTCTTGTaGTATCCTAGGAGTGGATAT +
Preference number: 5 (lower is better)
Translates to: WLWALRQLQWPCLSCTIRLGLLL*YPRSGY
Trigger: ATATCCACTCCTAGGATACAACAAGAGCAAGCCCAA...CCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCAGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp AGCTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCTTTATGGCAGCCATGTaGCCTCCTTTCTTGGGTGTG +
Preference number: 5 (lower is better)
Translates to: SSSGRASLVQSGLHLSGVFMAAM*PPFLGV
Trigger: CACACCCAAGAAAGGAGGCAACATGGCTGCCATAAA...GACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS GCA 90 bp TACGTGGTGCAAGCCGACTGCCCACACCACCAAGAGAATTGGGCTTaGTCTTGTTGTATCCTAGGAGTGGATATGGTACAGCGACCAAAC +
Preference number: 5 (lower is better)
Translates to: YVVQADCPHHQENWA*SCCILGVDMVQRPN
Trigger: GTTTGGTCGCTGTACCATATCCACTCCTAGGATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTGTGGGCAGTCGGCTTGCACCACGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CCA 90 bp GATAGGTACGTGGTGCAAGCCGACTGCCCACACCACCAAGAGAATTaGGCTTGCTCTTGTTGTATCCTAGGAGTGGATATGGTACAGCGA +
Preference number: 5 (lower is better)
Translates to: DRYVVQADCPHHQEN*ACSCCILGVDMVQR
Trigger: TCGCTGTACCATATCCACTCCTAGGATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTGTGGGCAGTCGGCTTGCACCACGTACCTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CCA 90 bp TTGTGGGGAGGACATAAGCTTCCAAAAAGAGCTGAGATAGGTACGTaGTGCAAGCCGACTGCCCACACCACCAAGAGAATTGGGCTTGCT +
Preference number: 5 (lower is better)
Translates to: LWGGHKLPKRAEIGT*CKPTAHTTKRIGLA
Trigger: AGCAAGCCCAATTCTCTTGGTGGTGTGGGCAGTCGGCTTGCACCACGTACCTATCTCAGCTCTTTTTGGAAGCTTATGTCCTCCCCACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp TGGGCTCTGAGACAGCTCCAGTGGCCGTGCCTCTCTTGTACAATCAGGTCTTCAGAATTGGGCTTGCTCTaGTTGTATCCTAGGAGTGGA +
Preference number: 5 (lower is better)
Translates to: WALRQLQWPCLSCTIRSSELGLL*LYPRSG
Trigger: TCCACTCCTAGGATACAACAAGAGCAAGCCCAATTC...TGAAGACCTGATTGTACAAGAGAGGCACGGCCACTGGAGCTGTCTCAGAGCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CCA 90 bp GGTCTTCACCTCAGTGGAGTCCCCACCAAGAGATCCAGATCTTTATaGCAGCCATGTTGCCTCCTTTCTTGGGTGTGTCTCTCTGTTCTT +
Preference number: 5 (lower is better)
Translates to: GLHLSGVPTKRSRSL*QPCCLLSWVCLSVL
Trigger: AAGAACAGAGAGACACACCCAAGAAAGGAGGCAACATGGCTGCCATAAAGATCTGGATCTCTTGGTGGGGACTCCACTGAGGTGAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS GCA 90 bp AGTGGAGTCCCCACCAAGAGATCCAGATCTTTATGGCAGCCATGTTaGCTCCTTTCTTGGGTGTGTCTCTCTGTTCTTGTTGCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: SGVPTKRSRSLWQPC*LLSWVCLSVLVAFV
Trigger: GACAAAAGCAACAAGAACAGAGAGACACACCCAAGAAAGGAGGCAACATGGCTGCCATAAAGATCTGGATCTCTTGGTGGGGACTCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp TCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCAAGAGATCCAGATCTGGGGCTATTCTCCTTaGGATGTAATGGAGAAGGCA +
Preference number: 5 (lower is better)
Translates to: SCTIRSSPQWSPHQEIQIWGYSP*DVMEKA
Trigger: TGCCTTCTCCATTACATCCAAAGGAGAATAGCCCCA...GATCTGGATCTCTTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp TCTTGTACAATCAGGTCTTCACCTCAGTGGAGTCCCCACCAAGAGATCCAGATCGCTTCATTATATAACTaGAGATGCTGTGAGCTCCCA +
Preference number: 5 (lower is better)
Translates to: SCTIRSSPQWSPHQEIQIASLYN*RCCELP
Trigger: TGGGAGCTCACAGCATCTCAAGTTATATAATGAAGC...GATCTGGATCTCTTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp GGAGGAAAGAGTGTACCTACAATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGAGAAGGCATAGACGTTaGCTCAGCAAGGCCAAACAA +
Preference number: 5 (lower is better)
Translates to: GGKSVPTIQQRVSHFILRRRHRR*LSKAKQ
Trigger: TTGTTTGGCCTTGCTGAGCAAACGTCTATGCCTTCT...CCTTAAAATGAAATGGCTCACTCTCTGCTGAATTGTAGGTACACTCTTTCCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp TGTTTCTTTCCTCTGTTAGTGCAGAAATCAAGAGCCATTTACTATTTCAGTCTTGTGGCCGTGCCTCTCTaGTACAATCAGGTCTTCACC +
Preference number: 5 (lower is better)
Translates to: CFFPLLVQKSRAIYYFSLVAVPL*YNQVFT
Trigger: GGTGAAGACCTGATTGTACAAGAGAGGCACGGCCAC...AAGACTGAAATAGTAAATGGCTCTTGATTTCTGCACTAACAGAGGAAAGAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp AATTCAGCAGAGAGTGAGCCATTTCATTTTAAGGATCTTCTGGAAATGAGCTTCACACCACCAAGAGAATaGGGCTTGCTCTTGTTGTAT +
Preference number: 5 (lower is better)
Translates to: NSAESEPFHFKDLLEMSFTPPRE*GLLLLY
Trigger: ATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTGT...GAAGCTCATTTCCAGAAGATCCTTAAAATGAAATGGCTCACTCTCTGCTGAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS-3UTR CAA 90 bp ACTTGTTTCTTTCCTCTGTTAGTGCAGAAATCAAGAGCCATTTACTATTTCAGTCCAAGAGAATTGGGCTaGCTCTTGTTGTATCCTAGG +
Preference number: 5 (lower is better)
Translates to: TCFFPLLVQKSRAIYYFSPRELG*LLLYPR
Trigger: CCTAGGATACAACAAGAGCAAGCCCAATTCTCTTGG...ACTGAAATAGTAAATGGCTCTTGATTTCTGCACTAACAGAGGAAAGAAACAAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CCA 72 bp GTGGTGCAAGCCGACTGCCCACACCACCAAGAGAATTaGGCTTGCTCTTGTTGTATCCTAGGAGTGGATATG +
Preference number: 6 (lower is better)
Translates to: VVQADCPHHQEN*ACSCCILGVDM
Trigger: CATATCCACTCCTAGGATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTGTGGGCAGTCGGCTTGCACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CAA 72 bp CGTGGTGCAAGCCGACTGCCCACACCACCAAGAGAATaGGGCTTGCTCTTGTTGTATCCTAGGAGTGGATAT +
Preference number: 6 (lower is better)
Translates to: RGASRLPTPPRE*GLLLLYPRSGY
Trigger: ATATCCACTCCTAGGATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTGTGGGCAGTCGGCTTGCACCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CAA 90 bp GTACGTGGTGCAAGCCGACTGCCCACACCACCAAGAGAATTGGGCTaGCTCTTGTTGTATCCTAGGAGTGGATATGGTACAGCGACCAAA +
Preference number: 6 (lower is better)
Translates to: VRGASRLPTPPRELG*LLLYPRSGYGTATK
Trigger: TTTGGTCGCTGTACCATATCCACTCCTAGGATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTGTGGGCAGTCGGCTTGCACCACGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CAA 90 bp GCAAGCCGACTGCCCACACCACCAAGAGAATTGGGCTTGCTCTTGTaGTATCCTAGGAGTGGATATGGTACAGCGACCAAACATCTACTG +
Preference number: 6 (lower is better)
Translates to: ASRLPTPPRELGLLL*YPRSGYGTATKHLL
Trigger: CAGTAGATGTTTGGTCGCTGTACCATATCCACTCCTAGGATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTGTGGGCAGTCGGCTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CCA 72 bp CCGTGCCTCTCTTGTACAATCAGGTCTTCACCTCAGTaGAGTCCCCACCAAGAGATCCAGATCTTTATGGCA +
Preference number: 6 (lower is better)
Translates to: PCLSCTIRSSPQ*SPHQEIQIFMA
Trigger: TGCCATAAAGATCTGGATCTCTTGGTGGGGACTCCACTGAGGTGAAGACCTGATTGTACAAGAGAGGCACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CCA 72 bp GGACATAAGCTTCCAAAAAGAGCTGAGATAGGTACGTaGTGCAAGCCGACTGCCCACACCACCAAGAGAATT +
Preference number: 6 (lower is better)
Translates to: GHKLPKRAEIGT*CKPTAHTTKRI
Trigger: AATTCTCTTGGTGGTGTGGGCAGTCGGCTTGCACCACGTACCTATCTCAGCTCTTTTTGGAAGCTTATGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CAA 72 bp CTGCCCACACCACCAAGAGAATTGGGCTTGCTCTTGTaGTATCCTAGGAGTGGATATGGTACAGCGACCAAA +
Preference number: 6 (lower is better)
Translates to: LPTPPRELGLLL*YPRSGYGTATK
Trigger: TTTGGTCGCTGTACCATATCCACTCCTAGGATACAACAAGAGCAAGCCCAATTCTCTTGGTGGTGTGGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CAA 72 bp CCCCACCAAGAGATCCAGATCTTTATGGCAGCCATGTaGCCTCCTTTCTTGGGTGTGTCTCTCTGTTCTTGT +
Preference number: 6 (lower is better)
Translates to: PHQEIQIFMAAM*PPFLGVSLCSC
Trigger: ACAAGAACAGAGAGACACACCCAAGAAAGGAGGCAACATGGCTGCCATAAAGATCTGGATCTCTTGGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CAA 90 bp CAGTGGAGTCCCCACCAAGAGATCCAGATCTTTATGGCAGCCATGTaGCCTCCTTTCTTGGGTGTGTCTCTCTGTTCTTGTTGCTTTTGT +
Preference number: 6 (lower is better)
Translates to: QWSPHQEIQIFMAAM*PPFLGVSLCSCCFC
Trigger: ACAAAAGCAACAAGAACAGAGAGACACACCCAAGAAAGGAGGCAACATGGCTGCCATAAAGATCTGGATCTCTTGGTGGGGACTCCACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS GCA 72 bp CCCACCAAGAGATCCAGATCTTTATGGCAGCCATGTTaGCTCCTTTCTTGGGTGTGTCTCTCTGTTCTTGTT +
Preference number: 6 (lower is better)
Translates to: PTKRSRSLWQPC*LLSWVCLSVLV
Trigger: AACAAGAACAGAGAGACACACCCAAGAAAGGAGGCAACATGGCTGCCATAAAGATCTGGATCTCTTGGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CAA 90 bp TTTACCAGGCAAGCAGGATTAGATATGGCAGTGGTGAGTGTACCCTaGTCCCATAAGAAAGCTGGAAGTTGTGGGGAGGACATAAGCTTC +
Preference number: 6 (lower is better)
Translates to: FTRQAGLDMAVVSVP*SHKKAGSCGEDISF
Trigger: GAAGCTTATGTCCTCCCCACAACTTCCAGCTTTCTTATGGGACAAGGGTACACTCACCACTGCCATATCTAATCCTGCTTGCCTGGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS TCA 72 bp CTAGGAGTGGATATGGTACAGCGACCAAACATCTACTaGTTCCATTCTTCACATGGGGCTATTCTCCTTTGG +
Preference number: 6 (lower is better)
Translates to: LGVDMVQRPNIY*FHSSHGAILLW
Trigger: CCAAAGGAGAATAGCCCCATGTGAAGAATGGAATCAGTAGATGTTTGGTCGCTGTACCATATCCACTCCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS CCA 72 bp ACAGCGACCAAACATCTACTGATTCCATTCTTCACATaGGGCTATTCTCCTTTGGATGTAATGGAGAAGGCA +
Preference number: 6 (lower is better)
Translates to: TATKHLLIPFFT*GYSPLDVMEKA
Trigger: TGCCTTCTCCATTACATCCAAAGGAGAATAGCCCCATGTGAAGAATGGAATCAGTAGATGTTTGGTCGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1
CDS GCA 72 bp TTCTCCTTTGGATGTAATGGAGAAGGCATAGACGTTTaGTCAGCAAGGCCAAACAACTGCTTCCAATACAAA +
Preference number: 6 (lower is better)
Translates to: FSFGCNGEGIDV*SARPNNCFQYK
Trigger: TTTGTATTGGAAGCAGTTGTTTGGCCTTGCTGAGCAAACGTCTATGCCTTCTCCATTACATCCAAAGGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000672824.1