Pregenerated sensors for RFPL2 (Homo sapiens)
Ensembl gene IDs: ENSG00000128253Ensembl transcript IDs: ENST00000248983.8, ENST00000400237.2, ENST00000626996.2, ENST00000628378.1, ENST00000652607.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCATCCGGGCAGACAAAGCCAGAAAAGCCTGGGCATGGAGCAGATaGGCTGGCAGACGCAGAAGTGCCTGGAATGGCAAGAACCCCTCC | + |
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Preference number: 5 (lower is better) Translates to: GIRADKARKAWAWSR*AGRRRSAWNGKNPS Trigger: GGAGGGGTTCTTGCCATTCCAGGCACTTCTGCGTCTGCCAGCCCATCTGCTCCATGCCCAGGCTTTTCTGGCTTTGTCTGCCCGGATGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652607.1 |
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| CDS CCA 90 bp | CTGCAAAGTCCCAGTGGCCACACAATACAGCACATAGACAGATCCTaGATTGGGACACTGCAGTCTCTGGGAAGCCTAATTCAGCCACCT | + |
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Preference number: 5 (lower is better) Translates to: LQSPSGHTIQHIDRS*IGTLQSLGSLIQPP Trigger: AGGTGGCTGAATTAGGCTTCCCAGAGACTGCAGTGTCCCAATCCAGGATCTGTCTATGTGCTGTATTGTGTGGCCACTGGGACTTTGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000248983.8 ENST00000400237.2 ENST00000626996.2 ENST00000628378.1 ENST00000652607.1 |
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| CDS CCA 90 bp | AAGTCCCAGTGGCCACACAATACAGCACATAGACAGATCCTGGATTaGGACACTGCAGTCTCTGGGAAGCCTAATTCAGCCACCTCCATC | + |
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Preference number: 5 (lower is better) Translates to: KSQWPHNTAHRQILD*DTAVSGKPNSATSI Trigger: GATGGAGGTGGCTGAATTAGGCTTCCCAGAGACTGCAGTGTCCCAATCCAGGATCTGTCTATGTGCTGTATTGTGTGGCCACTGGGACTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000400237.2 ENST00000626996.2 ENST00000628378.1 ENST00000652607.1 |
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| CDS CCA 90 bp | ATGAGGCTCAGGCTCCTTATCACCATCATGTCTGCAAAGTCCCAGTaGCCACACAATACAGCACATAGACAGATCCTGGATTGGGACACT | + |
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Preference number: 5 (lower is better) Translates to: MRLRLLITIMSAKSQ*PHNTAHRQILDWDT Trigger: AGTGTCCCAATCCAGGATCTGTCTATGTGCTGTATTGTGTGGCCACTGGGACTTTGCAGACATGATGGTGATAAGGAGCCTGAGCCTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000248983.8 ENST00000400237.2 ENST00000652607.1 |
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| CDS CCA 90 bp | TGTCCACTCAGGCTCCTTATCACCATCATGTCTGCAAAGTCCCAGTaGCCACACAATACAGCACATAGACAGATCCTGGATTGGGACACT | + |
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Preference number: 5 (lower is better) Translates to: CPLRLLITIMSAKSQ*PHNTAHRQILDWDT Trigger: AGTGTCCCAATCCAGGATCTGTCTATGTGCTGTATTGTGTGGCCACTGGGACTTTGCAGACATGATGGTGATAAGGAGCCTGAGTGGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626996.2 |
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| CDS CCA 90 bp | TCAGGTCTCAGGCTCCTTATCACCATCATGTCTGCAAAGTCCCAGTaGCCACACAATACAGCACATAGACAGATCCTGGATTGGGACACT | + |
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Preference number: 5 (lower is better) Translates to: SGLRLLITIMSAKSQ*PHNTAHRQILDWDT Trigger: AGTGTCCCAATCCAGGATCTGTCTATGTGCTGTATTGTGTGGCCACTGGGACTTTGCAGACATGATGGTGATAAGGAGCCTGAGACCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628378.1 |
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| CDS CCA 72 bp | GCCCCAAATCAGCCCCCAGCCTCGGGCAGTGACGCCTaGAGTAGGTCACCCAACCCAACTCCTGCGCGGGCA | + |
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Preference number: 6 (lower is better) Translates to: APNQPPASGSDA*SRSPNPTPARA Trigger: TGCCCGCGCAGGAGTTGGGTTGGGTGACCTACTCCAGGCGTCACTGCCCGAGGCTGGGGGCTGATTTGGGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400237.2 |
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| CDS CCA 72 bp | CTCCAGCCCGTGGCATGTAGCTCCTTCTCAGGGCACTaGGCATCCGGGCAGACAAAGCCAGAAAAGCACCCA | + |
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Preference number: 6 (lower is better) Translates to: LQPVACSSFSGH*ASGQTKPEKHP Trigger: TGGGTGCTTTTCTGGCTTTGTCTGCCCGGATGCCCAGTGCCCTGAGAAGGAGCTACATGCCACGGGCTGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400237.2 |
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| CDS CCA 72 bp | GCAGACAAAGCCAGAAAAGCCTGGGCATGGAGCAGATaGGCTGGCAGACGCAGAAGTGCCTGGAATGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: ADKARKAWAWSR*AGRRRSAWNGK Trigger: CTTGCCATTCCAGGCACTTCTGCGTCTGCCAGCCCATCTGCTCCATGCCCAGGCTTTTCTGGCTTTGTCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652607.1 |
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| CDS CCA 72 bp | TGGCCACACAATACAGCACATAGACAGATCCTGGATTaGGACACTGCAGTCTCTGGGAAGCCTAATTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: WPHNTAHRQILD*DTAVSGKPNSA Trigger: GGCTGAATTAGGCTTCCCAGAGACTGCAGTGTCCCAATCCAGGATCTGTCTATGTGCTGTATTGTGTGGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000248983.8 ENST00000400237.2 ENST00000626996.2 ENST00000628378.1 ENST00000652607.1 |
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| CDS CCA 72 bp | CCCAGTGGCCACACAATACAGCACATAGACAGATCCTaGATTGGGACACTGCAGTCTCTGGGAAGCCTAATT | + |
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Preference number: 6 (lower is better) Translates to: PSGHTIQHIDRS*IGTLQSLGSLI Trigger: AATTAGGCTTCCCAGAGACTGCAGTGTCCCAATCCAGGATCTGTCTATGTGCTGTATTGTGTGGCCACTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000248983.8 ENST00000400237.2 ENST00000626996.2 ENST00000628378.1 ENST00000652607.1 |
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| CDS CCA 72 bp | AGGCTCCTTATCACCATCATGTCTGCAAAGTCCCAGTaGCCACACAATACAGCACATAGACAGATCCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: RLLITIMSAKSQ*PHNTAHRQILD Trigger: ATCCAGGATCTGTCTATGTGCTGTATTGTGTGGCCACTGGGACTTTGCAGACATGATGGTGATAAGGAGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000248983.8 ENST00000400237.2 ENST00000626996.2 ENST00000628378.1 ENST00000652607.1 |
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| CDS CCA 72 bp | GTCTACTCTGATTGTGCTTTATTTTCACGTTCTGACTaGATGACAGCAAGTCTTAGGATAACCAATCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: VYSDCALFSRSD*MTASLRITNQN Trigger: GTTCTGATTGGTTATCCTAAGACTTGCTGTCATCCAGTCAGAACGTGAAAATAAAGCACAATCAGAGTAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652607.1 |
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