Pregenerated sensors for SFTPA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000122852Ensembl transcript IDs: ENST00000398636.8, ENST00000419470.6, ENST00000428376.6
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGAGGGTCCTTCTACCCCAAGACCTCACTGCTGCCATCTGTAAGTaGAGGAACTGGACCAGATGGGGAATAAGGAGGGCTCCATCTCAT | + |
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Preference number: 1 (lower is better) Translates to: WRVLLPQDLTAAICK*RNWTRWGIRRAPSH Trigger: ATGAGATGGAGCCCTCCTTATTCCCCATCTGGTCCAGTTCCTTCACTTACAGATGGCAGCAGTGAGGTCTTGGGGTAGAAGGACCCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR GCA 90 bp | AAGCATAAGCTTCAGGTCCAGGAAGATGGGTTTGGATCCAGCCTCTaGCACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCC | + |
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Preference number: 1 (lower is better) Translates to: KHKLQVQEDGFGSSL*HLLSGIILKTFNSS Trigger: GGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAACCCATCTTCCTGGACCTGAAGCTTATGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACAGTGGAGCCTCAGGATaGAGGCCGAAGGCCAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: FGSSLCHLLSGIILKTFNSGASG*RPKARE Trigger: CTCTCTGGCCTTCGGCCTCCATCCTGAGGCTCCACT...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTAGTGGAGCCTCAGGATaGAGGCCGAAGGCCAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: HLLSGIILKTFNSSKLQCSGASG*RPKARE Trigger: CTCTCTGGCCTTCGGCCTCCATCCTGAGGCTCCACT...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACTGGCCACCACCCTGCTaGAACACTACCTGGCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: FGSSLCHLLSGIILKTFNWPPPC*NTTWPS Trigger: AGAAGGCCAGGTAGTGTTCCAGCAGGGTGGTGGCCA...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTTGGCCACCACCCTGCTaGAACACTACCTGGCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: HLLSGIILKTFNSSKLQCWPPPC*NTTWPS Trigger: AGAAGGCCAGGTAGTGTTCCAGCAGGGTGGTGGCCA...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACCATCAATCATGGGGTTaGCTTGGCCACCACCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: FGSSLCHLLSGIILKTFNHQSWG*LGHHPA Trigger: AGCAGGGTGGTGGCCAAGCCAACCCCATGATTGATG...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACAGGAACTGGACCAGATaGGGAATAAGGAGGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: FGSSLCHLLSGIILKTFNRNWTR*GIRRAP Trigger: TGGAGCCCTCCTTATTCCCCATCTGGTCCAGTTCCT...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTCATCAATCATGGGGTTaGCTTGGCCACCACCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: HLLSGIILKTFNSSKLQCHQSWG*LGHHPA Trigger: AGCAGGGTGGTGGCCAAGCCAACCCCATGATTGATG...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR TCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACATCTTCAACTGTCACTaGTTACCTTGCCCACCCCAC | + |
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Preference number: 2 (lower is better) Translates to: FGSSLCHLLSGIILKTFNIFNCH*LPCPPH Trigger: GTGGGGTGGGCAAGGTAATCAGTGACAGTTGAAGAT...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR TCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTATCTTCAACTGTCACTaGTTACCTTGCCCACCCCAC | + |
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Preference number: 2 (lower is better) Translates to: HLLSGIILKTFNSSKLQCIFNCH*LPCPPH Trigger: GTGGGGTGGGCAAGGTAATCAGTGACAGTTGAAGAT...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACGCTTGTCAAGGTTCTTaGCAAATGATAGGTGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: FGSSLCHLLSGIILKTFNACQGS*QMIGAQ Trigger: CTGAGCACCTATCATTTGCCAAGAACCTTGACAAGC...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTGCTTGTCAAGGTTCTTaGCAAATGATAGGTGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: HLLSGIILKTFNSSKLQCACQGS*QMIGAQ Trigger: CTGAGCACCTATCATTTGCCAAGAACCTTGACAAGC...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CAA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACACATCAATCATGGGGTaGGCTTGGCCACCACCCTGC | + |
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Preference number: 3 (lower is better) Translates to: FGSSLCHLLSGIILKTFNTSIMG*AWPPPC Trigger: GCAGGGTGGTGGCCAAGCCAACCCCATGATTGATGT...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CAA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTACATCAATCATGGGGTaGGCTTGGCCACCACCCTGC | + |
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Preference number: 3 (lower is better) Translates to: HLLSGIILKTFNSSKLQCTSIMG*AWPPPC Trigger: GCAGGGTGGTGGCCAAGCCAACCCCATGATTGATGT...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CAA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACGCACTTTGTGTGACTTaGGAGGGTCCTTCTACCCCA | + |
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Preference number: 3 (lower is better) Translates to: FGSSLCHLLSGIILKTFNALCVT*EGPSTP Trigger: TGGGGTAGAAGGACCCTCCAAAGTCACACAAAGTGC...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CAA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACCTGTCACTGATTACCTaGCCCACCCCACGACATATC | + |
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Preference number: 3 (lower is better) Translates to: FGSSLCHLLSGIILKTFNLSLIT*PTPRHI Trigger: GATATGTCGTGGGGTGGGCAAGGTAATCAGTGACAG...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR GCA 72 bp | CTTCAGGTCCAGGAAGATGGGTTTGGATCCAGCCTCTaGCACTTGCTCTCTGGAATAATACTCAAAACATTT | + |
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Preference number: 3 (lower is better) Translates to: LQVQEDGFGSSL*HLLSGIILKTF Trigger: AAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAACCCATCTTCCTGGACCTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR-3UTR CAA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTGCACTTTGTGTGACTTaGGAGGGTCCTTCTACCCCA | + |
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Preference number: 3 (lower is better) Translates to: HLLSGIILKTFNSSKLQCALCVT*EGPSTP Trigger: TGGGGTAGAAGGACCCTCCAAAGTCACACAAAGTGC...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| 3UTR CCA 72 bp | ATAATATGCTGTATTAGAAGTGCTTGTCAAGGTTCTTaGCAAATGATAGGTGCTCAGTCAATAGCCTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: IICCIRSACQGS*QMIGAQSIASV Trigger: CACAGAGGCTATTGACTGAGCACCTATCATTTGCCAAGAACCTTGACAAGCACTTCTAATACAGCATATTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR CCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACATGAGCTGGAAGCCCTaGAGGGCCCCTCTCGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FGSSLCHLLSGIILKTFNMSWKP*RAPLAR Trigger: CCTGGCGAGAGGGGCCCTCCAGGGCTTCCAGCTCAT...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTTCCAGTCGCTGCTCCTaGCACCTGGCATGGCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: HLLSGIILKTFNSSKLQCSSRCS*HLAWPH Trigger: ATGAGGCCATGCCAGGTGCCAGGAGCAGCGACTGGA...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419470.6 |
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| CDS-3UTR TCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACAGTCGCTGCTCTCACTaGCTCACACCATCTGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: FGSSLCHLLSGIILKTFNSRCSH*LTPSVL Trigger: GAGGACAGATGGTGTGAGTCAGTGAGAGCAGCGACT...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000398636.8 |
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| CDS-3UTR CCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACCAGGAGTGGGGTGGCTaGAAGCATAAGCTTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: FGSSLCHLLSGIILKTFNQEWGG*KHKLQV Trigger: GACCTGAAGCTTATGCTTCCAGCCACCCCACTCCTG...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTCAGGAGTGGGGTGGCTaGAAGCATAAGCTTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: HLLSGIILKTFNSSKLQCQEWGG*KHKLQV Trigger: GACCTGAAGCTTATGCTTCCAGCCACCCCACTCCTG...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTAGGAACTGGACCAGATaGGGAATAAGGAGGGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: HLLSGIILKTFNSSKLQCRNWTR*GIRRAP Trigger: TGGAGCCCTCCTTATTCCCCATCTGGTCCAGTTCCT...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR CCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACTATTCAGCTCAGGAGTaGGGTGGCTGGAAGCATAAG | + |
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Preference number: 4 (lower is better) Translates to: FGSSLCHLLSGIILKTFNYSAQE*GGWKHK Trigger: CTTATGCTTCCAGCCACCCCACTCCTGAGCTGAATA...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR GCA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACTTTGGATCCAGCCTCTaGCACTTGCTCTCTGGAATA | + |
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Preference number: 4 (lower is better) Translates to: FGSSLCHLLSGIILKTFNFGSSL*HLLSGI Trigger: TATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTTATTCAGCTCAGGAGTaGGGTGGCTGGAAGCATAAG | + |
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Preference number: 4 (lower is better) Translates to: HLLSGIILKTFNSSKLQCYSAQE*GGWKHK Trigger: CTTATGCTTCCAGCCACCCCACTCCTGAGCTGAATA...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR GCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTTTTGGATCCAGCCTCTaGCACTTGCTCTCTGGAATA | + |
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Preference number: 4 (lower is better) Translates to: HLLSGIILKTFNSSKLQCFGSSL*HLLSGI Trigger: TATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR GCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTATCTGTCCTCATCCCTaGTGTGTTACTTTCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: HLLSGIILKTFNSSKLQCICPHP*CVTFFS Trigger: TGAAAAGAAAGTAACACAGCAGGGATGAGGACAGAT...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000398636.8 |
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| CDS-3UTR CCA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTCTGCCACTTGCTCTCTaGAATAATACTCAAAACATT | + |
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Preference number: 4 (lower is better) Translates to: HLLSGIILKTFNSSKLQCLPLAL*NNTQNI Trigger: AATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAG...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR CAA 90 bp | TTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCAGGAAGATGGGTTaGGATCCAGCCTCTGCCACT | + |
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Preference number: 5 (lower is better) Translates to: FGSSLCHLLSGIILKTFNSRKMG*DPASAT Trigger: AGTGGCAGAGGCTGGATCCAAACCCATCTTCCTGGA...GTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTGGCAGAGGCTGGATCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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| CDS-3UTR CAA 90 bp | CACTTGCTCTCTGGAATAATACTCAAAACATTTAACTCCTCCAAGCTTCAGTGTCTGTCACTGATTACCTaGCCCACCCCACGACATATC | + |
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Preference number: 5 (lower is better) Translates to: HLLSGIILKTFNSSKLQCLSLIT*PTPRHI Trigger: GATATGTCGTGGGGTGGGCAAGGTAATCAGTGACAG...ACACTGAAGCTTGGAGGAGTTAAATGTTTTGAGTATTATTCCAGAGAGCAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398636.8 ENST00000419470.6 ENST00000428376.6 |
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