Pregenerated sensors for RPS27A (Homo sapiens)
Ensembl gene IDs: ENSG00000143947Ensembl transcript IDs: ENST00000272317.11, ENST00000402285.7, ENST00000404735.1, ENST00000463185.1, ENST00000495843.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAATTGAAAATATCAAGACCTTTACAAGTGGTTGGCACCTGGCAGGTATACAGAACTACTAAAAGGAAATaGTGTGACCATCAATTTGGT | + |
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Preference number: 2 (lower is better) Translates to: ELKISRPLQVVGTWQVYRTTKRK*CDHQFG Trigger: ACCAAATTGATGGTCACACCATTTCCTTTTAGTAGT...TCTGTATACCTGCCAGGTGCCAACCACTTGTAAAGGTCTTGATATTTTCAATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000272317.11 |
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| 3UTR CCA 72 bp | CTAAGAATTGAAAATATCAAGACCTTTACAAGTGGTTaGCACCTGGCAGGTATACAGAACCACTGGGTCACA | + |
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Preference number: 3 (lower is better) Translates to: LRIENIKTFTSG*HLAGIQNHWVT Trigger: TGTGACCCAGTGGTTCTGTATACCTGCCAGGTGCCAACCACTTGTAAAGGTCTTGATATTTTCAATTCTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000272317.11 |
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| CDS-3UTR GCA 90 bp | AGGTATACAGAACCACTGGGTCACATAATCCCCAGAGGCAACATTCACACAGCGCGAGAGCAGCCGAAGTaGAGACACCCACCGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: RYTEPLGHIIPRGNIHTAREQPK*RHPPQM Trigger: CATCTGCGGTGGGTGTCTGCACTTCGGCTGCTCTCG...CGCTGTGTGAATGTTGCCTCTGGGGATTATGTGACCCAGTGGTTCTGTATACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404735.1 |
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| CDS-3UTR CCA 90 bp | TTGGCACCTGGCAGGTATACAGAACCACTGGGTCACATAATCCCCAGAGGCAACCAAGACCTTTACAAGTaGTTGGCACCTGGCAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: LAPGRYTEPLGHIIPRGNQDLYK*LAPGRY Trigger: ATACCTGCCAGGTGCCAACCACTTGTAAAGGTCTTG...GTTGCCTCTGGGGATTATGTGACCCAGTGGTTCTGTATACCTGCCAGGTGCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000272317.11 |
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| CDS-3UTR CCA 90 bp | GGTCACATAATCCCCAGAGGCAACATTCACACAGCGATAGCAGTAGCACTACTACAAGTGGTTGGCACCTaGCAGGTATACAGAACCACT | + |
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Preference number: 4 (lower is better) Translates to: GHIIPRGNIHTAIAVALLQVVGT*QVYRTT Trigger: AGTGGTTCTGTATACCTGCCAGGTGCCAACCACTTG...TAGTAGTGCTACTGCTATCGCTGTGTGAATGTTGCCTCTGGGGATTATGTGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000272317.11 |
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| CDS-3UTR CCA 90 bp | CATAATCCCCAGAGGCAACATTCACACAGCGATAGCAGTAGCACTACTAAAAGGACCTTTACAAGTGGTTaGCACCTGGCAGGTATACAG | + |
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Preference number: 4 (lower is better) Translates to: HNPQRQHSHSDSSSTTKRTFTSG*HLAGIQ Trigger: CTGTATACCTGCCAGGTGCCAACCACTTGTAAAGGT...CCTTTTAGTAGTGCTACTGCTATCGCTGTGTGAATGTTGCCTCTGGGGATTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000272317.11 |
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| CDS-3UTR CCA 90 bp | GAAAATATCAAGACCTTTACAAGTGGTTGGCACCTGGCAGGTATACAGAACCACACTACTAAAAGGAAATaGTGTGACCATCAATTTGGT | + |
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Preference number: 4 (lower is better) Translates to: ENIKTFTSGWHLAGIQNHTTKRK*CDHQFG Trigger: ACCAAATTGATGGTCACACCATTTCCTTTTAGTAGT...GTGGTTCTGTATACCTGCCAGGTGCCAACCACTTGTAAAGGTCTTGATATTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000272317.11 |
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| CDS-3UTR CCA 90 bp | ATTCACACAGCGATAGCAGTAGCACTACTAAAAGGAAATGGTGTGACCATCAATACTACTAAAAGGAAATaGTGTGACCATCAATTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: IHTAIAVALLKGNGVTINTTKRK*CDHQFG Trigger: ACCAAATTGATGGTCACACCATTTCCTTTTAGTAGT...ATTGATGGTCACACCATTTCCTTTTAGTAGTGCTACTGCTATCGCTGTGTGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000272317.11 ENST00000404735.1 |
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| CDS GCA 90 bp | TTCATCTCCCCAGCCCAGAGCGGGCGGCGGCCGCAGGGCCACACGTaGTCGCACCCGGCGGGCAGAGCGTCTCCTTCCCCACCGCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: FISPAQSGRRPQGHT*SHPAGRASPSPPQL Trigger: GAGCTGCGGTGGGGAAGGAGACGCTCTGCCCGCCGGGTGCGAGCACGTGTGGCCCTGCGGCCGCCGCCCGCTCTGGGCTGGGGAGATGAA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000463185.1 |
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| CDS GCA 90 bp | CTGCGGAAGCGGGGGTTCAGCCCTTTCTCTCCTGTAGCGCCTCCCTaGTTTCAACCGCCGAGTCTCTCCCAGCCTAGGGAAGAGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: LRKRGFSPFSPVAPP*FQPPSLSQPREESG Trigger: CCCAGACTCTTCCCTAGGCTGGGAGAGACTCGGCGGTTGAAAGCAGGGAGGCGCTACAGGAGAGAAAGGGCTGAACCCCCGCTTCCGCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000402285.7 |
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| CDS CCA 90 bp | AGCGACAGGGCTGAGACCTACTCGAGAGACCTATTACCCACCCAGTaGGCAACCTCCCAAGTCGGCTACCGGAAAGCACCTTCATCTCCC | + |
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Preference number: 5 (lower is better) Translates to: SDRAETYSRDLLPTQ*ATSQVGYRKAPSSP Trigger: GGGAGATGAAGGTGCTTTCCGGTAGCCGACTTGGGAGGTTGCCCACTGGGTGGGTAATAGGTCTCTCGAGTAGGTCTCAGCCCTGTCGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000463185.1 |
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| CDS CCA 90 bp | AGAAGCGGTGATGGGCAGAGAATCAGCAATCTACCAGACGCTCCTTaGGCCTTCAAGGGAAGGGAATTTGCGTGGCCTGCTCCAGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: RSGDGQRISNLPDAP*AFKGREFAWPAPGK Trigger: TTTGCCTGGAGCAGGCCACGCAAATTCCCTTCCCTTGAAGGCCCAAGGAGCGTCTGGTAGATTGCTGATTCTCTGCCCATCACCGCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000402285.7 |
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| CDS TCA 90 bp | TCATTTAGTTTGACAATTACCACTGAACCGAACCAGCGACAGGGCTaGGACCTACTCGAGAGACCTATTACCCACCCAGTGGGCAACCTC | + |
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Preference number: 5 (lower is better) Translates to: SFSLTITTEPNQRQG*DLLERPITHPVGNL Trigger: GAGGTTGCCCACTGGGTGGGTAATAGGTCTCTCGAGTAGGTCTCAGCCCTGTCGCTGGTTCGGTTCAGTGGTAATTGTCAAACTAAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000463185.1 |
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| CDS-3UTR CAA 90 bp | ATTCACACAGCGATAGCAGTAGCACTACTAAAAGGAAATGGTGTGACCATCAATGACCTTTACAAGTGGTaGGCACCTGGCAGGTATACA | + |
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Preference number: 5 (lower is better) Translates to: IHTAIAVALLKGNGVTINDLYKW*APGRYT Trigger: TGTATACCTGCCAGGTGCCAACCACTTGTAAAGGTC...ATTGATGGTCACACCATTTCCTTTTAGTAGTGCTACTGCTATCGCTGTGTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000272317.11 |
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| CDS GCA 72 bp | CCAGCCCAGAGCGGGCGGCGGCCGCAGGGCCACACGTaGTCGCACCCGGCGGGCAGAGCGTCTCCTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: PAQSGRRPQGHT*SHPAGRASPSP Trigger: TGGGGAAGGAGACGCTCTGCCCGCCGGGTGCGAGCACGTGTGGCCCTGCGGCCGCCGCCCGCTCTGGGCTGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000463185.1 |
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| CDS CCA 72 bp | AGCTGGAACCCCTCGAGAGGAGACAGGTCCAGCCTTTaGCCACCGAAAATCACCTCTAGGTCGTTGCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SWNPSRGDRSSL*PPKITSRSLLS Trigger: GCTGAGCAACGACCTAGAGGTGATTTTCGGTGGCCAAAGGCTGGACCTGTCTCCTCTCGAGGGGTTCCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000463185.1 |
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| CDS CCA 72 bp | GCTGAGACCTACTCGAGAGACCTATTACCCACCCAGTaGGCAACCTCCCAAGTCGGCTACCGGAAAGCACCT | + |
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Preference number: 6 (lower is better) Translates to: AETYSRDLLPTQ*ATSQVGYRKAP Trigger: AGGTGCTTTCCGGTAGCCGACTTGGGAGGTTGCCCACTGGGTGGGTAATAGGTCTCTCGAGTAGGTCTCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000463185.1 |
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| CDS CCA 72 bp | GATGGGCAGAGAATCAGCAATCTACCAGACGCTCCTTaGGCCTTCAAGGGAAGGGAATTTGCGTGGCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: DGQRISNLPDAP*AFKGREFAWPA Trigger: AGCAGGCCACGCAAATTCCCTTCCCTTGAAGGCCCAAGGAGCGTCTGGTAGATTGCTGATTCTCTGCCCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000402285.7 |
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| CDS TCA 72 bp | TTGACAATTACCACTGAACCGAACCAGCGACAGGGCTaGGACCTACTCGAGAGACCTATTACCCACCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: LTITTEPNQRQG*DLLERPITHPV Trigger: CACTGGGTGGGTAATAGGTCTCTCGAGTAGGTCTCAGCCCTGTCGCTGGTTCGGTTCAGTGGTAATTGTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000463185.1 |
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| CDS CAA 72 bp | TCCAGCCTTTGGCCACCGAAAATCACCTCTAGGTCGTaGCTCAGCAAAAGGTACTCATTTCAAAGCTTAAGT | + |
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Preference number: 6 (lower is better) Translates to: SSLWPPKITSRS*LSKRYSFQSLS Trigger: ACTTAAGCTTTGAAATGAGTACCTTTTGCTGAGCAACGACCTAGAGGTGATTTTCGGTGGCCAAAGGCTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000463185.1 |
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| CDS TCA 72 bp | CAGCCCCCAAACCCAATAAAGTATCAGATTCTTAACTaGCAGTTTATAGGGACATTAAAGAATGCATTACAT | + |
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Preference number: 6 (lower is better) Translates to: QPPNPIKYQILN*QFIGTLKNALH Trigger: ATGTAATGCATTCTTTAATGTCCCTATAAACTGTCAGTTAAGAATCTGATACTTTATTGGGTTTGGGGGCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495843.1 |
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