Pregenerated sensors for SF3B6 (Homo sapiens)

Ensembl gene IDs: ENSG00000115128

Ensembl transcript IDs: ENST00000478050.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	ATTACTACTTCAATGAATGCTTTGAGGAAACTCAAATCCTCTTCTTaGCTCTCATTGAGCTGGATCATTAGGGTCTCAGTAGGTTTTCTC	+
Preference number: 5 (lower is better) Translates to: ITTSMNALRKLKSSS*LSLSWIIRVSVGFL Trigger: GAGAAAACCTACTGAGACCCTAATGATCCAGCTCAATGAGAGCCAAGAAGAGGATTTGAGTTTCCTCAAAGCATTCATTGAAGTAGTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478050.1
CDS GCA 72 bp	GAGCTCGCTCGGCTTCGGGGGTTACACCGCGTTAGATaGAGGACATCAACATCCAGGACCCGCCGGAAGCTG	+
Preference number: 6 (lower is better) Translates to: ELARLRGLHRVR*RTSTSRTRRKL Trigger: CAGCTTCCGGCGGGTCCTGGATGTTGATGTCCTGCATCTAACGCGGTGTAACCCCCGAAGCCGAGCGAGCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000478050.1
CDS CAA 72 bp	CATCTCTCTGATCTCAATCTGCTAGTCTCAAGGCTCTaGGTAAGGGTTGTCGCACTGCACACAGCACAGGGT	+
Preference number: 6 (lower is better) Translates to: HLSDLNLLVSRL*VRVVALHTAQG Trigger: ACCCTGTGCTGTGTGCAGTGCGACAACCCTTACCAAGAGCCTTGAGACTAGCAGATTGAGATCAGAGAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000478050.1
CDS CAA 90 bp	AAAAGATCTCATCTCTCTGATCTCAATCTGCTAGTCTCAAGGCTCTaGGTAAGGGTTGTCGCACTGCACACAGCACAGGGTGGCCTCATC	+
Preference number: 6 (lower is better) Translates to: KRSHLSDLNLLVSRL*VRVVALHTAQGGLI Trigger: GATGAGGCCACCCTGTGCTGTGTGCAGTGCGACAACCCTTACCAAGAGCCTTGAGACTAGCAGATTGAGATCAGAGAGATGAGATCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478050.1
CDS CAA 72 bp	GCTTTGAGGAAACTCAAATCCTCTTCTTGGCTCTCATaGAGCTGGATCATTAGGGTCTCAGTAGGTTTTCTC	+
Preference number: 6 (lower is better) Translates to: ALRKLKSSSWLS*SWIIRVSVGFL Trigger: GAGAAAACCTACTGAGACCCTAATGATCCAGCTCAATGAGAGCCAAGAAGAGGATTTGAGTTTCCTCAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478050.1
CDS CCA 72 bp	TCAATGAATGCTTTGAGGAAACTCAAATCCTCTTCTTaGCTCTCATTGAGCTGGATCATTAGGGTCTCAGTA	+
Preference number: 6 (lower is better) Translates to: SMNALRKLKSSS*LSLSWIIRVSV Trigger: TACTGAGACCCTAATGATCCAGCTCAATGAGAGCCAAGAAGAGGATTTGAGTTTCCTCAAAGCATTCATTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000478050.1

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