RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SATB1 (Homo sapiens)

Ensembl gene IDs: ENSG00000182568

Ensembl transcript IDs: ENST00000338745.11, ENST00000414509.5, ENST00000415069.5, ENST00000417717.6, ENST00000440737.5, ENST00000444341.1, ENST00000452260.6, ENST00000454909.6, ENST00000457005.5, ENST00000467628.1, ENST00000475083.5, ENST00000476178.1, ENST00000482788.1, ENST00000487699.1, ENST00000491519.4, ENST00000493952.2, ENST00000606296.1

Found 547 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AACACTAAAGCAGCCCAGTTGCCTACCAATAAGCTCATCAGGGCCTaGGAAGATGGTAGGCAGAAAGAGAAGGGGCAATTGCAAAATGGT +
Preference number: 1 (lower is better)
Translates to: NTKAAQLPTNKLIRA*EDGRQKEKGQLQNG
Trigger: ACCATTTTGCAATTGCCCCTTCTCTTTCTGCCTACCATCTTCTCAGGCCCTGATGAGCTTATTGGTAGGCAACTGGGCTGCTTTAGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR TCA 90 bp ACCATAGCCACAGGTAACAAGAGGAGGATTGGCATGAGCGATAAATaGCATTGGGGGAGCAATATGGAAGATCATCTGGGCAAGTCTTTT +
Preference number: 1 (lower is better)
Translates to: TIATGNKRRIGMSDK*HWGSNMEDHLGKSF
Trigger: AAAAGACTTGCCCAGATGATCTTCCATATTGCTCCCCCAATGTCATTTATCGCTCATGCCAATCCTCCTCTTGTTACCTGTGGCTATGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACACAACAAAGGTTTTCTaGGAGAAGACAAGGTGGACT +
Preference number: 2 (lower is better)
Translates to: KTLVSCLRGTHFGASREHTTKVF*EKTRWT
Trigger: AGTCCACCTTGTCTTCTCTCAGAAAACCTTTGTTGT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTACCAGTGGCACTGTTaGACGAAACAAATACTTTTA +
Preference number: 2 (lower is better)
Translates to: KTLVSCLRGTHFGASREHYQWHC*TKQILL
Trigger: TAAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTACAACAAAGGTTTTCTaGGAGAAGACAAGGTGGACT +
Preference number: 2 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSTTKVF*EKTRWT
Trigger: AGTCCACCTTGTCTTCTCTCAGAAAACCTTTGTTGT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR-3UTR TCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAAAAGCTCATCAGGGCCTaGGAAGATGGTAGGCAGAAA +
Preference number: 2 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEKLIRA*EDGRQK
Trigger: TTTCTGCCTACCATCTTCTCAGGCCCTGATGAGCTT...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR CAA 90 bp TTTGTTACCAAGCGCCACACAACTAGGACATACATATTAGTTACCTaGGTTTTCAAAGGTTGTCAACTCTGCATATTGTGTGGCAAGGAG +
Preference number: 2 (lower is better)
Translates to: FVTKRHTTRTYILVT*VFKGCQLCILCGKE
Trigger: CTCCTTGCCACACAATATGCAGAGTTGACAACCTTTGAAAACCAAGGTAACTAATATGTATGTCCTAGTTGTGTGGCGCTTGGTAACAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGGGGCAATTGCAAAATaGTATCTCAAGCAACCCAGA +
Preference number: 2 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCGAIAK*YLKQPR
Trigger: TCTGGGTTGCTTGAGATACCATTTTGCAATTGCCCC...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR TCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGGTTTGTGCAAGTTTTTaGAGATTCATTGGCCAAACA +
Preference number: 2 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEVCASF*RFIGQT
Trigger: TGTTTGGCCAATGAATCTTCAAAAACTTGCACAAAC...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR TCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCATGTCGGAGAGTCTTTTaGCCATCCTATCTCTACTTA +
Preference number: 2 (lower is better)
Translates to: KVATFQYNFKFATNQLPSCRRVF*PSYLYL
Trigger: TAAGTAGAGATAGGATGGTCAAAAGACTCTCCGACA...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR TCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAACTTTGGTGCATCCCGTaGACACAAATTTTAATACCA +
Preference number: 2 (lower is better)
Translates to: SIIWPQSVIQISGKVLSELWCIP*TQILIP
Trigger: TGGTATTAAAATTTGTGTTCACGGGATGCACCAAAG...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAAAGAGAAGGGGCAATTaGAAAATGGTATCTCAAGCA +
Preference number: 2 (lower is better)
Translates to: KVATFQYNFKFATNQLPSKRRGN*KMVSQA
Trigger: TGCTTGAGATACCATTTTGCAATTGCCCCTTCTCTT...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR TCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAATACCAGTGGCACTGTTaGACGAAACAAATACTTTTA +
Preference number: 2 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEYQWHC*TKQILL
Trigger: TAAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTA...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR GCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAAGATCAGTGTGGAGTaGTACAGAAATAATTATAGG +
Preference number: 2 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCKISVE*YRNNYR
Trigger: CCTATAATTATTTCTGTAGCACTCCACACTGATCTT...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR GCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAACAGTTTATTAACATGTaGTTGTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEQFINM*LCVCVC
Trigger: ACACACACACACACACAAGCACATGTTAATAAACTG...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR CAA 90 bp GAACAACAAAGGTTTTCTGAGAGAAGACAAGGTGGACTTTTCATTTaGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAAATACTTT +
Preference number: 2 (lower is better)
Translates to: EQQRFSERRQGGLFI*LVNTSGTVERNKYF
Trigger: AAAGTATTTGTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTGTCTTCTCTCAGAAAACCTTTGTTGTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR-3UTR CCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCATTCCAAAGATCAGTGTaGAGTGCTACAGAAATAATT +
Preference number: 2 (lower is better)
Translates to: KVATFQYNFKFATNQLPSFQRSV*SATEII
Trigger: AATTATTTCTGTAGCACTCCACACTGATCTTTGGAA...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAATACCAAACAATCCTaGATGCTTCACCTGGGGCTG +
Preference number: 3 (lower is better)
Translates to: KTLVSCLRGTHFGASREHNTKQS*MLHLGL
Trigger: CAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR TCA 72 bp ACAGGTAACAAGAGGAGGATTGGCATGAGCGATAAATaGCATTGGGGGAGCAATATGGAAGATCATCTGGGC +
Preference number: 3 (lower is better)
Translates to: TGNKRRIGMSDK*HWGSNMEDHLG
Trigger: GCCCAGATGATCTTCCATATTGCTCCCCCAATGTCATTTATCGCTCATGCCAATCCTCCTCTTGTTACCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR CAA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTACGGGGTACACACTTaGGTGCATCCCGTGAACACA +
Preference number: 3 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCYGVHT*VHPVNT
Trigger: TGTGTTCACGGGATGCACCAAAGTGTGTACCCCGTA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR CAA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGACTAAAGCAGCCCAGTaGCCTACCAATAAGCTCATC +
Preference number: 3 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFETKAAQ*PTNKLI
Trigger: GATGAGCTTATTGGTAGGCAACTGGGCTGCTTTAGT...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGGTGGACTTTTCATTTaGTTAGTAAATACCAGTGGC +
Preference number: 3 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGGGLFI*LVNTSG
Trigger: GCCACTGGTATTTACTAACAAAATGAAAAGTCCACC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
41% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGGTGGACTTTTCATTTaGTTAGTAAATACCAGTGGC +
Preference number: 3 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSGGLFI*LVNTSG
Trigger: GCCACTGGTATTTACTAACAAAATGAAAAGTCCACC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGATACCAGTGGCACTGTaGAACGAAACAAATACTTTT +
Preference number: 3 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGIPVAL*NETNTF
Trigger: AAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTAT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTGTTTGTGCAAGTTTTaGAAGATTCATTGGCCAAAC +
Preference number: 3 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSCLCKF*KIHWPN
Trigger: GTTTGGCCAATGAATCTTCAAAAACTTGCACAAACA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR-3UTR CAA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGGTGGACTTTTCATTTaGTTAGTAAATACCAGTGGC +
Preference number: 3 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCGGLFI*LVNTSG
Trigger: GCCACTGGTATTTACTAACAAAATGAAAAGTCCACC...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR CAA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGAATTGGAAAGTTATTaGCAACCCAAACTTAGGGGA +
Preference number: 3 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCELESY*QPKLRG
Trigger: TCCCCTAAGTTTGGGTTGCAAATAACTTTCCAATTC...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR CAA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATACCAGTGGCACTGTaGAACGAAACAAATACTTTT +
Preference number: 3 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCIPVAL*NETNTF
Trigger: AAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTAT...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTGTTTGTGCAAGTTTTaGAAGATTCATTGGCCAAAC +
Preference number: 3 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLCLCKF*KIHWPN
Trigger: GTTTGGCCAATGAATCTTCAAAAACTTGCACAAACA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
3UTR GCA 72 bp ATATTAGTTACCTTGGTTTTCAAAGGTTGTCAACTCTaGATATTGTGTGGCAAGGAGATACTATCAACATTT +
Preference number: 3 (lower is better)
Translates to: ILVTLVFKGCQL*ILCGKEILSTF
Trigger: AAATGTTGATAGTATCTCCTTGCCACACAATATGCAGAGTTGACAACCTTTGAAAACCAAGGTAACTAATAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGGCCTGTCGCCATGGTaGTGCACCGCGTTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHGLSPW*CTALLS
Trigger: GGAGAGCAACGCGGTGCATCACCATGGCGACAGGCC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCCTGTCTGTGGCTGCTaGTGTGGCTGTGGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHPVCGC*CGCGGG
Trigger: GCCGCCTCCACAGCCACAGCAGCAGCCACAGACAGG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGAGGCCGGGTGTTGCTaGGTGGCACAGGGAGAGGTG +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHEAGCC*VAQGEV
Trigger: CACCTCTCCCTGTGCCACCCAGCAACACCCGGCCTC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGAGGGCTGGCTGCCATaGGAGAGCTGCGCAGGGGAT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHEGWLP*ESCAGD
Trigger: ATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCACCGTGGGTTGCCGTaGGGGGAGCCGAGGGCCTGT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGHRGLP*GEPRAC
Trigger: ACAGGCCCTCGGCTCCCCCCACGGCAACCCACGGTG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGAGCCCTCTCCGCCGCTaGTCCTGCTGCTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFESPLRR*SCCCCR
Trigger: GCGGCAGCAGCAGCAGGAGCAGCGGCGGAGAGGGCT...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGGAGGCGGCGGTGCCTaGTGCTGCTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGGGGGA*CCCCCC
Trigger: ACAGCAGCAGCAGCAGCAGCAGGCACCGCCGCCTCC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGAGCACCGAGCCATGGTaGAGGGGTCGGCAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGSTEPW*RGRQAW
Trigger: CCAGGCCTGCCGACCCCTGCACCATGGCTCGGTGCT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000417717.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGCCCTGGCTTTCGGCTaGGCCCCCGGGCAGGATAGA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGALAFG*APGQDR
Trigger: TCTATCCTGCCCGGGGGCCCAGCCGAAAGCCAGGGC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCTGCTGTGGCTGTaGAGGCGGCGGTGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLLLWL*RRRCLL
Trigger: CAGCAGGCACCGCCGCCTCCACAGCCACAGCAGCAG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTCTCTCCCTCCCTCCTaGTCACTCGGGTTCTTCGGT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHSLPPS*SLGFFG
Trigger: ACCGAAGAACCCGAGTGAGCAGGAGGGAGGGAGAGA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCTGCCATGGGAGAGCTaGGCAGGGGATGGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSLPWES*AGDGGC
Trigger: GCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGGACAGAGGGCTGGCTaGCATGGGAGAGCTGCGCAG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGGQRAG*HGRAAQ
Trigger: CTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGTCC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGGGCCTGTCTGTGGCTaGTGCTGTGGCTGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSGPVCG*CCGCGG
Trigger: GCCTCCACAGCCACAGCAGCAGCCACAGACAGGCCC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGCGGGCAATCTTGGCTaGTGGACCCTTCGGATCACT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHAGNLG*WTLRIT
Trigger: AGTGATCCGAAGGGTCCACCAGCCAAGATTGCCCGC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGAGGGCTGGCTGCCATaGGAGAGCTGCGCAGGGGAT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGEGWLP*ESCAGD
Trigger: ATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCCCAGGGTGCAGGTTTaGAAGAGGTGTCCGGACAGA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHPRVQV*KRCPDR
Trigger: TCTGTCCGGACACCTCTTCCAAACCTGCACCCTGGG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGTAGCTGTTTTCACCTaGGGAGGACGGCTGGGTGGT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHVAVFT*GGRLGG
Trigger: ACCACCCAGCCGTCCTCCCCAGGTGAAAACAGCTAC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCACCGTGGGTTGCCGTaGGGGGAGCCGAGGGCCTGT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLHRGLP*GEPRAC
Trigger: ACAGGCCCTCGGCTCCCCCCACGGCAACCCACGGTG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCACCGTGGGTTGCCGTaGGGGGAGCCGAGGGCCTGT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNHRGLP*GEPRAC
Trigger: ACAGGCCCTCGGCTCCCCCCACGGCAACCCACGGTG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCCTCTCCCTGCCCATTaGCGCGGGGCTGTGAGCGTC +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCPLPAH*RGAVSV
Trigger: GACGCTCACAGCCCCGCGTCAATGGGCAGGGAGAGG...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCCTCTCCCTGCCCATTaGCGCGGGGCTGTGAGCGTC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLPLPAH*RGAVSV
Trigger: GACGCTCACAGCCCCGCGTCAATGGGCAGGGAGAGG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCGCTGCCGCTGTGGGTaGCTCTTCTTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGRCRCG*LFFLLL
Trigger: GAGGAGGAGGAAGAAGAGGCACCCACAGCGGCAGCG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCAAGGACCCTCTCCCTaGCCATTGACGCGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGQGPSP*PLTRGC
Trigger: ACAGCCCCGCGTCAATGGGCAGGGAGAGGGTCCTTG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGAGCGGGCTCCCGTTCTaGTCCAGGCGGGCAATCTTG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGSGLPF*SRRAIL
Trigger: CAAGATTGCCCGCCTGGAGCAGAACGGGAGCCCGCT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGCAGGGGATGGAGGCTaGTCGGCTGTGTTCCCTGGA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGAGDGG*SAVFPG
Trigger: TCCAGGGAACACAGCCGAGCAGCCTCCATCCCCTGC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCGCCTGGGAGATTCCTaGTCGTTTCAGTTCATCGCG +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHRLGDS*SFQFIA
Trigger: CGCGATGAACTGAAACGAGCAGGAATCTCCCAGGCG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGGCGGTGCCTGCTGCTaGTGCTGCTGCTGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGGGACC*CCCCCC
Trigger: ACAGCAACAGCAGCAGCAGCAGCAGCAGGCACCGCC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCCTCTAGAGTCGCCCTaGCTTTCGGCTGGGCCCCCG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNPLESP*LSAGPP
Trigger: CGGGGGCCCAGCCGAAAGCCAGGGCGACTCTAGAGG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGAGCTGCGCAGGGGATaGAGGCTGCTCGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSELRRG*RLLGCV
Trigger: AACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGGAACCTTCGGATCATaGAGAGGTTCTCCCACAGGG +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHGTFGS*RGSPTG
Trigger: CCCTGTGGGAGAACCTCTCCATGATCCGAAGGTTCC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTGCTCTGCTGGAACATaGATAATGTGGGGCGGCCTG +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHCSAGT*IMWGGL
Trigger: CAGGCCGCCCCACATTATCCATGTTCCAGCAGAGCA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCTGCTGCTGTGGCTGTaGAGGCGGCGGTGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLLLLWL*RRRCLL
Trigger: CAGCAGGCACCGCCGCCTCCACAGCCACAGCAGCAG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAGCAGCACCGAGCCATaGTGCAGGGGTCGGCAGGCC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNSSTEP*CRGRQA
Trigger: GGCCTGCCGACCCCTGCACCATGGCTCGGTGCTGCT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000417717.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGCATCACGTTCTGGCTaGGGAAGACTGAGGAACCTT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHASRSG*GRLRNL
Trigger: AAGGTTCCTCAGTCTTCCTCAGCCAGAACGTGATGC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGGCCTGTCGCCATGGTaGTGCACCGCGTTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLGLSPW*CTALLS
Trigger: GGAGAGCAACGCGGTGCATCACCATGGCGACAGGCC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGGCCCACGTCTTGTATaGAACTCTGGAGGATTCCCA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHGPRLV*NSGGFP
Trigger: TGGGAATCCTCCAGAGTTTCATACAAGACGTGGGCC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGGACAGAGGGCTGGCTaGCATGGGAGAGCTGCGCAG +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCGQRAG*HGRAAQ
Trigger: CTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGTCC...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAGGAGGCGGCGGTGCCTaGTGCTGCTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSGGGGA*CCCCCC
Trigger: ACAGCAGCAGCAGCAGCAGCAGGCACCGCCGCCTCC...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCCTGTCTGTGGCTGCTaGTGTGGCTGTGGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNPVCGC*CGCGGG
Trigger: GCCGCCTCCACAGCCACAGCAGCAGCCACAGACAGG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGGGCCTGTCTGTGGCTaGTGCTGTGGCTGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNGPVCG*CCGCGG
Trigger: GCCTCCACAGCCACAGCAGCAGCCACAGACAGGCCC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCCGAATAACGCGCATTaGGAAGGCCACCTCGCCTCC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGPNNAH*EGHLAS
Trigger: GGAGGCGAGGTGGCCTTCCCAATGCGCGTTATTCGG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGAGCATTCCTCACTGTaGTGTGCGACCATTGTTCGG +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHEHSSL*CATIVR
Trigger: CCGAACAATGGTCGCACACCACAGTGAGGAATGCTC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCGTGCAAATACCGCCTaGGAGATTCCTGCTCGTTTC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHRANTA*EIPARF
Trigger: GAAACGAGCAGGAATCTCCCAGGCGGTATTTGCACG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACACTGGGATGCAGTCTTaGGGTCCTCTTCCTTTCGGA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHTGMQS*GPLPFG
Trigger: TCCGAAAGGAAGAGGACCCCAAGACTGCATCCCAGT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTCGGGTTCTTCGGTGTaGGGACAGAAAGTCTACTTC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHSGSSV*GQKVYF
Trigger: GAAGTAGACTTTCTGTCCTCACACCGAAGAACCCGA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTGGCCAAAATTGACATaGTTGGCGCCTTGCTGGGAT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHWPKLT*LAPCWD
Trigger: ATCCCAGCAAGGCGCCAATCATGTCAATTTTGGCCA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAAGTCCCCGGACGGGGCTaGTTCTCTCGCTCTCTCCCT +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEVPGRG*FSRSLP
Trigger: AGGGAGAGAGCGAGAGAAGCAGCCCCGTCCGGGGAC...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCAAGGACCCTCTCCCTaGCCATTGACGCGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCQGPSP*PLTRGC
Trigger: ACAGCCCCGCGTCAATGGGCAGGGAGAGGGTCCTTG...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCACTCCCTGCATTTTTaGACCTGTACTCCCAAGCCT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHHSLHF*TCTPKP
Trigger: AGGCTTGGGAGTACAGGTGCAAAAATGCAGGGAGTG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGCAGGGGATGGAGGCTaGTCGGCTGTGTTCCCTGGA +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCAGDGG*SAVFPG
Trigger: TCCAGGGAACACAGCCGAGCAGCCTCCATCCCCTGC...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGCAGGGGATGGAGGCTaGTCGGCTGTGTTCCCTGGA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLAGDGG*SAVFPG
Trigger: TCCAGGGAACACAGCCGAGCAGCCTCCATCCCCTGC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAACTGCCATGGGAGAGCTaGGCAGGGGATGGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSELPWES*AGDGGC
Trigger: GCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAG...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGGTGATGCACCGCGTTaGTCTCCTGTTCATAAATGG +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHGDAPR*SPVHKW
Trigger: CCATTTATGAACAGGAGAGCAACGCGGTGCATCACC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAAGGGCCTGTCTGTGGCTaGTGCTGTGGCTGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEGPVCG*CCGCGG
Trigger: GCCTCCACAGCCACAGCAGCAGCCACAGACAGGCCC...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAACCGCCGCTGCCGCTGTaGGTGCCTCTTCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEPPLPL*VPLLPP
Trigger: AGGAGGAAGAAGAGGCACCCACAGCGGCAGCGGCGG...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCCGGGTGTTGCTGGGTaGCACAGGGAGAGGTGTGTG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNPGVAG*HRERCV
Trigger: CACACACCTCTCCCTGTGCCACCCAGCAACACCCGG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACATTAGCCCTTTGGCCTaGGCAGCAGAGCTATGTGAA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHISPLA*AAELCE
Trigger: TTCACATAGCTCTGCTGCCCAGGCCAAAGGGCTAAT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGAGCTGCGCAGGGGATaGAGGCTGCTCGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCELRRG*RLLGCV
Trigger: AACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTC...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGAGCTGCGCAGGGGATaGAGGCTGCTCGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNELRRG*RLLGCV
Trigger: AACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCCCAGGGTGCAGGTTTaGAAGAGGTGTCCGGACAGA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGPRVQV*KRCPDR
Trigger: TCTGTCCGGACACCTCTTCCAAACCTGCACCCTGGG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGGAACATGGATAATGTaGGGCGGCCTGTCGCCATGG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGGTWIM*GGLSPW
Trigger: CCATGGCGACAGGCCGCCCCACATTATCCATGTTCC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTGGGCAGACAGAGTCTaGATGGCCTCTTCGTCAGGG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGWADRV*MASSSG
Trigger: CCCTGACGAAGAGGCCATCCAGACTCTGTCTGCCCA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCGGCTGTTGTTGTTGTaGCGAGGCCGGGTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNRLLLL*RGRVLL
Trigger: CAGCAACACCCGGCCTCGTCACAACAACAACAGCCG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTGGGGTCCCAGCAAGTaGGGAGAGAAGAGGTTCGGG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNWGPSK*GEKRFG
Trigger: CCCGAACCTCTTCTCTCCTCACTTGCTGGGACCCCA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGAGGACTGATAGGTGTTaGTACGAGCCCAGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGRTDRC*YEPRVQ
Trigger: CTGCACCCTGGGCTCGTATCAACACCTATCAGTCCT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCTTTCGGAGGATTTCTaGAAGCAAGCCCTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLSEDF*KQALSS
Trigger: AGAACTCAGGGCTTGCTTTCAGAAATCCTCCGAAAG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTTAGTGGCAAAGTGCTaGGTGAAGGGAATCCATGAC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLVAKC*VKGIHD
Trigger: GTCATGGATTCCCTTCACTCAGCACTTTGCCACTAA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCACCAGCACAAATTCTaGATGCTCCTCCTTGCAATC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHHQHKF*MLLLAI
Trigger: GATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGATACGAGCCCAGGGTaGAGGTTTGGAAGAGGTGTC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSDTSPG*RFGRGV
Trigger: GACACCTCTTCCAAACCTGCACCCTGGGCTCGTATC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGATACGAGCCCAGGGTaGAGGTTTGGAAGAGGTGTC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGDTSPG*RFGRGV
Trigger: GACACCTCTTCCAAACCTGCACCCTGGGCTCGTATC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCGCCTGGGAGATTCCTaGTCGTTTCAGTTCATCGCG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSRLGDS*SFQFIA
Trigger: CGCGATGAACTGAAACGAGCAGGAATCTCCCAGGCG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAGGCGGTGCCTGCTGCTaGTGCTGCTGCTGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSGGACC*CCCCCC
Trigger: ACAGCAACAGCAGCAGCAGCAGCAGCAGGCACCGCC...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCCGAATAACGCGCATTaGGAAGGCCACCTCGCCTCC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNPNNAH*EGHLAS
Trigger: GGAGGCGAGGTGGCCTTCCCAATGCGCGTTATTCGG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGGCAATCTTGGCTGGTaGACCCTTCGGATCACTCAC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGGNLGW*TLRITH
Trigger: GTGAGTGATCCGAAGGGTCCACCAGCCAAGATTGCC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCCAGGCGGGCAATCTTaGCTGGTGGACCCTTCGGAT +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCPGGQS*LVDPSD
Trigger: ATCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGG...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCCAGGCGGGCAATCTTaGCTGGTGGACCCTTCGGAT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNPGGQS*LVDPSD
Trigger: ATCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCCTGGATTAGCCCTTTaGCCTGGGCAGCAGAGCTAT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSPGLAL*PGQQSY
Trigger: ATAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCCTGGATTAGCCCTTTaGCCTGGGCAGCAGAGCTAT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGPGLAL*PGQQSY
Trigger: ATAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTGTGTTCCCTGGAACTaGTTGCTGGCCAAAATTGAC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHCVPWN*LLAKID
Trigger: GTCAATTTTGGCCAGCAACCAGTTCCAGGGAACACA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGGTAGCTGTTTTCACCTaGGGAGGACGGCTGGGTGGT +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEVAVFT*GGRLGG
Trigger: ACCACCCAGCCGTCCTCCCCAGGTGAAAACAGCTAC...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGGAACCTTCGGATCATaGAGAGGTTCTCCCACAGGG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSGTFGS*RGSPTG
Trigger: CCCTGTGGGAGAACCTCTCCATGATCCGAAGGTTCC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTGCTCTGCTGGAACATaGATAATGTGGGGCGGCCTG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGCSAGT*IMWGGL
Trigger: CAGGCCGCCCCACATTATCCATGTTCCAGCAGAGCA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTGCTCTGCTGGAACATaGATAATGTGGGGCGGCCTG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSCSAGT*IMWGGL
Trigger: CAGGCCGCCCCACATTATCCATGTTCCAGCAGAGCA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAAACCCCGACAAAACTaGTCAGGAGTTTCCCGAAAT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHKPRQN*SGVSRN
Trigger: ATTTCGGGAAACTCCTGATCAGTTTTGTCGGGGTTT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAAGCAAAACCCGTTATaGGCTGTACACTGTGATGGT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHKQNPL*AVHCDG
Trigger: ACCATCACAGTGTACAGCTCATAACGGGTTTTGCTT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTGCTGGTTGACCAATTaGGGACTGATAGGTGTTGAT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHCWLTN*GLIGVD
Trigger: ATCAACACCTATCAGTCCTCAATTGGTCAACCAGCA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAGATCTCAGGATGCTGTaGAAGGGGGCACTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEDLRML*KGALLG
Trigger: GCCAAGGAGTGCCCCCTTTCACAGCATCCTGAGATC...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTCTCTCCCTCCCTCCTaGTCACTCGGGTTCTTCGGT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLSLPPS*SLGFFG
Trigger: ACCGAAGAACCCGAGTGAGCAGGAGGGAGGGAGAGA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACATCTTGAAGCATATCTaGTACTGTAGCATCAGGGGC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHILKHI*YCSIRG
Trigger: GCCCCTGATGCTACAGTAGCAGATATGCTTCAAGAT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCAGCTGGACCATTACTaGAGTTCTGAGGGTGCGTCA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGQLDHY*SSEGAS
Trigger: TGACGCACCCTCAGAACTGCAGTAATGGTCCAGCTG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGCGGGCAATCTTGGCTaGTGGACCCTTCGGATCACT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLAGNLG*WTLRIT
Trigger: AGTGATCCGAAGGGTCCACCAGCCAAGATTGCCCGC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTGTCACGTAAGACAGTaGAACTGGATTCCACTTTCC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHCHVRQ*NWIPLS
Trigger: GGAAAGTGGAATCCAGTTCCACTGTCTTACGTGACA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGAGCATTCCTCACTGTaGTGTGCGACCATTGTTCGG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSEHSSL*CATIVR
Trigger: CCGAACAATGGTCGCACACCACAGTGAGGAATGCTC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGAGCATTCCTCACTGTaGTGTGCGACCATTGTTCGG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGEHSSL*CATIVR
Trigger: CCGAACAATGGTCGCACACCACAGTGAGGAATGCTC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCCCAGGGTGCAGGTTTaGAAGAGGTGTCCGGACAGA +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCPRVQV*KRCPDR
Trigger: TCTGTCCGGACACCTCTTCCAAACCTGCACCCTGGG...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCGTGCAAATACCGCCTaGGAGATTCCTGCTCGTTTC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSRANTA*EIPARF
Trigger: GAAACGAGCAGGAATCTCCCAGGCGGTATTTGCACG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCGTGCAAATACCGCCTaGGAGATTCCTGCTCGTTTC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGRANTA*EIPARF
Trigger: GAAACGAGCAGGAATCTCCCAGGCGGTATTTGCACG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGTAGCTGTTTTCACCTaGGGAGGACGGCTGGGTGGT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLVAVFT*GGRLGG
Trigger: ACCACCCAGCCGTCCTCCCCAGGTGAAAACAGCTAC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTCGCACAACCATCCCTaGCTTTTGGTTGCTGCAACC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGSHNHP*LLVAAT
Trigger: GGTTGCAGCAACCAAAAGCCAGGGATGGTTGTGCGA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGGAACATGGATAATGTaGGGCGGCCTGTCGCCATGG +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLGTWIM*GGLSPW
Trigger: CCATGGCGACAGGCCGCCCCACATTATCCATGTTCC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTCTTGTATGAAACTCTaGAGGATTCCCAAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHSCMKL*RIPKAS
Trigger: GGAAGCCTTGGGAATCCTCCAGAGTTTCATACAAGA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCAGACAGAGTCTGGATaGCCTCTTCGTCAGGGTACA +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSQTESG*PLRQGT
Trigger: TGTACCCTGACGAAGAGGCCATCCAGACTCTGTCTG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTGGGCAGACAGAGTCTaGATGGCCTCTTCGTCAGGG +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLWADRV*MASSSG
Trigger: CCCTGACGAAGAGGCCATCCAGACTCTGTCTGCCCA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTCGGGTTCTTCGGTGTaGGGACAGAAAGTCTACTTC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSSGSSV*GQKVYF
Trigger: GAAGTAGACTTTCTGTCCTCACACCGAAGAACCCGA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR TCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGAAAAAGCAGCAGACCTaGAGGCGACTTCCCCTGAAA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGKKQQT*RRLPLK
Trigger: TTTCAGGGGAAGTCGCCTTCAGGTCTGCTGCTTTTT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGCACTCCTTGGCCAATaGACTCTGATTCATATCTTT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHALLGQ*TLIHIF
Trigger: AAAGATATGAATCAGAGTTCATTGGCCAAGGAGTGC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTAGAAATCATACTCTGTaGAAGGGGGCACTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSRNHTL*KGALLG
Trigger: GCCAAGGAGTGCCCCCTTTCACAGAGTATGATTTCT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTGGCCAAAATTGACATaGTTGGCGCCTTGCTGGGAT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGWPKLT*LAPCWD
Trigger: ATCCCAGCAAGGCGCCAATCATGTCAATTTTGGCCA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGTTGCTGGCCAAAATTaGCATGATTGGCGCCTTGCT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSVAGQN*HDWRLA
Trigger: AGCAAGGCGCCAATCATGTCAATTTTGGCCAGCAAC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGTTGCTGGCCAAAATTaGCATGATTGGCGCCTTGCT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGVAGQN*HDWRLA
Trigger: AGCAAGGCGCCAATCATGTCAATTTTGGCCAGCAAC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAGGACTGATAGGTGTTaGTACGAGCCCAGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNRTDRC*YEPRVQ
Trigger: CTGCACCCTGGGCTCGTATCAACACCTATCAGTCCT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTCCCAAGGCTTCCACTaGAATTTTTGTTCGTGGCCG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSSQGFH*NFCSWP
Trigger: CGGCCACGAACAAAAATTTCAGTGGAAGCCTTGGGA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTGTCGGAGAGTCTTTTaGCCATCCTATCTCTACTTA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHCRRVF*PSYLYL
Trigger: TAAGTAGAGATAGGATGGTCAAAAGACTCTCCGACA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTTCCTCACTGTGGTGTaGGACCATTGTTCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNFLTVV*DHCSGG
Trigger: GCCTCCCGAACAATGGTCGCACACCACAGTGAGGAA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTTCCTCACTGTGGTGTaGGACCATTGTTCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLFLTVV*DHCSGG
Trigger: GCCTCCCGAACAATGGTCGCACACCACAGTGAGGAA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAATTCCTCACTGTGGTGTaGGACCATTGTTCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEFLTVV*DHCSGG
Trigger: GCCTCCCGAACAATGGTCGCACACCACAGTGAGGAA...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGATACGAGCCCAGGGTaGAGGTTTGGAAGAGGTGTC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLDTSPG*RFGRGV
Trigger: GACACCTCTTCCAAACCTGCACCCTGGGCTCGTATC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAACTGCAAGAAATTCTaGATAGCCCGAAGGTTTACC +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHNCKKF*IARRFT
Trigger: GGTAAACCTTCGGGCTATGCAGAATTTCTTGCAGTT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGGCAATCTTGGCTGGTaGACCCTTCGGATCACTCAC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLGNLGW*TLRITH
Trigger: GTGAGTGATCCGAAGGGTCCACCAGCCAAGATTGCC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGATTAGCCCTTTGGCCTaGGCAGCAGAGCTATGTGAA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGISPLA*AAELCE
Trigger: TTCACATAGCTCTGCTGCCCAGGCCAAAGGGCTAAT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCCTGGATTAGCCCTTTaGCCTGGGCAGCAGAGCTAT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLPGLAL*PGQQSY
Trigger: ATAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAACCTGGATTAGCCCTTTaGCCTGGGCAGCAGAGCTAT +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEPGLAL*PGQQSY
Trigger: ATAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGG...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTTCCACTTTCCAACCTaGATTAGCCCTTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSFHFPT*ISPLAW
Trigger: CCAGGCCAAAGGGCTAATCCAGGTTGGAAAGTGGAA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCTCGGCTGTGTTCCCTaGAACTGGTTGCTGGCCAAA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNLGCVP*NWLLAK
Trigger: TTTGGCCAGCAACCAGTTCCAGGGAACACAGCCGAG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCAGGGTTCTGTTTTCTaGAGAAGGATCTTCTTTCCA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHQGSVF*RRIFFP
Trigger: TGGAAAGAAGATCCTTCTCCAGAAAACAGAACCCTG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGGGGAAACGACGTGGTaGCTGAGGATTCTCTTAAAA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGGETTW*LRILLK
Trigger: TTTTAAGAGAATCCTCAGTCACCACGTCGTTTCCCC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
44% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGAGCTGTACACTGTaGTGGTGCTGGGGAAACGAC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLMSCTL*WCWGND
Trigger: GTCGTTTCCCCAGCACCATCACAGTGTACAGCTCAT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACATGAGCTGTACACTGTaGTGGTGCTGGGGAAACGAC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNMSCTL*WCWGND
Trigger: GTCGTTTCCCCAGCACCATCACAGTGTACAGCTCAT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTTTCGATCAGCTGGTTaGAAAGCATATCCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHFRSAG*KAYPFS
Trigger: TGAGAAAGGATATGCTTTTCAACCAGCTGATCGAAA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGCATCACGTTCTGGCTaGGGAAGACTGAGGAACCTT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLASRSG*GRLRNL
Trigger: AAGGTTCCTCAGTCTTCCTCAGCCAGAACGTGATGC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGGCCCACGTCTTGTATaGAACTCTGGAGGATTCCCA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNGPRLV*NSGGFP
Trigger: TGGGAATCCTCCAGAGTTTCATACAAGACGTGGGCC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCTTTGGTGCATCCCGTaGACACAAATTTTAATACCA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLWCIP*TQILIP
Trigger: TGGTATTAAAATTTGTGTTCACGGGATGCACCAAAG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGCTGGCCTCAATCCTGTaGCCATTAGCACACCTCATT +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFELASIL*PLAHLI
Trigger: AATGAGGTGTGCTAATGGTCACAGGATTGAGGCCAG...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGGCATGAGCGATAAATaGCATTGGGGGAGCAATATG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSGMSDK*HWGSNM
Trigger: CATATTGCTCCCCCAATGTCATTTATCGCTCATGCC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTAGAAACATCCCCAAATaGGGTGGTTACCAGTTGCCT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSRNIPK*GGYQLP
Trigger: AGGCAACTGGTAACCACCTCATTTGGGGATGTTTCT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAGCACAAATTCTGCATaGTCCTCCTTGCAATCATAT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHSTNSA*SSLQSY
Trigger: ATATGATTGCAAGGAGGAGCATGCAGAATTTGTGCT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCATTCCTCACTGTGGTGTaGGACCATTGTTCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSFLTVV*DHCSGG
Trigger: GCCTCCCGAACAATGGTCGCACACCACAGTGAGGAA...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTTGGTCGAAACCTGTTaGTCCAAAGGCTTATTCATA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLVETC*SKGLFI
Trigger: TATGAATAAGCCTTTGGAGCAACAGGTTTCGACCAA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGTTAAAAGCCACACGTaGAAATACCGCCTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSVKSHT*KYRLGD
Trigger: ATCTCCCAGGCGGTATTTGCACGTGTGGCTTTTAAC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGGTTGCTGCAACCTTTaGAAACAGTGCTTGAGACAC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSGCCNL*KQCLRH
Trigger: GTGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGGTTGCTGCAACCTTTaGAAACAGTGCTTGAGACAC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGGCCNL*KQCLRH
Trigger: GTGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCTGGCTTTTGGTTGCTaGAACCTTTGCAAACAGTGC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSLAFGC*NLCKQC
Trigger: GCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTCCCTGGCTTTTGGTTaGTGCAACCTTTGCAAACAG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSSLAFG*CNLCKQ
Trigger: CTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTGCTTCACCTGGGGCTaGCAAGCAGTTTGTAAAACA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGCFTWG*QAVCKT
Trigger: TGTTTTACAAACTGCTTGGCAGCCCCAGGTGAAGCA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAGAGCATTCCTCACTGTaGTGTGCGACCATTGTTCGG +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEEHSSL*CATIVR
Trigger: CCGAACAATGGTCGCACACCACAGTGAGGAATGCTC...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTGGTTTAAGGACTGCTaGGCTAAAAGTCTATTCACT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHWFKDC*AKSLFT
Trigger: AGTGAATAGACTTTTAGCCCAGCAGTCCTTAAACCA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGACAGGGGGAGGGTaGTTCAAGTATTGTTGGTTT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLTGGG*FKYCWF
Trigger: AAACCAACAATACTTGAACCACCCTCCCCCTGTCAG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGACTGGGATGCAGTCTTaGGGTCCTCTTCCTTTCGGA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLTGMQS*GPLPFG
Trigger: TCCGAAAGGAAGAGGACCCCAAGACTGCATCCCAGT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCATGGTATTGTTCTCTaGTTTCCCATTCCTTTCAGT +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHHGIVL*FPIPFS
Trigger: ACTGAAAGGAATGGGAAACCAGAGAACAATACCATG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTCGCACAACCATCCCTaGCTTTTGGTTGCTGCAACC +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCSHNHP*LLVAAT
Trigger: GGTTGCAGCAACCAAAAGCCAGGGATGGTTGTGCGA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTCGCACAACCATCCCTaGCTTTTGGTTGCTGCAACC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLSHNHP*LLVAAT
Trigger: GGTTGCAGCAACCAAAAGCCAGGGATGGTTGTGCGA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGAATGGCATCACGTTCTaGCTGAGGAAGACTGAGGAA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGNGITF*LRKTEE
Trigger: TTCCTCAGTCTTCCTCAGCCAGAACGTGATGCCATT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCTGAATCTGCTCTGCTaGAACATGGATAATGTGGGG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSLNLLC*NMDNVG
Trigger: CCCCACATTATCCATGTTCCAGCAGAGCAGATTCAG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCAGACAGAGTCTGGATaGCCTCTTCGTCAGGGTACA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLQTESG*PLRQGT
Trigger: TGTACCCTGACGAAGAGGCCATCCAGACTCTGTCTG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCATCCCCAAATGAGGTaGTTACCAGTTGCCTGTGAA +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSHPQMR*LPVACE
Trigger: TTCACAGGCAACTGGTAACCACCTCATTTGGGGATG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000454909.6
CDS-3UTR TCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAAAAAGCAGCAGACCTaGAGGCGACTTCCCCTGAAA +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCKKQQT*RRLPLK
Trigger: TTTCAGGGGAAGTCGCCTTCAGGTCTGCTGCTTTTT...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGTTGCCTCGTTCAAATaGTCCATACTCAGTCACTGT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSVASFK*SILSHC
Trigger: ACAGTGACTGAGTATGGATCATTTGAACGAGGCAAC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGAGAAATCATACTCTGTaGAAGGGGGCACTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLRNHTL*KGALLG
Trigger: GCCAAGGAGTGCCCCCTTTCACAGAGTATGATTTCT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAGAAATCATACTCTGTaGAAGGGGGCACTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNRNHTL*KGALLG
Trigger: GCCAAGGAGTGCCCCCTTTCACAGAGTATGATTTCT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTGGCCAAAATTGACATaGTTGGCGCCTTGCTGGGAT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNWPKLT*LAPCWD
Trigger: ATCCCAGCAAGGCGCCAATCATGTCAATTTTGGCCA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGTTGCTGGCCAAAATTaGCATGATTGGCGCCTTGCT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNVAGQN*HDWRLA
Trigger: AGCAAGGCGCCAATCATGTCAATTTTGGCCAGCAAC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTGCTGGTTGACCAATTaGGGACTGATAGGTGTTGAT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSCWLTN*GLIGVD
Trigger: ATCAACACCTATCAGTCCTCAATTGGTCAACCAGCA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTTTGCAAACAGTGCTTaGGACACTTTAGCACGCTTC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGFANSA*DTLARF
Trigger: GAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTTTGCAAACAGTGCTTaGGACACTTTAGCACGCTTC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSFANSA*DTLARF
Trigger: GAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAGGCCCACGTCTTGTATaGAACTCTGGAGGATTCCCA +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSGPRLV*NSGGFP
Trigger: TGGGAATCCTCCAGAGTTTCATACAAGACGTGGGCC...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGTTTGTGCAAGTTTTTaGAGATTCATTGGCCAAACA +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHVCASF*RFIGQT
Trigger: TGTTTGGCCAATGAATCTTCAAAAACTTGCACAAAC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAAGCTCATCAGGGCCTaGGAAGATGGTAGGCAGAAA +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCKLIRA*EDGRQK
Trigger: TTTCTGCCTACCATCTTCTCAGGCCCTGATGAGCTT...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCCATTACTGCAGTTCTaGGGGTGCGTCACAAATCAG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNPLLQF*GCVTNQ
Trigger: CTGATTTGTGACGCACCCTCAGAACTGCAGTAATGG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000454909.6
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCACTCCCTGCATTTTTaGACCTGTACTCCCAAGCCT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNHSLHF*TCTPKP
Trigger: AGGCTTGGGAGTACAGGTGCAAAAATGCAGGGAGTG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCTGCATGCTCCTCCTTaGAATCATATTCAATGGCGT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSLHAPP*NHIQWR
Trigger: ACGCCATTGAATATGATTGCAAGGAGGAGCATGCAG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGGTGATGCACCGCGTTaGTCTCCTGTTCATAAATGG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNGDAPR*SPVHKW
Trigger: CCATTTATGAACAGGAGAGCAACGCGGTGCATCACC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTAAAGCAGCCCAGTTaGCTACCAATAAGCTCATCA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLKQPS*LPISSS
Trigger: TGATGAGCTTATTGGTAGGCAACTGGGCTGCTTTAG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGCTCTGAATCTGCTCTaGTGGAACATGGATAATGTG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSALNLL*WNMDNV
Trigger: CACATTATCCATGTTCCAGCAGAGCAGATTCAGAGC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000417717.6
CDS-3UTR GCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAATTTGAGATCTCAGGATaGTGTGAAAGGGGGCACTCC +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEFEISG*CERGHS
Trigger: GGAGTGCCCCCTTTCACAGCATCCTGAGATCTCAAA...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTATGGCACTAGGACTTTaGGGGAAAAGAAACCCAGAA +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSMALGL*GKRNPE
Trigger: TTCTGGGTTTCTTTTCCCCCAAAGTCCTAGTGCCAT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAATTAGCCCTTTGGCCTaGGCAGCAGAGCTATGTGAA +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEISPLA*AAELCE
Trigger: TTCACATAGCTCTGCTGCCCAGGCCAAAGGGCTAAT...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTCCACTTTCCAACCTaGATTAGCCCTTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCFHFPT*ISPLAW
Trigger: CCAGGCCAAAGGGCTAATCCAGGTTGGAAAGTGGAA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAATTCCACTTTCCAACCTaGATTAGCCCTTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEFHFPT*ISPLAW
Trigger: CCAGGCCAAAGGGCTAATCCAGGTTGGAAAGTGGAA...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGTAAGACAGTGGAACTaGATTCCACTTTCCAACCTG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGVRQWN*IPLSNL
Trigger: CAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTAC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTGTCACGTAAGACAGTaGAACTGGATTCCACTTTCC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSCHVRQ*NWIPLS
Trigger: GGAAAGTGGAATCCAGTTCCACTGTCTTACGTGACA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAACTGGGATGCAGTCTTaGGGTCCTCTTCCTTTCGGA +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSTGMQS*GPLPFG
Trigger: TCCGAAAGGAAGAGGACCCCAAGACTGCATCCCAGT...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTTACCAGCAAAGACTaGGATGCAGTCTTGGGGTCC +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCFTSKD*DAVLGS
Trigger: GGACCCCAAGACTGCATCCCAGTCTTTGCTGGTAAA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTTTACCAGCAAAGACTaGGATGCAGTCTTGGGGTCC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNFTSKD*DAVLGS
Trigger: GGACCCCAAGACTGCATCCCAGTCTTTGCTGGTAAA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGAATGGCATCACGTTCTaGCTGAGGAAGACTGAGGAA +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFENGITF*LRKTEE
Trigger: TTCCTCAGTCTTCCTCAGCCAGAACGTGATGCCATT...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTCTCCTGTTCATAAATaGCATCACGTTCTGGCTGAG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGSPVHK*HHVLAE
Trigger: CTCAGCCAGAACGTGATGCCATTTATGAACAGGAGA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTCTCCTGTTCATAAATaGCATCACGTTCTGGCTGAG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSSPVHK*HHVLAE
Trigger: CTCAGCCAGAACGTGATGCCATTTATGAACAGGAGA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCACAGACAGAGTCTGGATaGCCTCTTCGTCAGGGTACA +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSQTESG*PLRQGT
Trigger: TGTACCCTGACGAAGAGGCCATCCAGACTCTGTCTG...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAGCTTCCAAGGCAGACTaGGTACAGTACAGGCAAATG +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEASKAD*VQYRQM
Trigger: CATTTGCCTGTACTGTACCCAGTCTGCCTTGGAAGC...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAAATACAGCTTGGGGGTaGCGGGAGGAAATATTAGCC +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTENTAWG*REEILA
Trigger: GGCTAATATTTCCTCCCGCCACCCCCAAGCTGTATT...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR TCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGGTTGCCTCGTTCAAATaGTCCATACTCAGTCACTGT +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEVASFK*SILSHC
Trigger: ACAGTGACTGAGTATGGATCATTTGAACGAGGCAAC...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCTTTCGGAGGATTTCTaGAAGCAAGCCCTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNLSEDF*KQALSS
Trigger: AGAACTCAGGGCTTGCTTTCAGAAATCCTCCGAAAG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAATCCCAAGGCTTCCACTaGAATTTTTGTTCGTGGCCG +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSESQGFH*NFCSWP
Trigger: CGGCCACGAACAAAAATTTCAGTGGAAGCCTTGGGA...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGGTATAATGCTTGTTTaGGGCTCCGGAATAAGAACT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSGIMLV*GSGIRT
Trigger: AGTTCTTATTCCGGAGCCTCAAACAAGCATTATACC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGAGAGGAGGATTGGCATaGGCGATAAATGACATTGGG +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLRGGLA*AINDIG
Trigger: CCCAATGTCATTTATCGCTCATGCCAATCCTCCTCT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTGGCAAAGTGCTGAGTaGAGGGAATCCATGACAGAT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLWQSAE*RESMTD
Trigger: ATCTGTCATGGATTCCCTTCACTCAGCACTTTGCCA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTTCTTTCCCCTGAGTTaGCTCGTTCAAATGATCCAT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSFFPLS*LVQMIH
Trigger: ATGGATCATTTGAACGAGGCAACTCAGGGGAAAGAA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCACACTCCCTGCATTTTTaGACCTGTACTCCCAAGCCT +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSHSLHF*TCTPKP
Trigger: AGGCTTGGGAGTACAGGTGCAAAAATGCAGGGAGTG...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTTTAAAGGCACTCCCTaGATTTTTGCACCTGTACTC +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSFKGTP*IFAPVL
Trigger: GAGTACAGGTGCAAAAATGCAGGGAGTGCCTTTAAA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTTTAAAGGCACTCCCTaGATTTTTGCACCTGTACTC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGFKGTP*IFAPVL
Trigger: GAGTACAGGTGCAAAAATGCAGGGAGTGCCTTTAAA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCACCAGCACAAATTCTaGATGCTCCTCCTTGCAATC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNHQHKF*MLLLAI
Trigger: GATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAACACCAGCACAAATTCTaGATGCTCCTCCTTGCAATC +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEHQHKF*MLLLAI
Trigger: GATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTG...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR GCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGATCTTGAAGCATATCTaGTACTGTAGCATCAGGGGC +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEILKHI*YCSIRG
Trigger: GCCCCTGATGCTACAGTAGCAGATATGCTTCAAGAT...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGTTAAAAGCCACACGTaGAAATACCGCCTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLVKSHT*KYRLGD
Trigger: ATCTCCCAGGCGGTATTTGCACGTGTGGCTTTTAAC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTAACCTTTGCAAACAGTaGTTGAGACACTTTAGCACG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSNLCKQ*LRHFST
Trigger: CGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGAACCTTTGCAAACAGTaGTTGAGACACTTTAGCACG +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGNLCKQ*LRHFST
Trigger: CGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCTGGCTTTTGGTTGCTaGAACCTTTGCAAACAGTGC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNLAFGC*NLCKQC
Trigger: GCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTCCCTGGCTTTTGGTTaGTGCAACCTTTGCAAACAG +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCSLAFG*CNLCKQ
Trigger: CTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTCCCTGGCTTTTGGTTaGTGCAACCTTTGCAAACAG +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLSLAFG*CNLCKQ
Trigger: CTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTGCTTCACCTGGGGCTaGCAAGCAGTTTGTAAAACA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNCFTWG*QAVCKT
Trigger: TGTTTTACAAACTGCTTGGCAGCCCCAGGTGAAGCA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAAGATCAGTGTGGAGTaGTACAGAAATAATTATAGG +
Preference number: 4 (lower is better)
Translates to: KTLVSCLRGTHFGASREHKISVE*YRNNYR
Trigger: CCTATAATTATTTCTGTAGCACTCCACACTGATCTT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAACAAGAGATTCACTGTaGTTCCAAGGCAGACTGGGT +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTETRDSL*FQGRLG
Trigger: ACCCAGTCTGCCTTGGAAGCACAGTGAATCTCTTGT...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAATTAGCCCTTTGGCCTaGGCAGCAGAGCTATGTGAA +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSISPLA*AAELCE
Trigger: TTCACATAGCTCTGCTGCCCAGGCCAAAGGGCTAAT...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGGTAAGACAGTGGAACTaGATTCCACTTTCCAACCTG +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEVRQWN*IPLSNL
Trigger: CAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTAC...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGCAAGTCTTCTAGTTTaGGGCAACTGTGTAACTGAA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGASLLV*GNCVTE
Trigger: TTCAGTTACACAGTTGCCCCAAACTAGAAGACTTGC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAAAGGGGGCACTCCTTaGCCAATGAACTCTGATTCA +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCKGGTP*PMNSDS
Trigger: TGAATCAGAGTTCATTGGCCAAGGAGTGCCCCCTTT...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGAAAGGGGGCACTCCTTaGCCAATGAACTCTGATTCA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLKGGTP*PMNSDS
Trigger: TGAATCAGAGTTCATTGGCCAAGGAGTGCCCCCTTT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAAAGGGGGCACTCCTTaGCCAATGAACTCTGATTCA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNKGGTP*PMNSDS
Trigger: TGAATCAGAGTTCATTGGCCAAGGAGTGCCCCCTTT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAAAAGGGGGCACTCCTTaGCCAATGAACTCTGATTCA +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEKGGTP*PMNSDS
Trigger: TGAATCAGAGTTCATTGGCCAAGGAGTGCCCCCTTT...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTGTGTTCCCTGGAACTaGTTGCTGGCCAAAATTGAC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLCVPWN*LLAKID
Trigger: GTCAATTTTGGCCAGCAACCAGTTCCAGGGAACACA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTGTGTTCCCTGGAACTaGTTGCTGGCCAAAATTGAC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNCVPWN*LLAKID
Trigger: GTCAATTTTGGCCAGCAACCAGTTCCAGGGAACACA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTGGTTCAAGTATTGTTaGTTTAAGGACTGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGWFKYC*FKDCWA
Trigger: AGCCCAGCAGTCCTTAAACCAACAATACTTGAACCA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTTTCCCTTTCGTCCTaGTATATTCGGTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLSLSS*YIRSLS
Trigger: TGAAAGAGACCGAATATACCAGGACGAAAGGGAAAG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCTTTCCCTTTCGTCCTaGTATATTCGGTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSLSLSS*YIRSLS
Trigger: TGAAAGAGACCGAATATACCAGGACGAAAGGGAAAG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGAATGGCATCACGTTCTaGCTGAGGAAGACTGAGGAA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLNGITF*LRKTEE
Trigger: TTCCTCAGTCTTCCTCAGCCAGAACGTGATGCCATT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCTGAATCTGCTCTGCTaGAACATGGATAATGTGGGG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNLNLLC*NMDNVG
Trigger: CCCCACATTATCCATGTTCCAGCAGAGCAGATTCAG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGATTGGGGGAGCAATATaGAAGATCATCTGGGCAAGT +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEIGGAI*KIIWAS
Trigger: ACTTGCCCAGATGATCTTCCATATTGCTCCCCCAAT...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAATTCAGAAATACAGCTTaGGGGTGGCGGGAGGAAATA +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEFRNTA*GWREEI
Trigger: TATTTCCTCCCGCCACCCCCAAGCTGTATTTCTGAA...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTAAGATAAAATTGATCTaGCAAGTGATTCGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSKIKLI*QVIRWG
Trigger: CCCCCAACGAATCACTTGTCAGATCAATTTTATCTT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGTTGCCTCGTTCAAATaGTCCATACTCAGTCACTGT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNVASFK*SILSHC
Trigger: ACAGTGACTGAGTATGGATCATTTGAACGAGGCAAC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTTTGCAAACAGTGCTTaGGACACTTTAGCACGCTTC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLFANSA*DTLARF
Trigger: GAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTTTGGTGCATCCCGTaGACACAAATTTTAATACCA +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLWCIP*TQILIP
Trigger: TGGTATTAAAATTTGTGTTCACGGGATGCACCAAAG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAACTGCATGCTCCTCCTTaGAATCATATTCAATGGCGT +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTELHAPP*NHIQWR
Trigger: ACGCCATTGAATATGATTGCAAGGAGGAGCATGCAG...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCACACCAGCACAAATTCTaGATGCTCCTCCTTGCAATC +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSHQHKF*MLLLAI
Trigger: GATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTG...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATCTTGAAGCATATCTaGTACTGTAGCATCAGGGGC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLILKHI*YCSIRG
Trigger: GCCCCTGATGCTACAGTAGCAGATATGCTTCAAGAT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAATCTTGAAGCATATCTaGTACTGTAGCATCAGGGGC +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEILKHI*YCSIRG
Trigger: GCCCCTGATGCTACAGTAGCAGATATGCTTCAAGAT...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR GCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTGTTGGTTTAAGGACTaGTGGGCTAAAAGTCTATTC +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGCWFKD*WAKSLF
Trigger: GAATAGACTTTTAGCCCAGCAGTCCTTAAACCAACA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTTGGTCGAAACCTGTTaGTCCAAAGGCTTATTCATA +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSLVETC*SKGLFI
Trigger: TATGAATAAGCCTTTGGAGCAACAGGTTTCGACCAA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAGTTAAAAGCCACACGTaGAAATACCGCCTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSVKSHT*KYRLGD
Trigger: ATCTCCCAGGCGGTATTTGCACGTGTGGCTTTTAAC...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGAACCTTTGCAAACAGTaGTTGAGACACTTTAGCACG +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFENLCKQ*LRHFST
Trigger: CGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTT...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCACTGGCTTTTGGTTGCTaGAACCTTTGCAAACAGTGC +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSLAFGC*NLCKQC
Trigger: GCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAG...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTAAAACACTGGTTTCATaGTTACGGGGTACACACTTT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSKTLVS*LRGTHF
Trigger: AAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGCCATTTCGATCAGCTaGTTGAAAAGCATATCCTTT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSAISIS*LKSISF
Trigger: AAAGGATATGCTTTTCAACCAGCTGATCGAAATGGC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGCCATTTCGATCAGCTaGTTGAAAAGCATATCCTTT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGAISIS*LKSISF
Trigger: AAAGGATATGCTTTTCAACCAGCTGATCGAAATGGC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAGTAAGACAGTGGAACTaGATTCCACTTTCCAACCTG +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEVRQWN*IPLSNL
Trigger: CAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTAC...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTGTCACGTAAGACAGTaGAACTGGATTCCACTTTCC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLCHVRQ*NWIPLS
Trigger: GGAAAGTGGAATCCAGTTCCACTGTCTTACGTGACA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAATGTCACGTAAGACAGTaGAACTGGATTCCACTTTCC +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTECHVRQ*NWIPLS
Trigger: GGAAAGTGGAATCCAGTTCCACTGTCTTACGTGACA...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCACTGACAGGGGGAGGGTaGTTCAAGTATTGTTGGTTT +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSLTGGG*FKYCWF
Trigger: AAACCAACAATACTTGAACCACCCTCCCCCTGTCAG...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCATGGTATTGTTCTCTaGTTTCCCATTCCTTTCAGT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSHGIVL*FPIPFS
Trigger: ACTGAAAGGAATGGGAAACCAGAGAACAATACCATG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCACTGAATCTGCTCTGCTaGAACATGGATAATGTGGGG +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSLNLLC*NMDNVG
Trigger: CCCCACATTATCCATGTTCCAGCAGAGCAGATTCAG...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTCTTGTATGAAACTCTaGAGGATTCCCAAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCSCMKL*RIPKAS
Trigger: GGAAGCCTTGGGAATCCTCCAGAGTTTCATACAAGA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTCTTGTATGAAACTCTaGAGGATTCCCAAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNSCMKL*RIPKAS
Trigger: GGAAGCCTTGGGAATCCTCCAGAGTTTCATACAAGA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGGGGCAATTGCAAAATaGTATCTCAAGCAACCCAGA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNGAIAK*YLKQPR
Trigger: TCTGGGTTGCTTGAGATACCATTTTGCAATTGCCCC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAACACCACACAGAAAACTaGCAGCATGGTTCCTATCAA +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEHHTEN*QHGSYQ
Trigger: TTGATAGGAACCATGCTGCCAGTTTTCTGTGTGGTG...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR TCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAAAAGCAAAACCCGTTATaGGCTGTACACTGTGATGGT +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEKQNPL*AVHCDG
Trigger: ACCATCACAGTGTACAGCTCATAACGGGTTTTGCTT...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTATTGTTAGACATTTCTaGATGTTCTTTCCCCTGAGT +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSIVRHF*MFFPLS
Trigger: ACTCAGGGGAAAGAACATTCAGAAATGTCTAACAAT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGCACTCCTTGGCCAATaGACTCTGATTCATATCTTT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLALLGQ*TLIHIF
Trigger: AAAGATATGAATCAGAGTTCATTGGCCAAGGAGTGC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAGCACTCCTTGGCCAATaGACTCTGATTCATATCTTT +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEALLGQ*TLIHIF
Trigger: AAAGATATGAATCAGAGTTCATTGGCCAAGGAGTGC...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR TCA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTTGACATTTTGCTGCTaGGACATTTGCATAGTAAGT +
Preference number: 4 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLTFCC*DICIVS
Trigger: ACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCATGCTGGTTGACCAATTaGGGACTGATAGGTGTTGAT +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSCWLTN*GLIGVD
Trigger: ATCAACACCTATCAGTCCTCAATTGGTCAACCAGCA...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTACCAGTGGCACTGTTaGACGAAACAAATACTTTTA +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSYQWHC*TKQILL
Trigger: TAAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGACAACAAAGGTTTTCTaGGAGAAGACAAGGTGGACT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLTTKVF*EKTRWT
Trigger: AGTCCACCTTGTCTTCTCTCAGAAAACCTTTGTTGT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGGTATAATGCTTGTTTaGGGCTCCGGAATAAGAACT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNGIMLV*GSGIRT
Trigger: AGTTCTTATTCCGGAGCCTCAAACAAGCATTATACC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAAAGTGAAGGGAATCCATaGCAGATTCAGATGCACAAG +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSESEGNP*QIQMHK
Trigger: CTTGTGCATCTGAATCTGTCATGGATTCCCTTCACT...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTCTTTCCCCTGAGTTaGCTCGTTCAAATGATCCAT +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCFFPLS*LVQMIH
Trigger: ATGGATCATTTGAACGAGGCAACTCAGGGGAAAGAA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGTTGGTCGAAACCTGTTaGTCCAAAGGCTTATTCATA +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFELVETC*SKGLFI
Trigger: TATGAATAAGCCTTTGGAGCAACAGGTTTCGACCAA...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAACTGCAAGAAATTCTaGATAGCCCGAAGGTTTACC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNNCKKF*IARRFT
Trigger: GGTAAACCTTCGGGCTATGCAGAATTTCTTGCAGTT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTGCTGAATCTGCTCTaGTGGAACATGGATAATGTG +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCLLNLL*WNMDNV
Trigger: CACATTATCCATGTTCCAGCAGAGCAGATTCAGCAA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTTGCTGAATCTGCTCTaGTGGAACATGGATAATGTG +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNLLNLL*WNMDNV
Trigger: CACATTATCCATGTTCCAGCAGAGCAGATTCAGCAA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000454909.6
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGAAAGGTTGTCAACTCTaGATATTGTGTGGCAAGGAG +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLKGCQL*ILCGKE
Trigger: CTCCTTGCCACACAATATGCAGAGTTGACAACCTTT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGCAAGTCTTCTAGTTTaGGGCAACTGTGTAACTGAA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNASLLV*GNCVTE
Trigger: TTCAGTTACACAGTTGCCCCAAACTAGAAGACTTGC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAGCAAGTCTTCTAGTTTaGGGCAACTGTGTAACTGAA +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEASLLV*GNCVTE
Trigger: TTCAGTTACACAGTTGCCCCAAACTAGAAGACTTGC...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTGGTTCAAGTATTGTTaGTTTAAGGACTGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNWFKYC*FKDCWA
Trigger: AGCCCAGCAGTCCTTAAACCAACAATACTTGAACCA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCTTTCCCTTTCGTCCTaGTATATTCGGTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLLSLSS*YIRSLS
Trigger: TGAAAGAGACCGAATATACCAGGACGAAAGGGAAAG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGCATGGTATTGTTCTCTaGTTTCCCATTCCTTTCAGT +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEHGIVL*FPIPFS
Trigger: ACTGAAAGGAATGGGAAACCAGAGAACAATACCATG...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCAGGGTTCTGTTTTCTaGAGAAGGATCTTCTTTCCA +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCQGSVF*RRIFFP
Trigger: TGGAAAGAAGATCCTTCTCCAGAAAACAGAACCCTG...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCAGGGTTCTGTTTTCTaGAGAAGGATCTTCTTTCCA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLQGSVF*RRIFFP
Trigger: TGGAAAGAAGATCCTTCTCCAGAAAACAGAACCCTG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTTTCGATCAGCTGGTTaGAAAGCATATCCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNFRSAG*KAYPFS
Trigger: TGAGAAAGGATATGCTTTTCAACCAGCTGATCGAAA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAATTTCGATCAGCTGGTTaGAAAGCATATCCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEFRSAG*KAYPFS
Trigger: TGAGAAAGGATATGCTTTTCAACCAGCTGATCGAAA...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR TCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCTTTGGTGCATCCCGTaGACACAAATTTTAATACCA +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCLWCIP*TQILIP
Trigger: TGGTATTAAAATTTGTGTTCACGGGATGCACCAAAG...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAATGTGCCATCTTCCCTaGAAACAATTTTGCTCACTC +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSMCHLP*KQFCSL
Trigger: GAGTGAGCAAAATTGTTTTCAGGGAAGATGGCACAT...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTCAGATGCACAAGGTTaGATATTACCCGTAAACTAC +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCSDAQG*ILPVNY
Trigger: GTAGTTTACGGGTAATATTCAACCTTGTGCATCTGA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAGCACAAATTCTGCATaGTCCTCCTTGCAATCATAT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNSTNSA*SSLQSY
Trigger: ATATGATTGCAAGGAGGAGCATGCAGAATTTGTGCT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAAGCACAAATTCTGCATaGTCCTCCTTGCAATCATAT +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTESTNSA*SSLQSY
Trigger: ATATGATTGCAAGGAGGAGCATGCAGAATTTGTGCT...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTGTTGGTTTAAGGACTaGTGGGCTAAAAGTCTATTC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNCWFKD*WAKSLF
Trigger: GAATAGACTTTTAGCCCAGCAGTCCTTAAACCAACA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTGTTGGTTTAAGGACTaGTGGGCTAAAAGTCTATTC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLCWFKD*WAKSLF
Trigger: GAATAGACTTTTAGCCCAGCAGTCCTTAAACCAACA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAAACTGCAAGAAATTCTaGATAGCCCGAAGGTTTACC +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSNCKKF*IARRFT
Trigger: GGTAAACCTTCGGGCTATGCAGAATTTCTTGCAGTT...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAAAACACTGGTTTCATaGTTACGGGGTACACACTTT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNKTLVS*LRGTHF
Trigger: AAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTAAGATCAGTGTGGAGTaGTACAGAAATAATTATAGG +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSKISVE*YRNNYR
Trigger: CCTATAATTATTTCTGTAGCACTCCACACTGATCTT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAGCCATTTCGATCAGCTaGTTGAAAAGCATATCCTTT +
Preference number: 4 (lower is better)
Translates to: VYLIPTEMTVMFQESSTEAISIS*LKSISF
Trigger: AAAGGATATGCTTTTCAACCAGCTGATCGAAATGGC...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTGGTTTAAGGACTGCTaGGCTAAAAGTCTATTCACT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLWFKDC*AKSLFT
Trigger: AGTGAATAGACTTTTAGCCCAGCAGTCCTTAAACCA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAATGGTTCAAGTATTGTTaGTTTAAGGACTGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEWFKYC*FKDCWA
Trigger: AGCCCAGCAGTCCTTAAACCAACAATACTTGAACCA...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTGTGCAAGTATTATATaGCCACAGAGTGTAATACAA +
Preference number: 4 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSCASII*PQSVIQ
Trigger: TTGTATTACACTCTGTGGCCATATAATACTTGCACA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGACTCTGCATATTGTGTaGCAAGGAGATACTATCAAC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLTLHIV*QGDTIN
Trigger: GTTGATAGTATCTCCTTGCCACACAATATGCAGAGT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
3UTR CAA 72 bp AAGCGCCACACAACTAGGACATACATATTAGTTACCTaGGTTTTCAAAGGTTGTCAACTCTGCATATTGTGT +
Preference number: 4 (lower is better)
Translates to: KRHTTRTYILVT*VFKGCQLCILC
Trigger: ACACAATATGCAGAGTTGACAACCTTTGAAAACCAAGGTAACTAATATGTATGTCCTAGTTGTGTGGCGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATTGTTAGACATTTCTaGATGTTCTTTCCCCTGAGT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLIVRHF*MFFPLS
Trigger: ACTCAGGGGAAAGAACATTCAGAAATGTCTAACAAT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTTGACATTTTGCTGCTaGGACATTTGCATAGTAAGT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLLTFCC*DICIVS
Trigger: ACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTACCAGTGGCACTGTTaGACGAAACAAATACTTTTA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLYQWHC*TKQILL
Trigger: TAAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTACCAGTGGCACTGTTaGACGAAACAAATACTTTTA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNYQWHC*TKQILL
Trigger: TAAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR TCA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTTGTGCAAGTTTTTaGAGATTCATTGGCCAAACA +
Preference number: 4 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCVCASF*RFIGQT
Trigger: TGTTTGGCCAATGAATCTTCAAAAACTTGCACAAAC...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGTTTGTGCAAGTTTTTaGAGATTCATTGGCCAAACA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLVCASF*RFIGQT
Trigger: TGTTTGGCCAATGAATCTTCAAAAACTTGCACAAAC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAAAAAACACTGGTTTCATaGTTACGGGGTACACACTTT +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEKTLVS*LRGTHF
Trigger: AAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCAGAAAGTCTACTTCTaGCTGTCACTTGCAATATTA +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLQKVYF*LSLAIL
Trigger: TAATATTGCAAGTGACAGCCAGAAGTAGACTTTCTG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR CCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAGCCATTTCGATCAGCTaGTTGAAAAGCATATCCTTT +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSAISIS*LKSISF
Trigger: AAAGGATATGCTTTTCAACCAGCTGATCGAAATGGC...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGTTCCAAAGATCAGTGTaGAGTGCTACAGAAATAATT +
Preference number: 4 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEFQRSV*SATEII
Trigger: AATTATTTCTGTAGCACTCCACACTGATCTTTGGAA...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACATAACTGCTAGAGACTaGATTTGTTTTTGTCGGAGA +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNITARD*ICFCRR
Trigger: TCTCCGACAAAAACAAATCCAGTCTCTAGCAGTTAT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR TCA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAATTGACATTTTGCTGCTaGGACATTTGCATAGTAAGT +
Preference number: 4 (lower is better)
Translates to: SIIWPQSVIQISGKVLSELTFCC*DICIVS
Trigger: ACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAA...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTTTGAATTACGGCAGTaGCATATAATACAAGGCATT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNFELRQ*HIIQGI
Trigger: AATGCCTTGTATTATATGGCACTGCCGTAATTCAAA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTTTGAATTACGGCAGTaGCATATAATACAAGGCATT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLFELRQ*HIIQGI
Trigger: AATGCCTTGTATTATATGGCACTGCCGTAATTCAAA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGCTTATAGTATGAATTaGTTGGATAACATAGAGCAC +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLAYSMN*LDNIEH
Trigger: GTGCTCTATGTTATCCAAGCAATTCATACTATAAGC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGCTTATAGTATGAATTaGTTGGATAACATAGAGCAC +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNAYSMN*LDNIEH
Trigger: GTGCTCTATGTTATCCAAGCAATTCATACTATAAGC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR GCA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCACATGACAGATTCAGATaGACAAGGTTGAATATTACC +
Preference number: 4 (lower is better)
Translates to: KVATFQYNFKFATNQLPSHDRFR*TRLNIT
Trigger: GGTAATATTCAACCTTGTGCATCTGAATCTGTCATG...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CCA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTTCCAAAGATCAGTGTaGAGTGCTACAGAAATAATT +
Preference number: 4 (lower is better)
Translates to: QGGLFILLVNTSGTVERNFQRSV*SATEII
Trigger: AATTATTTCTGTAGCACTCCACACTGATCTTTGGAA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CCA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTTCCAAAGATCAGTGTaGAGTGCTACAGAAATAATT +
Preference number: 4 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLFQRSV*SATEII
Trigger: AATTATTTCTGTAGCACTCCACACTGATCTTTGGAA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS TCA 90 bp TGGGCCCCCGGGCAGGATAGAGGGCGGCCGCGGCTGTTGTTGTTGTaGCGAGGCCGGGTGTTGCTGGGTGGCACAGGGAGAGGTGTGTGT +
Preference number: 5 (lower is better)
Translates to: WAPGQDRGRPRLLLL*RGRVLLGGTGRGVC
Trigger: ACACACACCTCTCCCTGTGCCACCCAGCAACACCCGGCCTCGTCACAACAACAACAGCCGCGGCCGCCCTCTATCCTGCCCGGGGGCCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS GCA 90 bp GCCCAGGGTGCAGGTTTGGAAGAGGTGTCCGGACAGAGGGCTGGCTaGCATGGGAGAGCTGCGCAGGGGATGGAGGCTGCTCGGCTGTGT +
Preference number: 5 (lower is better)
Translates to: AQGAGLEEVSGQRAG*HGRAAQGMEAARLC
Trigger: ACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACACCTCTTCCAAACCTGCACCCTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 90 bp ACGAGCCCAGGGTGCAGGTTTGGAAGAGGTGTCCGGACAGAGGGCTaGCTGCCATGGGAGAGCTGCGCAGGGGATGGAGGCTGCTCGGCT +
Preference number: 5 (lower is better)
Translates to: TSPGCRFGRGVRTEG*LPWESCAGDGGCSA
Trigger: AGCCGAGCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACACCTCTTCCAAACCTGCACCCTGGGCTCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 90 bp GGGTGCAGGTTTGGAAGAGGTGTCCGGACAGAGGGCTGGCTGCCATaGGAGAGCTGCGCAGGGGATGGAGGCTGCTCGGCTGTGTTCCCT +
Preference number: 5 (lower is better)
Translates to: GCRFGRGVRTEGWLP*ESCAGDGGCSAVFP
Trigger: AGGGAACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACACCTCTTCCAAACCTGCACCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 90 bp TGTCCGGACAGAGGGCTGGCTGCCATGGGAGAGCTGCGCAGGGGATaGAGGCTGCTCGGCTGTGTTCCCTGGAACTGGTTGCTGGCCAAA +
Preference number: 5 (lower is better)
Translates to: CPDRGLAAMGELRRG*RLLGCVPWNWLLAK
Trigger: TTTGGCCAGCAACCAGTTCCAGGGAACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 90 bp GAGGGCGGCCGCGGCTGTTGTTGTTGTGACGAGGCCGGGTGTTGCTaGGTGGCACAGGGAGAGGTGTGTGTGTGTTTGTGTGTGTGCGTG +
Preference number: 5 (lower is better)
Translates to: EGGRGCCCCDEAGCC*VAQGEVCVCLCVCV
Trigger: CACGCACACACACAAACACACACACACCTCTCCCTGTGCCACCCAGCAACACCCGGCCTCGTCACAACAACAACAGCCGCGGCCGCCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS GCA 90 bp TGTTGCTGGGTGGCACAGGGAGAGGTGTGTGTGTGTTTGTGTGTGTaGGTGAGTGTGAGCGCGAGTCCCCGGACGGGGCTGCTTCTCTCG +
Preference number: 5 (lower is better)
Translates to: CCWVAQGEVCVCLCV*VSVSASPRTGLLLS
Trigger: CGAGAGAAGCAGCCCCGTCCGGGGACTCGCGCTCACACTCACGCACACACACAAACACACACACACCTCTCCCTGTGCCACCCAGCAACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS GCA 90 bp GCACCTGTACTCCCAAGCCTTCCTCTTCCTAGCGGGCTCCCGTTCTaGTCCAGGCGGGCAATCTTGGCTGGTGGACCCTTCGGATCACTC +
Preference number: 5 (lower is better)
Translates to: APVLPSLPLPSGLPF*SRRAILAGGPFGSL
Trigger: GAGTGATCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGGAGCAGAACGGGAGCCCGCTAGGAAGAGGAAGGCTTGGGAGTACAGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000444341.1
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000487699.1
ENST00000493952.2
CDS GCA 90 bp ATAGAGGGCGGCCGCGGCTGTTGTTGTTGTGACGAGGCCGGGTGTTaGTGGGTGGCACAGGGAGAGGTGTGTGTGTGTTTGTGTGTGTGC +
Preference number: 5 (lower is better)
Translates to: IEGGRGCCCCDEAGC*WVAQGEVCVCLCVC
Trigger: GCACACACACAAACACACACACACCTCTCCCTGTGCCACCCAGCAACACCCGGCCTCGTCACAACAACAACAGCCGCGGCCGCCCTCTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS GCA 90 bp ACAGAGGGCTGGCTGCCATGGGAGAGCTGCGCAGGGGATGGAGGCTaGTCGGCTGTGTTCCCTGGAACTGGTTGCTGGCCAAAATTGACA +
Preference number: 5 (lower is better)
Translates to: TEGWLPWESCAGDGG*SAVFPGTGCWPKLT
Trigger: TGTCAATTTTGGCCAGCAACCAGTTCCAGGGAACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS TCA 90 bp GCCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTaGATCTGCTCTGCTGGAACATGGATAATGTGGGGCGGCCTGTCG +
Preference number: 5 (lower is better)
Translates to: ACCCCCCCCCCCCCC*ICSAGTWIMWGGLS
Trigger: CGACAGGCCGCCCCACATTATCCATGTTCCAGCAGAGCAGATTCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000454909.6
CDS CCA 90 bp ATGGGAGAGCTGCGCAGGGGATGGAGGCTGCTCGGCTGTGTTCCCTaGAACTGGTTGCTGGCCAAAATTGACATGATTGGCGCCTTGCTG +
Preference number: 5 (lower is better)
Translates to: MGELRRGWRLLGCVP*NWLLAKIDMIGALL
Trigger: CAGCAAGGCGCCAATCATGTCAATTTTGGCCAGCAACCAGTTCCAGGGAACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTCTCCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 90 bp CTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTGAATCTGCTCTaGTGGAACATGGATAATGTGGGGCGGCCTGTCGCCATGGTGATG +
Preference number: 5 (lower is better)
Translates to: LLLLLLLLLLLLNLL*WNMDNVGRPVAMVM
Trigger: CATCACCATGGCGACAGGCCGCCCCACATTATCCATGTTCCAGCAGAGCAGATTCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000454909.6
CDS GCA 90 bp GGCGGCGGTGCCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTaGTGTTGCTGCAAAGAAACAAGGAGACAATCAGAGCTCTGCTAT +
Preference number: 5 (lower is better)
Translates to: GGGACCCCCCCCCCC*CCCKETRRQSELCY
Trigger: ATAGCAGAGCTCTGATTGTCTCCTTGTTTCTTTGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGCACCGCCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CCA 90 bp CTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTGAATCTGCTCTGCTaGAACATGGATAATGTGGGGCGGCCTGTCGCCATGGTGATGCAC +
Preference number: 5 (lower is better)
Translates to: LLLLLLLLLLLNLLC*NMDNVGRPVAMVMH
Trigger: GTGCATCACCATGGCGACAGGCCGCCCCACATTATCCATGTTCCAGCAGAGCAGATTCAGCAACAGCAGCAGCAACAGCAACAGCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000454909.6
CDS TCA 90 bp AGCCATCACCAGCTGCTGGTTGACCAATTGAGGACTGATAGGTGTTaGTACGAGCCCAGGGTGCAGGTTTGGAAGAGGTGTCCGGACAGA +
Preference number: 5 (lower is better)
Translates to: SHHQLLVDQLRTDRC*YEPRVQVWKRCPDR
Trigger: TCTGTCCGGACACCTCTTCCAAACCTGCACCCTGGGCTCGTATCAACACCTATCAGTCCTCAATTGGTCAACCAGCAGCTGGTGATGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 90 bp GGTGCCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTTaGTGCAAAGAAACAAGGAGACAATCAGAGCTCTGCTATCGTGGA +
Preference number: 5 (lower is better)
Translates to: GACCCCCCCCCCCCC*CKETRRQSELCYRG
Trigger: TCCACGATAGCAGAGCTCTGATTGTCTCCTTGTTTCTTTGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGCCCAGGGTGCAGGTTaGGAAGAGGTGTCCGGACAG +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHAQGAG*EEVSGQ
Trigger: CTGTCCGGACACCTCTTCCAAACCTGCACCCTGGGC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 90 bp GCCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTaGAAAGAAACAAGGAGACAATCAGAGCTCTGCTATCGTGGAGTT +
Preference number: 5 (lower is better)
Translates to: ACCCCCCCCCCCCCC*KETRRQSELCYRGV
Trigger: AACTCCACGATAGCAGAGCTCTGATTGTCTCCTTGTTTCTTTGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCTCAGAGAACAGGGTTaGCGATGGGGAGGAGGGGAG +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLREQG*RWGGGE
Trigger: CTCCCCTCCTCCCCATCGCAAACCCTGTTCTCTGAG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS CCA 90 bp GTGATGCACCGCGTTGCTCTCCTGTTCATAAATGGCATCACGTTCTaGCTGAGGAAGACTGAGGAACCTTCGGATCATGGAGAGGTTCTC +
Preference number: 5 (lower is better)
Translates to: VMHRVALLFINGITF*LRKTEEPSDHGEVL
Trigger: GAGAACCTCTCCATGATCCGAAGGTTCCTCAGTCTTCCTCAGCCAGAACGTGATGCCATTTATGAACAGGAGAGCAACGCGGTGCATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000467628.1
ENST00000606296.1
CDS-3UTR CAA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGCCCTCTCCCTGCCCATaGACGCGGGGCTGTGAGCGT +
Preference number: 5 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEPSPCP*TRGCER
Trigger: ACGCTCACAGCCCCGCGTCAATGGGCAGGGAGAGGG...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACACCTGGATTAGCCCTTaGGCCTGGGCAGCAGAGCTA +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHTWISP*AWAAEL
Trigger: TAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGGT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS TCA 90 bp TCTTCGCGTCTCTCCCTCCCTCCTGCTCACTCGGGTTCTTCGGTGTaGGGACAGAAAGTCTACTTCTGGCTGTCACTTGCAATATTATTC +
Preference number: 5 (lower is better)
Translates to: SSRLSLPPAHSGSSV*GQKVYFWLSLAILF
Trigger: GAATAATATTGCAAGTGACAGCCAGAAGTAGACTTTCTGTCCTCACACCGAAGAACCCGAGTGAGCAGGAGGGAGGGAGAGACGCGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS TCA 90 bp TGCTCTCCTGTTCATAAATGGCATCACGTTCTGGCTGAGGAAGACTaGGGAACCTTCGGATCATGGAGAGGTTCTCCCACAGGGTTCTGT +
Preference number: 5 (lower is better)
Translates to: CSPVHKWHHVLAEED*GTFGSWRGSPTGFC
Trigger: ACAGAACCCTGTGGGAGAACCTCTCCATGATCCGAAGGTTCCTCAGTCTTCCTCAGCCAGAACGTGATGCCATTTATGAACAGGAGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000467628.1
ENST00000606296.1
CDS TCA 90 bp AGCAAGGCAGAAACATCCCCAAATGAGGTGGTTACCAGTTGCCTGTaGAGCAGCTGGACCATTACTGCAGTTCTGAGGGTGCGTCACAAA +
Preference number: 5 (lower is better)
Translates to: SKAETSPNEVVTSCL*SSWTITAVLRVRHK
Trigger: TTTGTGACGCACCCTCAGAACTGCAGTAATGGTCCAGCTGCTTCACAGGCAACTGGTAACCACCTCATTTGGGGATGTTTCTGCCTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454909.6
CDS CCA 90 bp GGACCCATGGCCGAGGCAGCATTCAAGCTCCTTTCCCTTTCGTCCTaGTATATTCGGTCTCTTTCAGCTTCCGGTAACTGCAAGAAATTC +
Preference number: 5 (lower is better)
Translates to: GPMAEAAFKLLSLSS*YIRSLSASGNCKKF
Trigger: GAATTTCTTGCAGTTACCGGAAGCTGAAAGAGACCGAATATACCAGGACGAAAGGGAAAGGAGCTTGAATGCTGCCTCGGCCATGGGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 90 bp TTCTCTCTGGCACTGCTAGCAAGGCAGAAACATCCCCAAATGAGGTaGTTACCAGTTGCCTGTGAAGCAGCTGGACCATTACTGCAGTTC +
Preference number: 5 (lower is better)
Translates to: FSLALLARQKHPQMR*LPVACEAAGPLLQF
Trigger: GAACTGCAGTAATGGTCCAGCTGCTTCACAGGCAACTGGTAACCACCTCATTTGGGGATGTTTCTGCCTTGCTAGCAGTGCCAGAGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454909.6
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACCCCTCTCCCTGCCCATaGACGCGGGGCTGTGAGCGT +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNPSPCP*TRGCER
Trigger: ACGCTCACAGCCCCGCGTCAATGGGCAGGGAGAGGG...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTCCAGGCGGGCAATCTaGGCTGGTGGACCCTTCGGA +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSSRRAI*AGGPFG
Trigger: TCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGGA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTCCAGGCGGGCAATCTaGGCTGGTGGACCCTTCGGA +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGSRRAI*AGGPFG
Trigger: TCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGGA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGCCCAGGGTGCAGGTTaGGAAGAGGTGTCCGGACAG +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGAQGAG*EEVSGQ
Trigger: CTGTCCGGACACCTCTTCCAAACCTGCACCCTGGGC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS TCA 90 bp TGCTCGGCTGTGTTCCCTGGAACTGGTTGCTGGCCAAAATTGACATaGTTGGCGCCTTGCTGGGATAGCTCAGAAAGACTATCCATTTCA +
Preference number: 5 (lower is better)
Translates to: CSAVFPGTGCWPKLT*LAPCWDSSERLSIS
Trigger: TGAAATGGATAGTCTTTCTGAGCTATCCCAGCAAGGCGCCAATCATGTCAATTTTGGCCAGCAACCAGTTCCAGGGAACACAGCCGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS TCA 90 bp GCCCACGTCTTGTATGAAACTCTGGAGGATTCCCAAGGCTTCCACTaGAATTTTTGTTCGTGGCCGGGTCTTCTGTCGGTTTTCCTCATC +
Preference number: 5 (lower is better)
Translates to: AHVLYETLEDSQGFH*NFCSWPGLLSVFLI
Trigger: GATGAGGAAAACCGACAGAAGACCCGGCCACGAACAAAAATTTCAGTGGAAGCCTTGGGAATCCTCCAGAGTTTCATACAAGACGTGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000606296.1
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCTCAGAGAACAGGGTTaGCGATGGGGAGGAGGGGAG +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSLREQG*RWGGGE
Trigger: CTCCCCTCCTCCCCATCGCAAACCCTGTTCTCTGAG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGAAGACACCTCTGTGTaGGTCGAAACCTGTTGCTCC +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHEDTSV*VETCCS
Trigger: GGAGCAACAGGTTTCGACCAACACAGAGGTGTCTTC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 90 bp CTACTGACAGGGGGAGGGTGGTTCAAGTATTGTTGGTTTAAGGACTaGTGGGCTAAAAGTCTATTCACTGCATACTGCTGGTTCAGCAGC +
Preference number: 5 (lower is better)
Translates to: LLTGGGWFKYCWFKD*WAKSLFTAYCWFSS
Trigger: GCTGCTGAACCAGCAGTATGCAGTGAATAGACTTTTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCCCCCTGTCAGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 90 bp AGTTCTGTTAAAAGCCACACGTGCAAATACCGCCTGGGAGATTCCTaGTCGTTTCAGTTCATCGCGTACCCACTGGTAGATTTCGGAAGA +
Preference number: 5 (lower is better)
Translates to: SSVKSHTCKYRLGDS*SFQFIAYPLVDFGR
Trigger: TCTTCCGAAATCTACCAGTGGGTACGCGATGAACTGAAACGAGCAGGAATCTCCCAGGCGGTATTTGCACGTGTGGCTTTTAACAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 90 bp TTGATGTGCTTCAGTCTTGCACAACTTTGCTATCTGACGAGTGGCTaGCCATCTGAGGATACGGAAGTGCCTAAGAGGCAGGACAGATTT +
Preference number: 5 (lower is better)
Translates to: LMCFSLAQLCYLTSG*PSEDTEVPKRQDRF
Trigger: AAATCTGTCCTGCCTCTTAGGCACTTCCGTATCCTCAGATGGCCAGCCACTCGTCAGATAGCAAAGTTGTGCAAGACTGAAGCACATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTTGCAGCCCGGGTTCTaGAAGAGAAGTTCAAGACTG +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLQPGF*KRSSRL
Trigger: CAGTCTTGAACTTCTCTTCAAGAACCCGGGCTGCAA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCAAAGGAGATTTCCTTaGCAGCCCGGGTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHQRRFP*QPGFLK
Trigger: CTTCAAGAACCCGGGCTGCAAAGGAAATCTCCTTTG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTCCAGGCGGGCAATCTaGGCTGGTGGACCCTTCGGA +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNSRRAI*AGGPFG
Trigger: TCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGGA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGACCTGGATTAGCCCTTaGGCCTGGGCAGCAGAGCTA +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGTWISP*AWAAEL
Trigger: TAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGGT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGCCCAGGGTGCAGGTTaGGAAGAGGTGTCCGGACAG +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLAQGAG*EEVSGQ
Trigger: CTGTCCGGACACCTCTTCCAAACCTGCACCCTGGGC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGACTGGGATGCAGTCTaGGGGTCCTCTTCCTTTCGG +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGDWDAV*GSSSFR
Trigger: CCGAAAGGAAGAGGACCCCAAGACTGCATCCCAGTC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAACCATCCCTGGCTTTaGGTTGCTGCAACCTTTGCA +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHNHPWL*VAATFA
Trigger: TGCAAAGGTTGCAGCAACCAAAAGCCAGGGATGGTT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGTACAGGCCCACGTCTaGTATGAAACTCTGGAGGAT +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHVQAHV*YETLED
Trigger: ATCCTCCAGAGTTTCATACAAGACGTGGGCCTGTAC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACACCTCTAAACCGGAATaGTCCTTCAGTTTGCCGTGG +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHTSKPE*SFSLPW
Trigger: CCACGGCAAACTGAAGGACAATTCCGGTTTAGAGGT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 90 bp GCACAACCATCCCTGGCTTTTGGTTGCTGCAACCTTTGCAAACAGTaGTTGAGACACTTTAGCACGCTTCATTTCCTGCTGAATCTCATC +
Preference number: 5 (lower is better)
Translates to: AQPSLAFGCCNLCKQ*LRHFSTLHFLLNLI
Trigger: GATGAGATTCAGCAGGAAATGAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGATGGTTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000467628.1
CDS GCA 90 bp TGCTGCTGCTGTTGCTGCAAAGAAACAAGGAGACAATCAGAGCTCTaGTATCGTGGAGTTCCACACAAAGCCGTCTCCAATCAGGAAAAA +
Preference number: 5 (lower is better)
Translates to: CCCCCCKETRRQSEL*YRGVPHKAVSNQEK
Trigger: TTTTTCCTGATTGGAGACGGCTTTGTGTGGAACTCCACGATAGCAGAGCTCTGATTGTCTCCTTGTTTCTTTGCAGCAACAGCAGCAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGTTCTTTCCCCTGAGTaGCCTCGTTCAAATGATCCA +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHVLSPE*PRSNDP
Trigger: TGGATCATTTGAACGAGGCAACTCAGGGGAAAGAAC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGCACTCCCTGCATTTTaGCACCTGTACTCCCAAGCC +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGALPAF*HLYSQA
Trigger: GGCTTGGGAGTACAGGTGCAAAAATGCAGGGAGTGC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGTTCCTTTCCTAAGGTaGGTTTTCATCAGATGGCCC +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHVPFLR*VFIRWP
Trigger: GGGCCATCTGATGAAAACCAACCTTAGGAAAGGAAC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGACCTGGATTAGCCCTTaGGCCTGGGCAGCAGAGCTA +
Preference number: 5 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFETWISP*AWAAEL
Trigger: TAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGGT...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTGTGGTGTGCGACCATaGTTCGGGAGGCAAGTCTTC +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGCGVRP*FGRQVF
Trigger: GAAGACTTGCCTCCCGAACAATGGTCGCACACCACA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCTTCCACTGAAATTTTaGTTCGTGGCCGGGTCTTCT +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLPLKF*FVAGSS
Trigger: AGAAGACCCGGCCACGAACAAAAATTTCAGTGGAAG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 90 bp TGGTATATTCGGTCTCTTTCAGCTTCCGGTAACTGCAAGAAATTCTaGATAGCCCGAAGGTTTACCAGCAAAGACTGGGATGCAGTCTTG +
Preference number: 5 (lower is better)
Translates to: WYIRSLSASGNCKKF*IARRFTSKDWDAVL
Trigger: CAAGACTGCATCCCAGTCTTTGCTGGTAAACCTTCGGGCTATGCAGAATTTCTTGCAGTTACCGGAAGCTGAAAGAGACCGAATATACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGGCACTCCCTGCATTTTaGCACCTGTACTCCCAAGCC +
Preference number: 5 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEALPAF*HLYSQA
Trigger: GGCTTGGGAGTACAGGTGCAAAAATGCAGGGAGTGC...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAACCTGGATTAGCCCTTaGGCCTGGGCAGCAGAGCTA +
Preference number: 5 (lower is better)
Translates to: VYLIPTEMTVMFQESSTETWISP*AWAAEL
Trigger: TAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGGT...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGTTGGTCGAAACCTGTaGCTCCAAAGGCTTATTCAT +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHVGRNL*LQRLIH
Trigger: ATGAATAAGCCTTTGGAGCAACAGGTTTCGACCAAC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACCTTTGCAAACAGTGCTaGAGACACTTTAGCACGCTT +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLCKQC*RHFSTL
Trigger: AAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAG...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTTGATGATGGTGTACTaGGGAAGGTCGAGCTGGGCA +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLMMVY*GRSSWA
Trigger: TGCCCAGCTCGACCTTCCCAAGTACACCATCATCAA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTACGGGGTACACACTTaGGTGCATCCCGTGAACACA +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGYGVHT*VHPVNT
Trigger: TGTGTTCACGGGATGCACCAAAGTGTGTACCCCGTA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS TCA 90 bp CTTGGCTGGTGGACCCTTCGGATCACTCACATTGTTAGACATTTCTaGATGTTCTTTCCCCTGAGTTGCCTCGTTCAAATGATCCATACT +
Preference number: 5 (lower is better)
Translates to: LGWWTLRITHIVRHF*MFFPLSCLVQMIHT
Trigger: AGTATGGATCATTTGAACGAGGCAACTCAGGGGAAAGAACATTCAGAAATGTCTAACAATGTGAGTGATCCGAAGGGTCCACCAGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000444341.1
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000487699.1
ENST00000493952.2
CDS TCA 90 bp GAGACACTGGAGTCCTATTTTTCCGCCTGCTGCAGTGGGAGCATATaGTTTGTCAGGCAAGAATTTAATAGGTTTCTTGGGCTAAGAGAG +
Preference number: 5 (lower is better)
Translates to: ETLESYFSACCSGSI*FVRQEFNRFLGLRE
Trigger: CTCTCTTAGCCCAAGAAACCTATTAAATTCTTGCCTGACAAATCATATGCTCCCACTGCAGCAGGCGGAAAAATAGGACTCCAGTGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTCAAAGGAGATTTCCTTaGCAGCCCGGGTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSQRRFP*QPGFLK
Trigger: CTTCAAGAACCCGGGCTGCAAAGGAAATCTCCTTTG...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGCACTCCCTGCATTTTaGCACCTGTACTCCCAAGCC +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNALPAF*HLYSQA
Trigger: GGCTTGGGAGTACAGGTGCAAAAATGCAGGGAGTGC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAATGTGGTGTGCGACCATaGTTCGGGAGGCAAGTCTTC +
Preference number: 5 (lower is better)
Translates to: VYLIPTEMTVMFQESSTECGVRP*FGRQVF
Trigger: GAAGACTTGCCTCCCGAACAATGGTCGCACACCACA...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTAACCATCCCTGGCTTTaGGTTGCTGCAACCTTTGCA +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSNHPWL*VAATFA
Trigger: TGCAAAGGTTGCAGCAACCAAAAGCCAGGGATGGTT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTACCTCTAAACCGGAATaGTCCTTCAGTTTGCCGTGG +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSTSKPE*SFSLPW
Trigger: CCACGGCAAACTGAAGGACAATTCCGGTTTAGAGGT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGTACGGGGTACACACTTaGGTGCATCCCGTGAACACA +
Preference number: 5 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFEYGVHT*VHPVNT
Trigger: TGTGTTCACGGGATGCACCAAAGTGTGTACCCCGTA...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAGGTATAATGCTTGTTaGAGGCTCCGGAATAAGAAC +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHRYNAC*RLRNKN
Trigger: GTTCTTATTCCGGAGCCTCAAACAAGCATTATACCT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS TCA 90 bp AAGAATATATTTTCCAGTCATCTCGAGTCTTCACCTTGGCTGCCATaGTGGACACTAAACAATGGAGTGAAGGGGAAGAGTAAGGGTGTC +
Preference number: 5 (lower is better)
Translates to: KNIFSSHLESSPWLP*WTLNNGVKGKSKGV
Trigger: GACACCCTTACTCTTCCCCTTCACTCCATTGTTTAGTGTCCATCATGGCAGCCAAGGTGAAGACTCGAGATGACTGGAAAATATATTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS GCA 90 bp CAAGTCACTTTGCATTTTTGGCAGATTCTTGCTTCAGATACCAGTTaGTTTAAACCAGGGAGCTCCATCAAACCTCAAATCAGGGTTGCC +
Preference number: 5 (lower is better)
Translates to: QVTLHFWQILASDTS*FKPGSSIKPQIRVA
Trigger: GGCAACCCTGATTTGAGGTTTGATGGAGCTCCCTGGTTTAAAGCAACTGGTATCTGAAGCAAGAATCTGCCAAAAATGCAAAGTGACTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000482788.1
CDS CCA 90 bp TCACCAGCACAAATTCTGCATGCTCCTCCTTGCAATCATATTCAATaGCGTTTTCATAATGTTCCACCACACAGAAAACTGGCAGCATGG +
Preference number: 5 (lower is better)
Translates to: SPAQILHAPPCNHIQ*RFHNVPPHRKLAAW
Trigger: CCATGCTGCCAGTTTTCTGTGTGGTGGAACATTATGAAAACGCCATTGAATATGATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000475083.5
ENST00000491519.4
CDS CCA 90 bp TGTTGCTCCAAAGGCTTATTCATAGATCTACTGACAGGGGGAGGGTaGTTCAAGTATTGTTGGTTTAAGGACTGCTGGGCTAAAAGTCTA +
Preference number: 5 (lower is better)
Translates to: CCSKGLFIDLLTGGG*FKYCWFKDCWAKSL
Trigger: TAGACTTTTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCCCCCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 90 bp GCATTACAGGAATTTGCTATGAAAGAACTCTCCAAAGAGAGACACTaGAGTCCTATTTTTCCGCCTGCTGCAGTGGGAGCATATGATTTG +
Preference number: 5 (lower is better)
Translates to: ALQEFAMKELSKERH*SPIFPPAAVGAYDL
Trigger: CAAATCATATGCTCCCACTGCAGCAGGCGGAAAAATAGGACTCCAGTGTCTCTCTTTGGAGAGTTCTTTCATAGCAAATTCCTGTAATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CCA 90 bp AAGCTATACAACTCAAGTTCAATGACAACACGCTTTCTAAGCAACTaGGGCCCTAAGAGCGCTAATGACTACCTGATCCCAGAACTTTTC +
Preference number: 5 (lower is better)
Translates to: KLYNSSSMTTRFLSN*GPKSANDYLIPELF
Trigger: GAAAAGTTCTGGGATCAGGTAGTCATTAGCGCTCTTAGGGCCCCAGTTGCTTAGAAAGCGTGTTGTCATTGAACTTGAGTTGTATAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGTTCTTTCCCCTGAGTaGCCTCGTTCAAATGATCCA +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGVLSPE*PRSNDP
Trigger: TGGATCATTTGAACGAGGCAACTCAGGGGAAAGAAC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGTTCCTTTCCTAAGGTaGGTTTTCATCAGATGGCCC +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSVPFLR*VFIRWP
Trigger: GGGCCATCTGATGAAAACCAACCTTAGGAAAGGAAC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTTGCTGCTGAGACATTaGCATAGTAAGTACTGTTCA +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLLLRH*HSKYCS
Trigger: TGAACAGTACTTACTATGCAAATGTCTCAGCAGCAA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGAAGACACCTCTGTGTaGGTCGAAACCTGTTGCTCC +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNEDTSV*VETCCS
Trigger: GGAGCAACAGGTTTCGACCAACACAGAGGTGTCTTC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGAAGACACCTCTGTGTaGGTCGAAACCTGTTGCTCC +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLEDTSV*VETCCS
Trigger: GGAGCAACAGGTTTCGACCAACACAGAGGTGTCTTC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTGGTTGCTGCAACCTTaGCAAACAGTGCTTGAGACA +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSWLLQP*QTVLET
Trigger: TGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGATCCCTGGCTTTTGGTaGCTGCAACCTTTGCAAACA +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGIPGFW*LQPLQT
Trigger: TGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGAT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTTCCACTGAAATTTTaGTTCGTGGCCGGGTCTTCT +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLPLKF*FVAGSS
Trigger: AGAAGACCCGGCCACGAACAAAAATTTCAGTGGAAG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTTGATGATGGTGTACTaGGGAAGGTCGAGCTGGGCA +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLLMMVY*GRSSWA
Trigger: TGCCCAGCTCGACCTTCCCAAGTACACCATCATCAA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACGGTGGACTTTTCATTTaGTTAGTAAATACCAGTGGC +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHGGLFI*LVNTSG
Trigger: GCCACTGGTATTTACTAACAAAATGAAAAGTCCACC...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTAATACCAAACAATCCTaGATGCTTCACCTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSNTKQS*MLHLGL
Trigger: CAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTACGGGGTACACACTTaGGTGCATCCCGTGAACACA +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLYGVHT*VHPVNT
Trigger: TGTGTTCACGGGATGCACCAAAGTGTGTACCCCGTA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAACTTCAGAAATACAGCTaGGGGGTGGCGGGAGGAAAT +
Preference number: 5 (lower is better)
Translates to: VYLIPTEMTVMFQESSTELQKYS*GVAGGN
Trigger: ATTTCCTCCCGCCACCCCCAAGCTGTATTTCTGAAG...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS CCA 90 bp TTATTCATAGATCTACTGACAGGGGGAGGGTGGTTCAAGTATTGTTaGTTTAAGGACTGCTGGGCTAAAAGTCTATTCACTGCATACTGC +
Preference number: 5 (lower is better)
Translates to: LFIDLLTGGGWFKYC*FKDCWAKSLFTAYC
Trigger: GCAGTATGCAGTGAATAGACTTTTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCCCCCTGTCAGTAGATCTATGAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTTCGGATCACTCACATaGTTAGACATTTCTGAATGT +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHFGSLT*LDISEC
Trigger: ACATTCAGAAATGTCTAACAATGTGAGTGATCCGAA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGTTGGTCGAAACCTGTaGCTCCAAAGGCTTATTCAT +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGVGRNL*LQRLIH
Trigger: ATGAATAAGCCTTTGGAGCAACAGGTTTCGACCAAC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACTTAATGTTCATGGTATaGTTCTCTGGTTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHLMFMV*FSGFPF
Trigger: GAATGGGAAACCAGAGAACAATACCATGAACATTAA...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTTTGCAAACAGTGCTaGAGACACTTTAGCACGCTT +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGLCKQC*RHFSTL
Trigger: AAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAG...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAACCATCCCTGGCTTTaGGTTGCTGCAACCTTTGCA +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNNHPWL*VAATFA
Trigger: TGCAAAGGTTGCAGCAACCAAAAGCCAGGGATGGTT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGTACAGGCCCACGTCTaGTATGAAACTCTGGAGGAT +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNVQAHV*YETLED
Trigger: ATCCTCCAGAGTTTCATACAAGACGTGGGCCTGTAC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGACCTCTAAACCGGAATaGTCCTTCAGTTTGCCGTGG +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLTSKPE*SFSLPW
Trigger: CCACGGCAAACTGAAGGACAATTCCGGTTTAGAGGT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACATACCAGTGGCACTGTaGAACGAAACAAATACTTTT +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHIPVAL*NETNTF
Trigger: AAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTAT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAACACTGGTTTCATGCTTACGGGGTACACACTTTGGTGCATCCCGTGAACACAAGTCTCTGAAATACTaGGACACAATGAAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: KTLVSCLRGTHFGASREHKSLKY*DTMKLV
Trigger: AACAAGCTTCATTGTGTCCAAGTATTTCAGAGACTT...GTGTTCACGGGATGCACCAAAGTGTGTACCCCGTAAGCATGAAACCAGTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS TCA 90 bp TATGTGAATAACCTAGAGACAGCAATGCCATTTCGATCAGCTGGTTaGAAAGCATATCCTTTCTCACCAGCACAAATTCTGCATGCTCCT +
Preference number: 5 (lower is better)
Translates to: YVNNLETAMPFRSAG*KAYPFSPAQILHAP
Trigger: AGGAGCATGCAGAATTTGTGCTGGTGAGAAAGGATATGCTTTTCAACCAGCTGATCGAAATGGCATTGCTGTCTCTAGGTTATTCACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENST00000338745.11
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000475083.5
ENST00000491519.4
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAATGGCACTAGGACTTaGGGGGAAAAGAAACCCAGA +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNNGTRT*GEKKPR
Trigger: TCTGGGTTTCTTTTCCCCCAAAGTCCTAGTGCCATT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTGGTTGCTGCAACCTTaGCAAACAGTGCTTGAGACA +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLWLLQP*QTVLET
Trigger: TGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTGGTTGCTGCAACCTTaGCAAACAGTGCTTGAGACA +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNWLLQP*QTVLET
Trigger: TGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATCCCTGGCTTTTGGTaGCTGCAACCTTTGCAAACA +
Preference number: 5 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCIPGFW*LQPLQT
Trigger: TGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGAT...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATCCCTGGCTTTTGGTaGCTGCAACCTTTGCAAACA +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLIPGFW*LQPLQT
Trigger: TGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGAT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGCTTCCACTGAAATTTTaGTTCGTGGCCGGGTCTTCT +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLLPLKF*FVAGSS
Trigger: AGAAGACCCGGCCACGAACAAAAATTTCAGTGGAAG...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAAGTACAGGCCCACGTCTaGTATGAAACTCTGGAGGAT +
Preference number: 5 (lower is better)
Translates to: SIIWPQSVIQISGKVLSEVQAHV*YETLED
Trigger: ATCCTCCAGAGTTTCATACAAGACGTGGGCCTGTAC...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACAATACCAAACAATCCTaGATGCTTCACCTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNNTKQS*MLHLGL
Trigger: CAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATT...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGAGGTATAATGCTTGTTaGAGGCTCCGGAATAAGAAC +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGRYNAC*RLRNKN
Trigger: GTTCTTATTCCGGAGCCTCAAACAAGCATTATACCT...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGACTAAAGCAGCCCAGTaGCCTACCAATAAGCTCATC +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLTKAAQ*PTNKLI
Trigger: GATGAGCTTATTGGTAGGCAACTGGGCTGCTTTAGT...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS GCA 90 bp AAAGCATATCCTTTCTCACCAGCACAAATTCTGCATGCTCCTCCTTaGAATCATATTCAATGGCGTTTTCATAATGTTCCACCACACAGA +
Preference number: 5 (lower is better)
Translates to: KAYPFSPAQILHAPP*NHIQWRFHNVPPHR
Trigger: TCTGTGTGGTGGAACATTATGAAAACGCCATTGAATATGATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTGAGAAAGGATATGCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000475083.5
ENST00000491519.4
CDS GCA 90 bp GATCAGCTGGTTGAAAAGCATATCCTTTCTCACCAGCACAAATTCTaGATGCTCCTCCTTGCAATCATATTCAATGGCGTTTTCATAATG +
Preference number: 5 (lower is better)
Translates to: DQLVEKHILSHQHKF*MLLLAIIFNGVFIM
Trigger: CATTATGAAAACGCCATTGAATATGATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTGAGAAAGGATATGCTTTTCAACCAGCTGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000475083.5
ENST00000491519.4
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTTTGCTGCTGAGACATTaGCATAGTAAGTACTGTTCA +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSLLLRH*HSKYCS
Trigger: TGAACAGTACTTACTATGCAAATGTCTCAGCAGCAA...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAAAATACCAAACAATCCTaGATGCTTCACCTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: SIIWPQSVIQISGKVLSENTKQS*MLHLGL
Trigger: CAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATT...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTTCGGATCACTCACATaGTTAGACATTTCTGAATGT +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGFGSLT*LDISEC
Trigger: ACATTCAGAAATGTCTAACAATGTGAGTGATCCGAA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTGTCTTCTTGAAATGTTaGTACCACCTTCCAAATTCT +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSVFLKC*YHLPNS
Trigger: AGAATTTGGAAGGTGGTACAAACATTTCAAGAAGAC...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGGTCTTCTTGAAATGTTaGTACCACCTTCCAAATTCT +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGVFLKC*YHLPNS
Trigger: AGAATTTGGAAGGTGGTACAAACATTTCAAGAAGAC...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp ACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGCTGCCAAGCAGTATACCAGTGGCACTGTaGAACGAAACAAATACTTTT +
Preference number: 5 (lower is better)
Translates to: TNFNTKQSLMLHLGLPSSIPVAL*NETNTF
Trigger: AAAAGTATTTGTTTCGTTCAACAGTGCCACTGGTAT...ACTGCTTGGCAGCCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGATGCTTCACCTGGGGTGTTTGTGCAAGTTTTaGAAGATTCATTGGCCAAAC +
Preference number: 5 (lower is better)
Translates to: HPVNTNFNTKQSLMLHLGCLCKF*KIHWPN
Trigger: GTTTGGCCAATGAATCTTCAAAAACTTGCACAAACA...CCCCAGGTGAAGCATCAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTCCCTGAAAACAATTTaGCTCACTCCATCCTATCAG +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLSLKTI*LTPSYQ
Trigger: CTGATAGGATGGAGTGAGCAAAATTGTTTTCAGGGA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp CAACCCAAACTTAGGGGATATAAGGAAGAGGAAGATAACTTCATGGCATTTGAGCTTGGTTTTCAAAGGTaGTCAACTCTGCATATTGTG +
Preference number: 5 (lower is better)
Translates to: QPKLRGYKEEEDNFMAFELGFQR*STLHIV
Trigger: CACAATATGCAGAGTTGACAACCTTTGAAAACCAAG...CTCAAATGCCATGAAGTTATCTTCCTCTTCCTTATATCCCCTAAGTTTGGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTATTTTGGACCTCCATaGGTTTCCACACTATCATGC +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNYFGPP*VSTLSC
Trigger: GCATGATAGTGTGGAAACCAATGGAGGTCCAAAATA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGGTGGACTTTTCATTTaGTTAGTAAATACCAGTGGC +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLGGLFI*LVNTSG
Trigger: GCCACTGGTATTTACTAACAAAATGAAAAGTCCACC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCAAGACTGGATTTGTTTTaGTCGGAGAGTCTTTTGACC +
Preference number: 5 (lower is better)
Translates to: KVATFQYNFKFATNQLPSRLDLF*SESLLT
Trigger: GGTCAAAAGACTCTCCGACAAAAACAAATCCAGTCT...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACGAATTGGAAAGTTATTaGCAACCCAAACTTAGGGGA +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNELESY*QPKLRG
Trigger: TCCCCTAAGTTTGGGTTGCAAATAACTTTCCAATTC...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp AGTATTATATGGCCACAGAGTGTAATACAAATTAGTGGCAAAGTGCTGAGTGAATGTCAACTCTGCATATaGTGTGGCAAGGAGATACTA +
Preference number: 5 (lower is better)
Translates to: SIIWPQSVIQISGKVLSECQLCI*CGKEIL
Trigger: TAGTATCTCCTTGCCACACAATATGCAGAGTTGACA...TTCACTCAGCACTTTGCCACTAATTTGTATTACACTCTGTGGCCATATAATACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp GTGTATTTAATTCCTACGGAAATGACTGTCATGTTTCAGGAGAGCAGTACTGAAAATTGTCCAACATATTaGAGATCTCAGGATGCTGTG +
Preference number: 5 (lower is better)
Translates to: VYLIPTEMTVMFQESSTENCPTY*RSQDAV
Trigger: CACAGCATCCTGAGATCTCAAATATGTTGGACAATT...TTCAGTACTGCTCTCCTGAAACATGACAGTCATTTCCGTAGGAATTAAATACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000491519.4
CDS CCA 90 bp AATCTCATCATAAATGGAAGCATTAATGTTCATGGTATTGTTCTCTaGTTTCCCATTCCTTTCAGTGGCAATAGTAGCTGTTTTCACCTG +
Preference number: 5 (lower is better)
Translates to: NLIINGSINVHGIVL*FPIPFSGNSSCFHL
Trigger: CAGGTGAAAACAGCTACTATTGCCACTGAAAGGAATGGGAAACCAGAGAACAATACCATGAACATTAATGCTTCCATTTATGATGAGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCATTGCTGCTGAGACATTaGCATAGTAAGTACTGTTCA +
Preference number: 5 (lower is better)
Translates to: KVATFQYNFKFATNQLPSLLLRH*HSKYCS
Trigger: TGAACAGTACTTACTATGCAAATGTCTCAGCAGCAA...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGGTCTTCTTGAAATGTTaGTACCACCTTCCAAATTCT +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLVFLKC*YHLPNS
Trigger: AGAATTTGGAAGGTGGTACAAACATTTCAAGAAGAC...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp ATCAGTTTATTAACATGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTAATGTTCATGGTATaGTTCTCTGGTTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: ISLLTCACVCVCVCVCVCLMFMV*FSGFPF
Trigger: GAATGGGAAACCAGAGAACAATACCATGAACATTAA...ACATACACACACACACACACACACACACACACAAGCACATGTTAATAAACTGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTTAATGTTCATGGTATaGTTCTCTGGTTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNLMFMV*FSGFPF
Trigger: GAATGGGAAACCAGAGAACAATACCATGAACATTAA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp CAAGGTGGACTTTTCATTTTGTTAGTAAATACCAGTGGCACTGTTGAACGAAACTGTTTGTGCAAGTTTTaGAAGATTCATTGGCCAAAC +
Preference number: 5 (lower is better)
Translates to: QGGLFILLVNTSGTVERNCLCKF*KIHWPN
Trigger: GTTTGGCCAATGAATCTTCAAAAACTTGCACAAACA...GTTTCGTTCAACAGTGCCACTGGTATTTACTAACAAAATGAAAAGTCCACCTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS-3UTR CAA 90 bp GTACACACTTTGGTGCATCCCGTGAACACAAATTTTAATACCAAACAATCCTTGTTCAGATGCACAAGGTaGAATATTACCCGTAAACTA +
Preference number: 5 (lower is better)
Translates to: VHTLVHPVNTNFNTKQSLFRCTR*NITRKL
Trigger: TAGTTTACGGGTAATATTCAACCTTGTGCATCTGAA...CAAGGATTGTTTGGTATTAAAATTTGTGTTCACGGGATGCACCAAAGTGTGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS-3UTR CAA 90 bp AAAGTGGCAACTTTTCAGTACAATTTTAAGTTTGCAACAAACCAGCTGCCTTCATTCGGATCACTCACATaGTTAGACATTTCTGAATGT +
Preference number: 5 (lower is better)
Translates to: KVATFQYNFKFATNQLPSFGSLT*LDISEC
Trigger: ACATTCAGAAATGTCTAACAATGTGAGTGATCCGAA...TGAAGGCAGCTGGTTTGTTGCAAACTTAAAATTGTACTGAAAAGTTGCCACTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS TCA 72 bp GACGTTGGGGGCGGCGGTGGCTGTCGAGTGCGGGCCTaGAACCAAGAACGGCTCCCCGGGCGGGCGCGCCGG +
Preference number: 6 (lower is better)
Translates to: DVGGGGGCRVRA*NQERLPGRARR
Trigger: CCGGCGCGCCCGCCCGGGGAGCCGTTCTTGGTTTCAGGCCCGCACTCGACAGCCACCGCCGCCCCCAACGTC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000440737.5
ENST00000493952.2
CDS CCA 72 bp CGGGCAGCGTCCTCTAGAGTCGCCCTGGCTTTCGGCTaGGCCCCCGGGCAGGATAGAGGGCGGCCGCGGCTG +
Preference number: 6 (lower is better)
Translates to: RAASSRVALAFG*APGQDRGRPRL
Trigger: CAGCCGCGGCCGCCCTCTATCCTGCCCGGGGGCCCAGCCGAAAGCCAGGGCGACTCTAGAGGACGCTGCCCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS CCA 72 bp GAGCCGAGGGCCTGTCTGTGGCTGCTGCTGTGGCTGTaGAGGCGGCGGTGCCTGCTGCTGCTGCTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: EPRACLWLLLWL*RRRCLLLLLLL
Trigger: CAGCAGCAGCAGCAGCAGCAGGCACCGCCGCCTCCACAGCCACAGCAGCAGCCACAGACAGGCCCTCGGCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000476178.1
ENST00000606296.1
CDS TCA 72 bp GGGCAGGATAGAGGGCGGCCGCGGCTGTTGTTGTTGTaGCGAGGCCGGGTGTTGCTGGGTGGCACAGGGAGA +
Preference number: 6 (lower is better)
Translates to: GQDRGRPRLLLL*RGRVLLGGTGR
Trigger: TCTCCCTGTGCCACCCAGCAACACCCGGCCTCGTCACAACAACAACAGCCGCGGCCGCCCTCTATCCTGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS CCA 72 bp GGGTGCAGGTTTGGAAGAGGTGTCCGGACAGAGGGCTaGCTGCCATGGGAGAGCTGCGCAGGGGATGGAGGC +
Preference number: 6 (lower is better)
Translates to: GCRFGRGVRTEG*LPWESCAGDGG
Trigger: GCCTCCATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACACCTCTTCCAAACCTGCACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CAA 90 bp GAGGCCGGGTGTTGCTGGGTGGCACAGGGAGAGGTGTGTGTGTGTTaGTGTGTGTGCGTGAGTGTGAGCGCGAGTCCCCGGACGGGGCTG +
Preference number: 6 (lower is better)
Translates to: EAGCCWVAQGEVCVC*CVCVSVSASPRTGL
Trigger: CAGCCCCGTCCGGGGACTCGCGCTCACACTCACGCACACACACAAACACACACACACCTCTCCCTGTGCCACCCAGCAACACCCGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS GCA 72 bp TGGCTGCCATGGGAGAGCTGCGCAGGGGATGGAGGCTaGTCGGCTGTGTTCCCTGGAACTGGTTGCTGGCCA +
Preference number: 6 (lower is better)
Translates to: WLPWESCAGDGG*SAVFPGTGCWP
Trigger: TGGCCAGCAACCAGTTCCAGGGAACACAGCCGAGCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAGCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 72 bp TTTGGAAGAGGTGTCCGGACAGAGGGCTGGCTGCCATaGGAGAGCTGCGCAGGGGATGGAGGCTGCTCGGCT +
Preference number: 6 (lower is better)
Translates to: FGRGVRTEGWLP*ESCAGDGGCSA
Trigger: AGCCGAGCAGCCTCCATCCCCTGCGCAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACACCTCTTCCAAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CAA 72 bp CGGCGGTGCCTGCTGCTGCTGCTGCTGCTGTTGCTGTaGCTGCTGCTGTTGCTGAGGAGCAGCACCGAGCCA +
Preference number: 6 (lower is better)
Translates to: RRCLLLLLLLLL*LLLLLRSSTEP
Trigger: TGGCTCGGTGCTGCTCCTCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGCACCGCCG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417717.6
ENST00000476178.1
CDS GCA 72 bp CTCCCAAGCCTTCCTCTTCCTAGCGGGCTCCCGTTCTaGTCCAGGCGGGCAATCTTGGCTGGTGGACCCTTC +
Preference number: 6 (lower is better)
Translates to: LPSLPLPSGLPF*SRRAILAGGPF
Trigger: GAAGGGTCCACCAGCCAAGATTGCCCGCCTGGAGCAGAACGGGAGCCCGCTAGGAAGAGGAAGGCTTGGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000444341.1
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000487699.1
ENST00000493952.2
CDS GCA 72 bp GGAGGCGGCGGTGCCTGCTGCTGCTGCTGCTGCTGTTaGTGTTGCTGCTGCTGTTGCTGCAAAGAAACAAGG +
Preference number: 6 (lower is better)
Translates to: GGGGACCCCCCC*CCCCCCCKETR
Trigger: CCTTGTTTCTTTGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGCACCGCCGCCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CAA 72 bp TGTTGCTGGGTGGCACAGGGAGAGGTGTGTGTGTGTTaGTGTGTGTGCGTGAGTGTGAGCGCGAGTCCCCGG +
Preference number: 6 (lower is better)
Translates to: CCWVAQGEVCVC*CVCVSVSASPR
Trigger: CCGGGGACTCGCGCTCACACTCACGCACACACACAAACACACACACACCTCTCCCTGTGCCACCCAGCAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS CAA 72 bp CTCAGTCACTGTCTAAAGATCACTCAGGCATGGACGTaGGGGGCGGCGGTGGCTGTCGAGTGCGGGCCTGAA +
Preference number: 6 (lower is better)
Translates to: LSHCLKITQAWT*GAAVAVECGPE
Trigger: TTCAGGCCCGCACTCGACAGCCACCGCCGCCCCCAACGTCCATGCCTGAGTGATCTTTAGACAGTGACTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000440737.5
ENST00000493952.2
CDS CCA 72 bp CGCGGCTGTTGTTGTTGTGACGAGGCCGGGTGTTGCTaGGTGGCACAGGGAGAGGTGTGTGTGTGTTTGTGT +
Preference number: 6 (lower is better)
Translates to: RGCCCCDEAGCC*VAQGEVCVCLC
Trigger: ACACAAACACACACACACCTCTCCCTGTGCCACCCAGCAACACCCGGCCTCGTCACAACAACAACAGCCGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS CAA 90 bp CGGTGCCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTaGCTGAATCTGCTCTGCTGGAACATGGATAATGTGGGGCGGCCT +
Preference number: 6 (lower is better)
Translates to: RCLLLLLLLLLLLLL*LNLLCWNMDNVGRP
Trigger: AGGCCGCCCCACATTATCCATGTTCCAGCAGAGCAGATTCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGCACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000454909.6
CDS GCA 72 bp TGTGGGGCGGCCTGTCGCCATGGTGATGCACCGCGTTaGTCTCCTGTTCATAAATGGCATCACGTTCTGGCT +
Preference number: 6 (lower is better)
Translates to: CGAACRHGDAPR*SPVHKWHHVLA
Trigger: AGCCAGAACGTGATGCCATTTATGAACAGGAGAGCAACGCGGTGCATCACCATGGCGACAGGCCGCCCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000467628.1
ENST00000606296.1
CDS CCA 72 bp GCTGTTGTTGTTGTGACGAGGCCGGGTGTTGCTGGGTaGCACAGGGAGAGGTGTGTGTGTGTTTGTGTGTGT +
Preference number: 6 (lower is better)
Translates to: AVVVVTRPGVAG*HRERCVCVCVC
Trigger: ACACACACAAACACACACACACCTCTCCCTGTGCCACCCAGCAACACCCGGCCTCGTCACAACAACAACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338745.11
CDS CCA 72 bp AGGGGATGGAGGCTGCTCGGCTGTGTTCCCTGGAACTaGTTGCTGGCCAAAATTGACATGATTGGCGCCTTG +
Preference number: 6 (lower is better)
Translates to: RGWRLLGCVPWN*LLAKIDMIGAL
Trigger: CAAGGCGCCAATCATGTCAATTTTGGCCAGCAACCAGTTCCAGGGAACACAGCCGAGCAGCCTCCATCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CAA 90 bp CGGTGCCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTaGCTGCAAAGAAACAAGGAGACAATCAGAGCTCTGCTATCGTGG +
Preference number: 6 (lower is better)
Translates to: RCLLLLLLLLLLLLL*LQRNKETIRALLSW
Trigger: CCACGATAGCAGAGCTCTGATTGTCTCCTTGTTTCTTTGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGCACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS TCA 72 bp CTCTCCCTCCCTCCTGCTCACTCGGGTTCTTCGGTGTaGGGACAGAAAGTCTACTTCTGGCTGTCACTTGCA +
Preference number: 6 (lower is better)
Translates to: LSLPPAHSGSSV*GQKVYFWLSLA
Trigger: TGCAAGTGACAGCCAGAAGTAGACTTTCTGTCCTCACACCGAAGAACCCGAGTGAGCAGGAGGGAGGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS GCA 72 bp GCCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTaGTGTTGCTGCAAAGAAACAAGGAGACAATCAGAG +
Preference number: 6 (lower is better)
Translates to: ACCCCCCCCCCC*CCCKETRRQSE
Trigger: CTCTGATTGTCTCCTTGTTTCTTTGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS GCA 72 bp GGTGCCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTaGTGCTGTTGCTGCAAAGAAACAAGGAGACAATCA +
Preference number: 6 (lower is better)
Translates to: GACCCCCCCCCC*CCCCKETRRQS
Trigger: TGATTGTCTCCTTGTTTCTTTGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS TCA 72 bp CAGCTGCTGGTTGACCAATTGAGGACTGATAGGTGTTaGTACGAGCCCAGGGTGCAGGTTTGGAAGAGGTGT +
Preference number: 6 (lower is better)
Translates to: QLLVDQLRTDRC*YEPRVQVWKRC
Trigger: ACACCTCTTCCAAACCTGCACCCTGGGCTCGTATCAACACCTATCAGTCCTCAATTGGTCAACCAGCAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 72 bp GCCGAGGCAGCATTCAAGCTCCTTTCCCTTTCGTCCTaGTATATTCGGTCTCTTTCAGCTTCCGGTAACTGC +
Preference number: 6 (lower is better)
Translates to: AEAAFKLLSLSS*YIRSLSASGNC
Trigger: GCAGTTACCGGAAGCTGAAAGAGACCGAATATACCAGGACGAAAGGGAAAGGAGCTTGAATGCTGCCTCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CAA 72 bp GCCCGAAGGTTTACCAGCAAAGACTGGGATGCAGTCTaGGGGTCCTCTTCCTTTCGGAGGATTTCTGAAAGC +
Preference number: 6 (lower is better)
Translates to: ARRFTSKDWDAV*GSSSFRRISES
Trigger: GCTTTCAGAAATCCTCCGAAAGGAAGAGGACCCCAAGACTGCATCCCAGTCTTTGCTGGTAAACCTTCGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CAA 72 bp CTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTaGCTGAATCTGCTCTGCTGGAACATGGATAATGTG +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLLLL*LNLLCWNMDNV
Trigger: CACATTATCCATGTTCCAGCAGAGCAGATTCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000454909.6
CDS CAA 72 bp CTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTaGCTGCAAAGAAACAAGGAGACAATCAGAGCTCTG +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLLLL*LQRNKETIRAL
Trigger: CAGAGCTCTGATTGTCTCCTTGTTTCTTTGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS GCA 72 bp AAAAGCCACACGTGCAAATACCGCCTGGGAGATTCCTaGTCGTTTCAGTTCATCGCGTACCCACTGGTAGAT +
Preference number: 6 (lower is better)
Translates to: KSHTCKYRLGDS*SFQFIAYPLVD
Trigger: ATCTACCAGTGGGTACGCGATGAACTGAAACGAGCAGGAATCTCCCAGGCGGTATTTGCACGTGTGGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 72 bp CAATATTATTCTTCAATAACCCCGAATAACGCGCATTaGGAAGGCCACCTCGCCTCCCTTCCAATCACCCCC +
Preference number: 6 (lower is better)
Translates to: QYYSSITPNNAH*EGHLASLPITP
Trigger: GGGGGTGATTGGAAGGGAGGCGAGGTGGCCTTCCCAATGCGCGTTATTCGGGGTTATTGAAGAATAATATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338745.11
ENST00000417717.6
CDS CCA 72 bp CCCGAAGGTTTACCAGCAAAGACTGGGATGCAGTCTTaGGGTCCTCTTCCTTTCGGAGGATTTCTGAAAGCA +
Preference number: 6 (lower is better)
Translates to: PEGLPAKTGMQS*GPLPFGGFLKA
Trigger: TGCTTTCAGAAATCCTCCGAAAGGAAGAGGACCCCAAGACTGCATCCCAGTCTTTGCTGGTAAACCTTCGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 72 bp CGCGTTGCTCTCCTGTTCATAAATGGCATCACGTTCTaGCTGAGGAAGACTGAGGAACCTTCGGATCATGGA +
Preference number: 6 (lower is better)
Translates to: RVALLFINGITF*LRKTEEPSDHG
Trigger: TCCATGATCCGAAGGTTCCTCAGTCTTCCTCAGCCAGAACGTGATGCCATTTATGAACAGGAGAGCAACGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000467628.1
ENST00000606296.1
CDS CCA 72 bp TTCAGTCTTGCACAACTTTGCTATCTGACGAGTGGCTaGCCATCTGAGGATACGGAAGTGCCTAAGAGGCAG +
Preference number: 6 (lower is better)
Translates to: FSLAQLCYLTSG*PSEDTEVPKRQ
Trigger: CTGCCTCTTAGGCACTTCCGTATCCTCAGATGGCCAGCCACTCGTCAGATAGCAAAGTTGTGCAAGACTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CAA 90 bp CCACTGGTAGATTTCGGAAGACACCTCTGTGTTGGTCGAAACCTGTaGCTCCAAAGGCTTATTCATAGATCTACTGACAGGGGGAGGGTG +
Preference number: 6 (lower is better)
Translates to: PLVDFGRHLCVGRNL*LQRLIHRSTDRGRV
Trigger: CACCCTCCCCCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAACAGGTTTCGACCAACACAGAGGTGTCTTCCGAAATCTACCAGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 72 bp TTCAGTAAGTCCTTCAGAGCATTCCTCACTGTGGTGTaGGACCATTGTTCGGGAGGCAAGTCTTCTAGTTTG +
Preference number: 6 (lower is better)
Translates to: FSKSFRAFLTVV*DHCSGGKSSSL
Trigger: CAAACTAGAAGACTTGCCTCCCGAACAATGGTCGCACACCACAGTGAGGAATGCTCTGAAGGACTTACTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000440737.5
ENST00000454909.6
ENST00000475083.5
ENST00000482788.1
ENST00000491519.4
CDS GCA 72 bp GGGGGAGGGTGGTTCAAGTATTGTTGGTTTAAGGACTaGTGGGCTAAAAGTCTATTCACTGCATACTGCTGG +
Preference number: 6 (lower is better)
Translates to: GGGWFKYCWFKD*WAKSLFTAYCW
Trigger: CCAGCAGTATGCAGTGAATAGACTTTTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 72 bp CGGTCTCTTTCAGCTTCCGGTAACTGCAAGAAATTCTaGATAGCCCGAAGGTTTACCAGCAAAGACTGGGAT +
Preference number: 6 (lower is better)
Translates to: RSLSASGNCKKF*IARRFTSKDWD
Trigger: ATCCCAGTCTTTGCTGGTAAACCTTCGGGCTATGCAGAATTTCTTGCAGTTACCGGAAGCTGAAAGAGACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 72 bp TCCCTGGCTTTTGGTTGCTGCAACCTTTGCAAACAGTaGTTGAGACACTTTAGCACGCTTCATTTCCTGCTG +
Preference number: 6 (lower is better)
Translates to: SLAFGCCNLCKQ*LRHFSTLHFLL
Trigger: CAGCAGGAAATGAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000467628.1
CDS CAA 72 bp AACTCTGGAGGATTCCCAAGGCTTCCACTGAAATTTTaGTTCGTGGCCGGGTCTTCTGTCGGTTTTCCTCAT +
Preference number: 6 (lower is better)
Translates to: NSGGFPRLPLKF*FVAGSSVGFPH
Trigger: ATGAGGAAAACCGACAGAAGACCCGGCCACGAACAAAAATTTCAGTGGAAGCCTTGGGAATCCTCCAGAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000606296.1
CDS TCA 72 bp TTGTATGAAACTCTGGAGGATTCCCAAGGCTTCCACTaGAATTTTTGTTCGTGGCCGGGTCTTCTGTCGGTT +
Preference number: 6 (lower is better)
Translates to: LYETLEDSQGFH*NFCSWPGLLSV
Trigger: AACCGACAGAAGACCCGGCCACGAACAAAAATTTCAGTGGAAGCCTTGGGAATCCTCCAGAGTTTCATACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000606296.1
CDS TCA 72 bp TTTTCCAGTCATCTCGAGTCTTCACCTTGGCTGCCATaGTGGACACTAAACAATGGAGTGAAGGGGAAGAGT +
Preference number: 6 (lower is better)
Translates to: FSSHLESSPWLP*WTLNNGVKGKS
Trigger: ACTCTTCCCCTTCACTCCATTGTTTAGTGTCCATCATGGCAGCCAAGGTGAAGACTCGAGATGACTGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS GCA 72 bp TGTTGCTGCAAAGAAACAAGGAGACAATCAGAGCTCTaGTATCGTGGAGTTCCACACAAAGCCGTCTCCAAT +
Preference number: 6 (lower is better)
Translates to: CCCKETRRQSEL*YRGVPHKAVSN
Trigger: ATTGGAGACGGCTTTGTGTGGAACTCCACGATAGCAGAGCTCTGATTGTCTCCTTGTTTCTTTGCAGCAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CCA 72 bp AACTCAAGTTCAATGACAACACGCTTTCTAAGCAACTaGGGCCCTAAGAGCGCTAATGACTACCTGATCCCA +
Preference number: 6 (lower is better)
Translates to: NSSSMTTRFLSN*GPKSANDYLIP
Trigger: TGGGATCAGGTAGTCATTAGCGCTCTTAGGGCCCCAGTTGCTTAGAAAGCGTGTTGTCATTGAACTTGAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CAA 90 bp CAACCATCCCTGGCTTTTGGTTGCTGCAACCTTTGCAAACAGTGCTaGAGACACTTTAGCACGCTTCATTTCCTGCTGAATCTCATCATA +
Preference number: 6 (lower is better)
Translates to: QPSLAFGCCNLCKQC*RHFSTLHFLLNLII
Trigger: TATGATGAGATTCAGCAGGAAATGAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGATGGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000467628.1
CDS CAA 90 bp AAGACATTTCAGAAAGGTGAGCTACAGAGCAGCGGGGAAAGAAATTaGTGTTCTGCTCCGTTTCATTGGATGGCCAGGAAGAACAGAAGA +
Preference number: 6 (lower is better)
Translates to: KTFQKGELQSSGERN*CSAPFHWMARKNRR
Trigger: TCTTCTGTTCTTCCTGGCCATCCAATGAAACGGAGCAGAACACAAATTTCTTTCCCCGCTGCTCTGTAGCTCACCTTTCTGAAATGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS GCA 72 bp ATTTCGGAAGACACCTCTGTGTTGGTCGAAACCTGTTaGTCCAAAGGCTTATTCATAGATCTACTGACAGGG +
Preference number: 6 (lower is better)
Translates to: ISEDTSVLVETC*SKGLFIDLLTG
Trigger: CCCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAACAGGTTTCGACCAACACAGAGGTGTCTTCCGAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS GCA 72 bp AAAACAAAGTTGATGTGCTTCAGTCTTGCACAACTTTaGTATCTGACGAGTGGCTGGCCATCTGAGGATACG +
Preference number: 6 (lower is better)
Translates to: KTKLMCFSLAQL*YLTSGWPSEDT
Trigger: CGTATCCTCAGATGGCCAGCCACTCGTCAGATAGCAAAGTTGTGCAAGACTGAAGCACATCAACTTTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CCA 72 bp GGAGGGTGGTTCAAGTATTGTTGGTTTAAGGACTGCTaGGCTAAAAGTCTATTCACTGCATACTGCTGGTTC +
Preference number: 6 (lower is better)
Translates to: GGWFKYCWFKDC*AKSLFTAYCWF
Trigger: GAACCAGCAGTATGCAGTGAATAGACTTTTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 72 bp GATCTACTGACAGGGGGAGGGTGGTTCAAGTATTGTTaGTTTAAGGACTGCTGGGCTAAAAGTCTATTCACT +
Preference number: 6 (lower is better)
Translates to: DLLTGGGWFKYC*FKDCWAKSLFT
Trigger: AGTGAATAGACTTTTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCCCCCTGTCAGTAGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 72 bp AAAGGCTTATTCATAGATCTACTGACAGGGGGAGGGTaGTTCAAGTATTGTTGGTTTAAGGACTGCTGGGCT +
Preference number: 6 (lower is better)
Translates to: KGLFIDLLTGGG*FKYCWFKDCWA
Trigger: AGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCCCCCTGTCAGTAGATCTATGAATAAGCCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CCA 72 bp CAAAGAAACAAGGAGACAATCAGAGCTCTGCTATCGTaGAGTTCCACACAAAGCCGTCTCCAATCAGGAAAA +
Preference number: 6 (lower is better)
Translates to: QRNKETIRALLS*SSTQSRLQSGK
Trigger: TTTTCCTGATTGGAGACGGCTTTGTGTGGAACTCCACGATAGCAGAGCTCTGATTGTCTCCTTGTTTCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CAA 72 bp GATTTCGGAAGACACCTCTGTGTTGGTCGAAACCTGTaGCTCCAAAGGCTTATTCATAGATCTACTGACAGG +
Preference number: 6 (lower is better)
Translates to: DFGRHLCVGRNL*LQRLIHRSTDR
Trigger: CCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAACAGGTTTCGACCAACACAGAGGTGTCTTCCGAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS CAA 72 bp CTGGCTTTTGGTTGCTGCAACCTTTGCAAACAGTGCTaGAGACACTTTAGCACGCTTCATTTCCTGCTGAAT +
Preference number: 6 (lower is better)
Translates to: LAFGCCNLCKQC*RHFSTLHFLLN
Trigger: ATTCAGCAGGAAATGAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
ENST00000467628.1
CDS CAA 72 bp ATCCCCCTGAGCAAGATGGCAGTGTATTGTTATCTCTaGCTAAAAAGCCTATGGTTAGACTGGCAGGAGGAA +
Preference number: 6 (lower is better)
Translates to: IPLSKMAVYCYL*LKSLWLDWQEE
Trigger: TTCCTCCTGCCAGTCTAACCATAGGCTTTTTAGCAAGAGATAACAATACACTGCCATCTTGCTCAGGGGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000467628.1
ENST00000606296.1
CDS TCA 72 bp GAGTCCTATTTTTCCGCCTGCTGCAGTGGGAGCATATaGTTTGTCAGGCAAGAATTTAATAGGTTTCTTGGG +
Preference number: 6 (lower is better)
Translates to: ESYFSACCSGSI*FVRQEFNRFLG
Trigger: CCCAAGAAACCTATTAAATTCTTGCCTGACAAATCATATGCTCCCACTGCAGCAGGCGGAAAAATAGGACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CCA 72 bp AGCATGGTTCCTTTCCTAAGGTTGGTTTTCATCAGATaGCCCGAGTGTTTTAAAGGCACTCCCTGCATTTTT +
Preference number: 6 (lower is better)
Translates to: SMVPFLRLVFIR*PECFKGTPCIF
Trigger: AAAAATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTGATGAAAACCAACCTTAGGAAAGGAACCATGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
CDS CAA 90 bp TGGCCTTGTGTAGACAACAGGGCTTTCAGCTTTTCAAGATTTGGCTaGAAGGTATTTACCTTTCCTAAGGTTGGTTTTCATCAGATGGCC +
Preference number: 6 (lower is better)
Translates to: WPCVDNRAFSFSRFG*KVFTFPKVGFHQMA
Trigger: GGCCATCTGATGAAAACCAACCTTAGGAAAGGTAAATACCTTCAAGCCAAATCTTGAAAAGCTGAAAGCCCTGTTGTCTACACAAGGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000487699.1
CDS CCA 72 bp CACCTGCCAGAATTTAAAAAGAAGACACGTTATAGTTaGGCGGGGACCTACGTGTATATATGTGTCCTATGT +
Preference number: 6 (lower is better)
Translates to: HLPEFKKKTRYS*AGTYVYICVLC
Trigger: ACATAGGACACATATATACACGTAGGTCCCCGCCCAACTATAACGTGTCTTCTTTTTAAATTCTGGCAGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000452260.6
CDS GCA 72 bp GTTGAAAAGCATATCCTTTCTCACCAGCACAAATTCTaGATGCTCCTCCTTGCAATCATATTCAATGGCGTT +
Preference number: 6 (lower is better)
Translates to: VEKHILSHQHKF*MLLLAIIFNGV
Trigger: AACGCCATTGAATATGATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTGAGAAAGGATATGCTTTTCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000475083.5
ENST00000491519.4
CDS CCA 72 bp AATGGCGTTTTCATAATGTTCCACCACACAGAAAACTaGCAGCATGGTTCCATTTATCTTCAGAAGAACCCA +
Preference number: 6 (lower is better)
Translates to: NGVFIMFHHTEN*QHGSIYLQKNP
Trigger: TGGGTTCTTCTGAAGATAAATGGAACCATGCTGCCAGTTTTCTGTGTGGTGGAACATTATGAAAACGCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000475083.5
CDS CCA 72 bp AGGTATTTACCTTTCCTAAGGTTGGTTTTCATCAGATaGCCCGAGTGTTTTAAAGGCACTCCCTGCATTTTT +
Preference number: 6 (lower is better)
Translates to: RYLPFLRLVFIR*PECFKGTPCIF
Trigger: AAAAATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTGATGAAAACCAACCTTAGGAAAGGTAAATACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000487699.1
CDS CCA 72 bp CAAATTCTGCATGCTCCTCCTTGCAATCATATTCAATaGCGTTTTCATAATGTTCCACCACACAGAAAACTG +
Preference number: 6 (lower is better)
Translates to: QILHAPPCNHIQ*RFHNVPPHRKL
Trigger: CAGTTTTCTGTGTGGTGGAACATTATGAAAACGCCATTGAATATGATTGCAAGGAGGAGCATGCAGAATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENST00000338745.11
ENST00000414509.5
ENST00000415069.5
ENST00000417717.6
ENST00000440737.5
ENST00000452260.6
ENST00000454909.6
ENST00000457005.5
ENST00000475083.5
ENST00000491519.4
CDS TCA 72 bp CTAGTTTGGGGCAACTGTGTAACTGAATTTTCAATGTaGCCACATGATACACATCTTGAAGCATATCTGCTA +
Preference number: 6 (lower is better)
Translates to: LVWGNCVTEFSM*PHDTHLEAYLL
Trigger: TAGCAGATATGCTTCAAGATGTGTATCATGTGGTCACATTGAAAATTCAGTTACACAGTTGCCCCAAACTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000440737.5
ENST00000454909.6
ENST00000475083.5
ENST00000482788.1
ENST00000491519.4
CDS TCA 72 bp CTCCTCTTTCTGGACAGAATCCAATGTATAAAATTGTaGTTCTACAAACTTCCTTTACAGCAACAGCGGTTG +
Preference number: 6 (lower is better)
Translates to: LLFLDRIQCIKL*FYKLPLQQQRL
Trigger: CAACCGCTGTTGCTGTAAAGGAAGTTTGTAGAATCACAATTTTATACATTGGATTCTGTCCAGAAAGAGGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000606296.1
CDS CAA 72 bp GTAGACAACAGGGCTTTCAGCTTTTCAAGATTTGGCTaGAAGGTATTTACCTTTCCTAAGGTTGGTTTTCAT +
Preference number: 6 (lower is better)
Translates to: VDNRAFSFSRFG*KVFTFPKVGFH
Trigger: ATGAAAACCAACCTTAGGAAAGGTAAATACCTTCAAGCCAAATCTTGAAAAGCTGAAAGCCCTGTTGTCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000487699.1
CDS TCA 72 bp TTTGTACCACCTTCCAAATTCTTGACATTTTGCTGCTaGGACATTTGCATAGTAAGTACTGTTCACAATGGA +
Preference number: 6 (lower is better)
Translates to: FVPPSKFLTFCC*DICIVSTVHNG
Trigger: TCCATTGTGAACAGTACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAAGAATTTGGAAGGTGGTACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338745.11
ENST00000417717.6
ENST00000454909.6
CDS TCA 72 bp GTAAGTTTTTCAGGCTTTCACGATTATTTTAGTGCTTaGTATCCTAAAGGGAAGCTCTTTGTCAACTTGTTT +
Preference number: 6 (lower is better)
Translates to: VSFSGFHDYFSA*YPKGKLFVNLF
Trigger: AAACAAGTTGACAAAGAGCTTCCCTTTAGGATATCAAGCACTAAAATAATCGTGAAAGCCTGAAAAACTTAC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000606296.1