Pregenerated sensors for SF3A3 (Homo sapiens)

Ensembl gene IDs: ENSG00000183431

Ensembl transcript IDs: ENST00000460925.1, ENST00000461869.5, ENST00000487062.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CGCGGCTTCTCAATTCAGACCACCAACACGGCCGGAAGCAACTCCTaGCGCCCAGCGCGCCTGAGTCCCCACGTTGCGCATCAGGCTGCA	+
Preference number: 5 (lower is better) Translates to: RGFSIQTTNTAGSNS*RPARLSPHVAHQAA Trigger: TGCAGCCTGATGCGCAACGTGGGGACTCAGGCGCGCTGGGCGGCAGGAGTTGCTTCCGGCCGTGTTGGTGGTCTGAATTGAGAAGCCGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000461869.5
CDS CCA 90 bp	GGGAAACCCCAAATGCAGGCCAGAGGGTGGGTGTTCCTGAGGCTGTaGCAGGACCACACATTTCACAGCCAATCTAGCAGTAAGTCTAAA	+
Preference number: 5 (lower is better) Translates to: GKPQMQARGWVFLRL*QDHTFHSQSSSKSK Trigger: TTTAGACTTACTGCTAGATTGGCTGTGAAATGTGTGGTCCTGCCACAGCCTCAGGAACACCCACCCTCTGGCCTGCATTTGGGGTTTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460925.1
CDS TCA 90 bp	AGATTTTTGGGAAACCCCAAATGCAGGCCAGAGGGTGGGTGTTCCTaGGGCTGTGGCAGGACCACACATTTCACAGCCAATCTAGCAGTA	+
Preference number: 5 (lower is better) Translates to: RFLGNPKCRPEGGCS*GCGRTTHFTANLAV Trigger: TACTGCTAGATTGGCTGTGAAATGTGTGGTCCTGCCACAGCCTCAGGAACACCCACCCTCTGGCCTGCATTTGGGGTTTCCCAAAAATCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000460925.1
CDS GCA 90 bp	CTGTTGGGTATCCAGTGTTATAATCCTCTCTCCCTGCCATTAGGATaGTCCCTAGAAGACTCTGCCTTTGAGATTCTTGCCTACCCCAAA	+
Preference number: 5 (lower is better) Translates to: LLGIQCYNPLSLPLG*SLEDSAFEILAYPK Trigger: TTTGGGGTAGGCAAGAATCTCAAAGGCAGAGTCTTCTAGGGAGCATCCTAATGGCAGGGAGAGAGGATTATAACACTGGATACCCAACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487062.1
CDS GCA 72 bp	TCAATTCAGACCACCAACACGGCCGGAAGCAACTCCTaGCGCCCAGCGCGCCTGAGTCCCCACGTTGCGCAT	+
Preference number: 6 (lower is better) Translates to: SIQTTNTAGSNS*RPARLSPHVAH Trigger: ATGCGCAACGTGGGGACTCAGGCGCGCTGGGCGGCAGGAGTTGCTTCCGGCCGTGTTGGTGGTCTGAATTGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000461869.5
CDS TCA 72 bp	GGAAACCCCAAATGCAGGCCAGAGGGTGGGTGTTCCTaGGGCTGTGGCAGGACCACACATTTCACAGCCAAT	+
Preference number: 6 (lower is better) Translates to: GNPKCRPEGGCS*GCGRTTHFTAN Trigger: ATTGGCTGTGAAATGTGTGGTCCTGCCACAGCCTCAGGAACACCCACCCTCTGGCCTGCATTTGGGGTTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460925.1
CDS CCA 72 bp	CAAATGCAGGCCAGAGGGTGGGTGTTCCTGAGGCTGTaGCAGGACCACACATTTCACAGCCAATCTAGCAGT	+
Preference number: 6 (lower is better) Translates to: QMQARGWVFLRL*QDHTFHSQSSS Trigger: ACTGCTAGATTGGCTGTGAAATGTGTGGTCCTGCCACAGCCTCAGGAACACCCACCCTCTGGCCTGCATTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460925.1
CDS GCA 72 bp	ATCCAGTGTTATAATCCTCTCTCCCTGCCATTAGGATaGTCCCTAGAAGACTCTGCCTTTGAGATTCTTGCC	+
Preference number: 6 (lower is better) Translates to: IQCYNPLSLPLG*SLEDSAFEILA Trigger: GGCAAGAATCTCAAAGGCAGAGTCTTCTAGGGAGCATCCTAATGGCAGGGAGAGAGGATTATAACACTGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000487062.1
CDS CAA 90 bp	ATCAAATATAACCAAAGACCTCCGAAAACAGAGAAACTGATACTCTaGAAGGAGGTTAATGTGGAACAACCTATGAGAATAATGGGGAAA	+
Preference number: 6 (lower is better) Translates to: IKYNQRPPKTEKLIL*KEVNVEQPMRIMGK Trigger: TTTCCCCATTATTCTCATAGGTTGTTCCACATTAACCTCCTTCAAGAGTATCAGTTTCTCTGTTTTCGGAGGTCTTTGGTTATATTTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000487062.1

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