Pregenerated sensors for RHOXF1 (Homo sapiens)
Ensembl gene IDs: ENSG00000101883Ensembl transcript IDs: ENST00000217999.3
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCCTCTTTATTGATAACATAAGTGCAGAGGAGATAAGGGTAGCCTaGGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAAACCC | + |
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Preference number: 1 (lower is better) Translates to: CLFIDNISAEEIRVA*AAWAAQVSVAPEKP Trigger: GGGTTTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCACTTATGTTATCAATAAAGAGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| 3UTR TCA 72 bp | ATTGATAACATAAGTGCAGAGGAGATAAGGGTAGCCTaGGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCA | + |
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Preference number: 3 (lower is better) Translates to: IDNISAEEIRVA*AAWAAQVSVAP Trigger: TGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCACTTATGTTATCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | GGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAGCTGCGGACCCTCCATaGCCGCCTGGGCCGGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GDKGSLSGMGSPGVSGTRAADPP*PPGPAP Trigger: AGGAGCCGGCCCAGGCGGCCATGGAGGGTCCGCAGC...TCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | AGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCGGGGGCTGCGGCTGCTaGCGAGGCTCCTGGTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: RGDKGSLSGMGSPGVSGTGGCGC*RGSWFP Trigger: TGGAAACCAGGAGCCTCGGCAGCAGCCGCAGCCCCC...GGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | AGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCCCATGGCTGGAGCGCTaGGCCCCTGCACAAACTCCG | + |
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Preference number: 4 (lower is better) Translates to: RGDKGSLSGMGSPGVSGTPWLER*APAQTP Trigger: CGGAGTTTGTGCAGGGGCGCAGCGCTCCAGCCATGG...GGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | CATAAGTGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCGGCGGGGGCTGCGGCTaGTGCCGAGGCTCCTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: HKCRGDKGSLSGMGSPGVGGGCG*CRGSWF Trigger: AAACCAGGAGCCTCGGCAGCAGCCGCAGCCCCCGCC...GACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCACTTATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | TGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCCGCCGAGTTCGTGGCTaGATGTTCTCGGGCTGCGGA | + |
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Preference number: 4 (lower is better) Translates to: CRGDKGSLSGMGSPGVSGRRVRG*MFSGCG Trigger: TCCGCAGCCCGAGAACATGCAGCCACGAACTCGGCG...GCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | GGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGACGTGCGCCGAGTTCGTaGCTGCATGTTCTCGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GDKGSLSGMGSPGVSGTRRAPSS*LHVLGL Trigger: CAGCCCGAGAACATGCAGCCACGAACTCGGCGCACG...TCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR TCA 90 bp | TGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCCCACCTGCAACAGCGTaGACTTCGTGCGCCGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: CRGDKGSLSGMGSPGVSGPPATA*TSCAEF Trigger: GAACTCGGCGCACGAAGTTCACGCTGTTGCAGGTGG...GCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | GATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAAGGAGCGCTGCGCCCCTaGACAAACTCCGTGGCGTCT | + |
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Preference number: 4 (lower is better) Translates to: DKGSLSGMGSPGVSGTRKGALRP*TNSVAS Trigger: AGACGCCACGGAGTTTGTGCAGGGGCGCAGCGCTCC...TTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | GATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAACGCCCTCGGGGATCATaGCGCCATCGCGGTTCATGC | + |
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Preference number: 4 (lower is better) Translates to: DKGSLSGMGSPGVSGTRKRPRGS*RHRGSC Trigger: GCATGAACCGCGATGGCGGCATGATCCCCGAGGGCG...TTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | CATAAGTGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCTGCATGTTCTCGGGCTaGGGACCCTCCATGGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: HKCRGDKGSLSGMGSPGVCMFSG*GPSMAA Trigger: GGCGGCCATGGAGGGTCCGCAGCCCGAGAACATGCA...GACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCACTTATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR TCA 90 bp | CATAAGTGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCGAGATAAGGGTAGCCTaGGCGGCATGGGCAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: HKCRGDKGSLSGMGSPGVEIRVA*AAWAAQ Trigger: CTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTC...GACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCACTTATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | TGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCCGCCATCGCGGTTCATaGCGTTCTCGTGGTTCACAC | + |
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Preference number: 4 (lower is better) Translates to: CRGDKGSLSGMGSPGVSGRHRGS*RSRGSH Trigger: GTGTGAACCACGAGAACGGCATGAACCGCGATGGCG...GCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR TCA 90 bp | TGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCGATGCTGCCCCCAGCTaGGGTGTGGGGCTTATTTTT | + |
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Preference number: 4 (lower is better) Translates to: CRGDKGSLSGMGSPGVSGDAAPS*GVGLIF Trigger: AAAAATAAGCCCCACACCTCAGCTGGGGGCAGCATC...GCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR TCA 90 bp | AGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCGGTTCATATTACCCATaGGGCCTGGAGCTCCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: RGDKGSLSGMGSPGVSGTGSYYP*GLELLG Trigger: GCCAAGGAGCTCCAGGCCTCATGGGTAATATGAACC...GGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR GCA 90 bp | TGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCTCCAGCTCCTCCACCTaGAACAGCGTGAACTTCGTG | + |
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Preference number: 4 (lower is better) Translates to: CRGDKGSLSGMGSPGVSGSSSST*NSVNFV Trigger: CACGAAGTTCACGCTGTTGCAGGTGGAGGAGCTGGA...GCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | AGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCGCTCCTTGGCCAACATaGCCTTCTGCGCTTGATGCT | + |
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Preference number: 4 (lower is better) Translates to: RGDKGSLSGMGSPGVSGTAPWPT*PSALDA Trigger: AGCATCAAGCGCAGAAGGCCATGTTGGCCAAGGAGC...GGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | CATAAGTGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGGCCTGGAGCTCCTTaGCCAACATGGCCTTCTGCG | + |
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Preference number: 4 (lower is better) Translates to: HKCRGDKGSLSGMGSPGVRPGAP*PTWPSA Trigger: CGCAGAAGGCCATGTTGGCCAAGGAGCTCCAGGCCT...GACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCACTTATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | GGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGACCCCCAGCTGAGGTGTaGGGCTTATTTTTACCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GDKGSLSGMGSPGVSGTRPPAEV*GLFLPG Trigger: ACCAGGTAAAAATAAGCCCCACACCTCAGCTGGGGG...TCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | GATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAATTCATGCCGTTCTCGTaGTTCACACCGCCCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: DKGSLSGMGSPGVSGTRKFMPFS*FTPPSG Trigger: CCCTGAGGGCGGTGTGAACCACGAGAACGGCATGAA...TTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | AGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCCAGCCCAGGTGTCAGTaGCACCAGAAAAACCCATCT | + |
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Preference number: 4 (lower is better) Translates to: RGDKGSLSGMGSPGVSGTQPRCQ*HQKNPS Trigger: AGATGGGTTTTTCTGGTGCCACTGACACCTGGGCTG...GGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR TCA 90 bp | GGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAGGCACATCAGGGTATTaGGTGTGTCGGAAAACACTT | + |
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Preference number: 4 (lower is better) Translates to: GDKGSLSGMGSPGVSGTRGTSGY*VCRKTL Trigger: AAGTGTTTTCCGACACACTCAATACCCTGATGTGCC...TCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | GATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAAATTACCCATGAGGCCTaGAGCTCCTTGGCCAACATG | + |
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Preference number: 4 (lower is better) Translates to: DKGSLSGMGSPGVSGTRKITHEA*SSLANM Trigger: CATGTTGGCCAAGGAGCTCCAGGCCTCATGGGTAAT...TTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | GATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAAGCTCCTGAAGAAGGATaGCATTCTAGGGCTAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: DKGSLSGMGSPGVSGTRKAPEEG*HSRASP Trigger: TGGACTAGCCCTAGAATGCCATCCTTCTTCAGGAGC...TTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR TCA 90 bp | GATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAAAGCATTAATTCTCTCTaGTGTCGCCTACATCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: DKGSLSGMGSPGVSGTRKSINSL*CRLHLA Trigger: GGCCAGATGTAGGCGACATCAGAGAGAATTAATGCT...TTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | CATAAGTGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCCAAGTTCCCTTCTTGTaGGCACATCAGGGTATTGAG | + |
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Preference number: 4 (lower is better) Translates to: HKCRGDKGSLSGMGSPGVQVPFL*AHQGIE Trigger: CTCAATACCCTGATGTGCCCACAAGAAGGGAACTTG...GACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCACTTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CCA 90 bp | TGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCCAGCACGTAGTTCATTaGCGAGCATTAATTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: CRGDKGSLSGMGSPGVSGQHVVH*RALILS Trigger: AGAGAGAATTAATGCTCGCCAATGAACTACGTGCTG...GCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS GCA 90 bp | AGCGTGAACTTCGTGCGCCGAGTTCGTGGCTGCATGTTCTCGGGCTaGGGACCCTCCATGGCCGCCTGGGCCGGCTCCTCCGGCGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: SVNFVRRVRGCMFSG*GPSMAAWAGSSGGG Trigger: GCCCCCGCCGGAGGAGCCGGCCCAGGCGGCCATGGAGGGTCCGCAGCCCGAGAACATGCAGCCACGAACTCGGCGCACGAAGTTCACGCT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS GCA 90 bp | TCCTCCACCTGCAACAGCGTGAACTTCGTGCGCCGAGTTCGTGGCTaGATGTTCTCGGGCTGCGGACCCTCCATGGCCGCCTGGGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: SSTCNSVNFVRRVRG*MFSGCGPSMAAWAG Trigger: GCCGGCCCAGGCGGCCATGGAGGGTCCGCAGCCCGAGAACATGCAGCCACGAACTCGGCGCACGAAGTTCACGCTGTTGCAGGTGGAGGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 90 bp | CAGCTCCTCCACCTGCAACAGCGTGAACTTCGTGCGCCGAGTTCGTaGCTGCATGTTCTCGGGCTGCGGACCCTCCATGGCCGCCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: QLLHLQQRELRAPSS*LHVLGLRTLHGRLG Trigger: GCCCAGGCGGCCATGGAGGGTCCGCAGCCCGAGAACATGCAGCCACGAACTCGGCGCACGAAGTTCACGCTGTTGCAGGTGGAGGAGCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CAA 90 bp | AGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCCATGGCCTTCTGCGCTaGATGCTGCCCCCAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: RGDKGSLSGMGSPGVSGTHGLLR*MLPPAE Trigger: CTCAGCTGGGGGCAGCATCAAGCGCAGAAGGCCATG...GGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS GCA 90 bp | GGTTTCCACCGCCGCCCTCGGGGATCATGCCGCCATCGCGGTTCATaGCGTTCTCGTGGTTCACACCGCCCTCAGGGTTCATATTACCCA | + |
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Preference number: 5 (lower is better) Translates to: GFHRRPRGSCRHRGS*RSRGSHRPQGSYYP Trigger: TGGGTAATATGAACCCTGAGGGCGGTGTGAACCACGAGAACGGCATGAACCGCGATGGCGGCATGATCCCCGAGGGCGGCGGTGGAAACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 90 bp | CCGCCCTCGGGGATCATGCCGCCATCGCGGTTCATGCCGTTCTCGTaGTTCACACCGCCCTCAGGGTTCATATTACCCATGAGGCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: PPSGIMPPSRFMPFS*FTPPSGFILPMRPG Trigger: TCCAGGCCTCATGGGTAATATGAACCCTGAGGGCGGTGTGAACCACGAGAACGGCATGAACCGCGATGGCGGCATGATCCCCGAGGGCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS TCA 90 bp | GAGTGTGTCGGAAAACACTTTCCAGCTCCTCCACCTGCAACAGCGTaGACTTCGTGCGCCGAGTTCGTGGCTGCATGTTCTCGGGCTGCG | + |
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Preference number: 5 (lower is better) Translates to: ECVGKHFPAPPPATA*TSCAEFVAACSRAA Trigger: CGCAGCCCGAGAACATGCAGCCACGAACTCGGCGCACGAAGTTCACGCTGTTGCAGGTGGAGGAGCTGGAAAGTGTTTTCCGACACACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS TCA 90 bp | TGCCGTTCTCGTGGTTCACACCGCCCTCAGGGTTCATATTACCCATaGGGCCTGGAGCTCCTTGGCCAACATGGCCTTCTGCGCTTGATG | + |
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Preference number: 5 (lower is better) Translates to: CRSRGSHRPQGSYYP*GLELLGQHGLLRLM Trigger: CATCAAGCGCAGAAGGCCATGTTGGCCAAGGAGCTCCAGGCCTCATGGGTAATATGAACCCTGAGGGCGGTGTGAACCACGAGAACGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CAA 90 bp | TGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCGGGCACATCAGGGTATaGAGTGTGTCGGAAAACACT | + |
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Preference number: 5 (lower is better) Translates to: CRGDKGSLSGMGSPGVSGGHIRV*SVSENT Trigger: AGTGTTTTCCGACACACTCAATACCCTGATGTGCCC...GCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CAA 90 bp | GATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAACGGCAAGTTCCCTTCTaGTGGGCACATCAGGGTATT | + |
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Preference number: 5 (lower is better) Translates to: DKGSLSGMGSPGVSGTRKRQVPF*WAHQGI Trigger: AATACCCTGATGTGCCCACAAGAAGGGAACTTGCCG...TTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CAA 90 bp | TGCAGAGGAGATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCAACCAAACCCGCACTTaGTCTTCAGTCACACCTAAG | + |
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Preference number: 5 (lower is better) Translates to: CRGDKGSLSGMGSPGVSGNQTRT*SSVTPK Trigger: CTTAGGTGTGACTGAAGACAAAGTGCGGGTTTGGTT...GCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATCTCCTCTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 90 bp | GGCCAACATGGCCTTCTGCGCTTGATGCTGCCCCCAGCTGAGGTGTaGGGCTTATTTTTACCTGGTATACACTCAGGCAGTAGAACACGG | + |
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Preference number: 5 (lower is better) Translates to: GQHGLLRLMLPPAEV*GLFLPGIHSGSRTR Trigger: CCGTGTTCTACTGCCTGAGTGTATACCAGGTAAAAATAAGCCCCACACCTCAGCTGGGGGCAGCATCAAGCGCAGAAGGCCATGTTGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS-3UTR CAA 90 bp | GATAAGGGTAGCCTGAGCGGCATGGGCAGCCCAGGTGTCAGTGGCACCAGAAAATCAGCACGTAGTTCATaGGCGAGCATTAATTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: DKGSLSGMGSPGVSGTRKSARSS*ASINSL Trigger: GAGAGAATTAATGCTCGCCAATGAACTACGTGCTGA...TTTTCTGGTGCCACTGACACCTGGGCTGCCCATGCCGCTCAGGCTACCCTTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 90 bp | CCACGACGATGTAGACACAGTCGTCTGGGTCAGCACGTAGTTCATTaGCGAGCATTAATTCTCTCTGATGTCGCCTACATCTGGCCCTTT | + |
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Preference number: 5 (lower is better) Translates to: PRRCRHSRLGQHVVH*RALILSDVAYIWPF Trigger: AAAGGGCCAGATGTAGGCGACATCAGAGAGAATTAATGCTCGCCAATGAACTACGTGCTGACCCAGACGACTGTGTCTACATCGTCGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 72 bp | TTCGTGGCTGCATGTTCTCGGGCTGCGGACCCTCCATaGCCGCCTGGGCCGGCTCCTCCGGCGGGGGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: FVAACSRAADPP*PPGPAPPAGAA Trigger: CGCAGCCCCCGCCGGAGGAGCCGGCCCAGGCGGCCATGGAGGGTCCGCAGCCCGAGAACATGCAGCCACGAA 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS GCA 72 bp | TTCGTGCGCCGAGTTCGTGGCTGCATGTTCTCGGGCTaGGGACCCTCCATGGCCGCCTGGGCCGGCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: FVRRVRGCMFSG*GPSMAAWAGSS Trigger: GGAGGAGCCGGCCCAGGCGGCCATGGAGGGTCCGCAGCCCGAGAACATGCAGCCACGAACTCGGCGCACGAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS GCA 72 bp | CGCCGCCCTCGGGGATCATGCCGCCATCGCGGTTCATaGCGTTCTCGTGGTTCACACCGCCCTCAGGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: RRPRGSCRHRGS*RSRGSHRPQGS Trigger: TGAACCCTGAGGGCGGTGTGAACCACGAGAACGGCATGAACCGCGATGGCGGCATGATCCCCGAGGGCGGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS GCA 72 bp | GAGGCTCCTGGTTTCCACCGCCGCCCTCGGGGATCATaGCGCCATCGCGGTTCATGCCGTTCTCGTGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: EAPGFHRRPRGS*RHRGSCRSRGS Trigger: TGAACCACGAGAACGGCATGAACCGCGATGGCGGCATGATCCCCGAGGGCGGCGGTGGAAACCAGGAGCCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS GCA 72 bp | TGCAACAGCGTGAACTTCGTGCGCCGAGTTCGTGGCTaGATGTTCTCGGGCTGCGGACCCTCCATGGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: CNSVNFVRRVRG*MFSGCGPSMAA Trigger: GGCGGCCATGGAGGGTCCGCAGCCCGAGAACATGCAGCCACGAACTCGGCGCACGAAGTTCACGCTGTTGCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 72 bp | CACCTGCAACAGCGTGAACTTCGTGCGCCGAGTTCGTaGCTGCATGTTCTCGGGCTGCGGACCCTCCATGGC | + |
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Preference number: 6 (lower is better) Translates to: HLQQRELRAPSS*LHVLGLRTLHG Trigger: GCCATGGAGGGTCCGCAGCCCGAGAACATGCAGCCACGAACTCGGCGCACGAAGTTCACGCTGTTGCAGGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CAA 72 bp | GGCCTGGAGCTCCTTGGCCAACATGGCCTTCTGCGCTaGATGCTGCCCCCAGCTGAGGTGTGGGGCTTATTT | + |
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Preference number: 6 (lower is better) Translates to: GLELLGQHGLLR*MLPPAEVWGLF Trigger: AAATAAGCCCCACACCTCAGCTGGGGGCAGCATCAAGCGCAGAAGGCCATGTTGGCCAAGGAGCTCCAGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS TCA 72 bp | GCCTGGAGCTCCTTGGCCAACATGGCCTTCTGCGCTTaGTGCTGCCCCCAGCTGAGGTGTGGGGCTTATTTT | + |
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Preference number: 6 (lower is better) Translates to: AWSSLANMAFCA*CCPQLRCGAYF Trigger: AAAATAAGCCCCACACCTCAGCTGGGGGCAGCATCAAGCGCAGAAGGCCATGTTGGCCAAGGAGCTCCAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS TCA 72 bp | CGTGGTTCACACCGCCCTCAGGGTTCATATTACCCATaGGGCCTGGAGCTCCTTGGCCAACATGGCCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: RGSHRPQGSYYP*GLELLGQHGLL Trigger: CAGAAGGCCATGTTGGCCAAGGAGCTCCAGGCCTCATGGGTAATATGAACCCTGAGGGCGGTGTGAACCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 72 bp | GGGATCATGCCGCCATCGCGGTTCATGCCGTTCTCGTaGTTCACACCGCCCTCAGGGTTCATATTACCCATG | + |
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Preference number: 6 (lower is better) Translates to: GIMPPSRFMPFS*FTPPSGFILPM Trigger: CATGGGTAATATGAACCCTGAGGGCGGTGTGAACCACGAGAACGGCATGAACCGCGATGGCGGCATGATCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS TCA 72 bp | TCGGCAAGTTCCCTTCTTGTGGGCACATCAGGGTATTaGGTGTGTCGGAAAACACTTTCCAGCTCCTCCACC | + |
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Preference number: 6 (lower is better) Translates to: SASSLLVGTSGY*VCRKTLSSSST Trigger: GGTGGAGGAGCTGGAAAGTGTTTTCCGACACACTCAATACCCTGATGTGCCCACAAGAAGGGAACTTGCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CAA 72 bp | TTCGGCAAGTTCCCTTCTTGTGGGCACATCAGGGTATaGAGTGTGTCGGAAAACACTTTCCAGCTCCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: FGKFPSCGHIRV*SVSENTFQLLH Trigger: GTGGAGGAGCTGGAAAGTGTTTTCCGACACACTCAATACCCTGATGTGCCCACAAGAAGGGAACTTGCCGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 72 bp | TGTAGACACAGTCGTCTGGGTCAGCACGTAGTTCATTaGCGAGCATTAATTCTCTCTGATGTCGCCTACATC | + |
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Preference number: 6 (lower is better) Translates to: CRHSRLGQHVVH*RALILSDVAYI Trigger: GATGTAGGCGACATCAGAGAGAATTAATGCTCGCCAATGAACTACGTGCTGACCCAGACGACTGTGTCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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| CDS CCA 72 bp | GAAAAACCCATCTCCAAACTAGCTCCTGAAGAAGGATaGCATTCTAGGGCTAGTCCACGACGATGTAGACAC | + |
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Preference number: 6 (lower is better) Translates to: EKPISKLAPEEG*HSRASPRRCRH Trigger: GTGTCTACATCGTCGTGGACTAGCCCTAGAATGCCATCCTTCTTCAGGAGCTAGTTTGGAGATGGGTTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000217999.3 |
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