Pregenerated sensors for RPA2 (Homo sapiens)
Ensembl gene IDs: ENSG00000117748Ensembl transcript IDs: ENST00000313433.11, ENST00000373909.7, ENST00000373912.8, ENST00000444045.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCAAGAAGAGAAACTCCTaGGCACTATGTAAGTACTCT | + |
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Preference number: 2 (lower is better) Translates to: ENRQRPAGFSARALPITPKKRNS*ALCKYS Trigger: AGAGTACTTACATAGTGCTCAGGAGTTTCTCTTCTT...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| 3UTR TCA 72 bp | AGAAACACACGTCATGGCAAGTGTGTCAAAAAGTCATaGCAAGCAGGAAAGTGCAATTCTGAAAGTAATGCC | + |
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Preference number: 3 (lower is better) Translates to: RNTRHGKCVKKS*QAGKCNSESNA Trigger: GGCATTACTTTCAGAATTGCACTTTCCTGCTTGTCATGACTTTTTGACACACTTGCCATGACGTGTGTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR GCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCAAGAGGCCGAGAAGGTaGGGGTCTGGGGGAATAGCG | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPKRPRR*GSGGIA Trigger: CGCTATTCCCCCAGACCCGCACCTTCTCGGCCTCTT...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR GCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCTTCGGCTTGAGAAGGTaGGGGCGATCCAAAGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPFGLRR*GRSKAP Trigger: GGGGGCTTTGGATCGCCCGCACCTTCTCAAGCCGAA...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR CCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCGCCACTGCGCCGCTCTaGCTACTTTTCTCTGGCACC | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPATAPL*LLFSGT Trigger: GGTGCCAGAGAAAAGTAGCCAGAGCGGCGCAGTGGC...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR TCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCCTGGGCTCGGGCTCTTaGTTTCTTTTCGGCTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPLGSGS*FLFGLR Trigger: TCTCAAGCCGAAAAGAAATCAAGAGCCCGAGCCCAG...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR GCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCCCCCGTATGAGGAGCTaGCATAGCTTTCGAATCCAC | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPPRMRS*HSFRIH Trigger: GTGGATTCGAAAGCTATGGCAGCTCCTCATACGGGG...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 57% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR CCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCCTGGCTACTTTTCTCTaGCACCACAAACGCCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPLATFL*HHKRLP Trigger: GGGAAGGCGTTTGTGGTGCCAGAGAAAAGTAGCCAG...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR CCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCCTGCCTATAACGCCCTaGTCCTGCTCATCTTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPLPITP*SCSSFS Trigger: GCTGAAAGATGAGCAGGACCAGGGCGTTATAGGCAG...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR CCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCCACTGTTCCACATCTTaGTCACGATTCTCCGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPHCSTS*SRFSAK Trigger: CTTTGCGGAGAATCGTGACCAAGATGTGGAACAGTG...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR GCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCATAACGCCCTGGTCCTaGTCATCTTTCAGCAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPITPWS*SSFSSK Trigger: TTTACTGCTGAAAGATGAGCAGGACCAGGGCGTTAT...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR CCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCCAGAAACACACGTCATaGCAAGTGTGTCAAAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPQKHTS*QVCQKV Trigger: GACTTTTTGACACACTTGCCATGACGTGTGTTTCTG...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR TCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCCACAATAGTGACCTGTaGAATCTCAACATTCCCAAT | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPHNSDL*NLNIPN Trigger: ATTGGGAATGTTGAGATTTCACAGGTCACTATTGTG...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR TCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCTGTGTCAAAAAGTCATaGCAAGCAGGAAAGTGCAAT | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPCVKKS*QAGKCN Trigger: ATTGCACTTTCCTGCTTGTCATGACTTTTTGACACA...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR CCA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCCAACCCTTCAGGTCTTaGACAAGCCTTAATCAAATT | + |
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Preference number: 4 (lower is better) Translates to: ENRQRPAGFSARALPITPQPFRS*TSLNQI Trigger: AATTTGATTAAGGCTTGTCCAAGACCTGAAGGGTTG...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS GCA 90 bp | TCCGAGAAACCCGCAGGCTCCCGGAGGCTTCGCCCCTTCAAACACTaGCCGAGTCTCCCTAACCTTCCTCGCCGCCTTCCTGCGGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: SEKPAGSRRLRPFKH*PSLPNLPRRLPAGD Trigger: GTCACCCGCAGGAAGGCGGCGAGGAAGGTTAGGGAGACTCGGGCAGTGTTTGAAGGGGCGAAGCCTCCGGGAGCCTGCGGGTTTCTCGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000313433.11 |
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| CDS CCA 90 bp | ATCTTGGTCACGATTCTCCGCAAAGAGGCCGAGAAGGTGCGGGTCTaGGGGAATAGCGGAAAACCACAGAACGCGGCCGCCACTGCGCCG | + |
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Preference number: 5 (lower is better) Translates to: ILVTILRKEAEKVRV*GNSGKPQNAAATAP Trigger: CGGCGCAGTGGCGGCCGCGTTCTGTGGTTTTCCGCTATTCCCCCAGACCCGCACCTTCTCGGCCTCTTTGCGGAGAATCGTGACCAAGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000373912.8 ENST00000444045.1 |
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| CDS-3UTR CAA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCGCTGGGCTCGGGCTCTaGATTTCTTTTCGGCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: ENRQRPAGFSARALPITPAGLGL*ISFRLE Trigger: CTCAAGCCGAAAAGAAATCAAGAGCCCGAGCCCAGC...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS-3UTR CAA 90 bp | GAAAACAGGCAGAGGCCAGCAGGTTTCTCGGCTAGGGCTCTGCCTATAACGCCCGGCTGGCTGTTGGCTTaGCTTAGTACCATGTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: ENRQRPAGFSARALPITPGWLLA*LSTMCA Trigger: TGCACACATGGTACTAAGCAAAGCCAACAGCCAGCC...GGGCGTTATAGGCAGAGCCCTAGCCGAGAAACCTGCTGGCCTCTGCCTGTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373912.8 |
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| CDS GCA 90 bp | CATAGCTTTCGAATCCACGGATGCTACGCTTGTTCCTGTCTCCTCTaGCCATGCTCCAGAAAACGCGTACTGCGCTCCCAGTTGGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: HSFRIHGCYACSCLL*PCSRKRVLRSQLAP Trigger: TGGAGCCAACTGGGAGCGCAGTACGCGTTTTCTGGAGCATGGGCAGAGGAGACAGGAACAAGCGTAGCATCCGTGGATTCGAAAGCTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373909.7 |
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| CDS GCA 72 bp | CCCGCAGGCTCCCGGAGGCTTCGCCCCTTCAAACACTaGCCGAGTCTCCCTAACCTTCCTCGCCGCCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: PAGSRRLRPFKH*PSLPNLPRRLP Trigger: AGGAAGGCGGCGAGGAAGGTTAGGGAGACTCGGGCAGTGTTTGAAGGGGCGAAGCCTCCGGGAGCCTGCGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000313433.11 |
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| CDS CCA 72 bp | ACGATTCTCCGCAAAGAGGCCGAGAAGGTGCGGGTCTaGGGGAATAGCGGAAAACCACAGAACGCGGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: TILRKEAEKVRV*GNSGKPQNAAA Trigger: GGCGGCCGCGTTCTGTGGTTTTCCGCTATTCCCCCAGACCCGCACCTTCTCGGCCTCTTTGCGGAGAATCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000373912.8 ENST00000444045.1 |
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| CDS GCA 72 bp | ACTGCGTGTAGCCGCCGGCTCCCCCGTATGAGGAGCTaGCATAGCTTTCGAATCCACGGATGCTACGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: TACSRRLPRMRS*HSFRIHGCYAC Trigger: ACAAGCGTAGCATCCGTGGATTCGAAAGCTATGGCAGCTCCTCATACGGGGGAGCCGGCGGCTACACGCAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373909.7 |
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| CDS CCA 72 bp | GCCCATGCTCCAGAAAACGCGTACTGCGCTCCCAGTTaGCTCCAAAAGCCTCCGCGGCCATCTTTACGAAGG | + |
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Preference number: 6 (lower is better) Translates to: AHAPENAYCAPS*LQKPPRPSLRR Trigger: CCTTCGTAAAGATGGCCGCGGAGGCTTTTGGAGCCAACTGGGAGCGCAGTACGCGTTTTCTGGAGCATGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373909.7 |
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| CDS GCA 72 bp | CGAATCCACGGATGCTACGCTTGTTCCTGTCTCCTCTaGCCATGCTCCAGAAAACGCGTACTGCGCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: RIHGCYACSCLL*PCSRKRVLRSQ Trigger: CTGGGAGCGCAGTACGCGTTTTCTGGAGCATGGGCAGAGGAGACAGGAACAAGCGTAGCATCCGTGGATTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373909.7 |
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| CDS CAA 72 bp | TGCCCATGCTCCAGAAAACGCGTACTGCGCTCCCAGTaGGCTCCAAAAGCCTCCGCGGCCATCTTTACGAAG | + |
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Preference number: 6 (lower is better) Translates to: CPCSRKRVLRSQ*APKASAAIFTK Trigger: CTTCGTAAAGATGGCCGCGGAGGCTTTTGGAGCCAACTGGGAGCGCAGTACGCGTTTTCTGGAGCATGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373909.7 |
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| CDS CCA 72 bp | TCCACCCCGCACCCCCATCATTACTGTTCCACATCTTaGTCACGATTCTCCGCAAAGAGGCCGAGAAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: STPHPHHYCSTS*SRFSAKRPRRC Trigger: GCACCTTCTCGGCCTCTTTGCGGAGAATCGTGACCAAGATGTGGAACAGTAATGATGGGGGTGCGGGGTGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000313433.11 |
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| CDS CCA 72 bp | TTTCGAATCCACCCCCATCATTACTGTTCCACATCTTaGTCACGATTCTCCGCAAAGAGGCCGAGAAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: FRIHPHHYCSTS*SRFSAKRPRRC Trigger: GCACCTTCTCGGCCTCTTTGCGGAGAATCGTGACCAAGATGTGGAACAGTAATGATGGGGGTGGATTCGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000444045.1 |
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