Pregenerated sensors for REG1A (Homo sapiens)
Ensembl gene IDs: ENSG00000115386Ensembl transcript IDs: ENST00000233735.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGTTGAGTGTCCGGTTTAATTTTTaGCTCCGTTGTAATTGCTGG | + |
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Preference number: 2 (lower is better) Translates to: LLKINKANSAEKRVSRLSVRFNF*LRCNCW Trigger: CCAGCAATTACAACGGAGTCAAAAATTAAACCGGAC...ACTCAACCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| 3UTR-3UTR CCA 90 bp | CTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGTTGAGTCTCCGTTGTAATTGCTaGATCAGTTCTAGACATGTA | + |
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Preference number: 2 (lower is better) Translates to: LLKINKANSAEKRVSRLSLRCNC*ISSRHV Trigger: TACATGTCTAGAACTGATCCAGCAATTACAACGGAG...ACTCAACCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR TCA 90 bp | CTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGTTGAGTGTGTCCAGGTTGAGTTaGGTTGGAGAGATGGTCCGG | + |
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Preference number: 4 (lower is better) Translates to: LLKINKANSAEKRVSRLSVSRLS*VGEMVR Trigger: CCGGACCATCTCTCCAACTCAACTCAACCTGGACAC...ACTCAACCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR TCA 90 bp | CTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGTTGAGTCTGGAATCCTGTGCTTaGGGTCAGGCTCACACAGTA | + |
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Preference number: 4 (lower is better) Translates to: LLKINKANSAEKRVSRLSLESCA*GQAHTV Trigger: TACTGTGTGAGCCTGACCTCAAGCACAGGATTCCAG...ACTCAACCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CCA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGAGGATTAACACTGCTTaGGGCTCCAATGCCCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: VKLLKINKANSAEKRVSRRINTA*GSNAPG Trigger: TCCTGGGGCATTGGAGCCCCAAGCAGTGTTAATCCT...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR TCA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGAGAGAGTGTCCAGGTTaGGTTGAGTTGGAGAGATGG | + |
|
Preference number: 4 (lower is better) Translates to: VKLLKINKANSAEKRVSRRECPG*VELERW Trigger: CCATCTCTCCAACTCAACTCAACCTGGACACTCTCT...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR GCA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGCTGGCAATAGAGATCTaGATCAACCCAGGTCTCACG | + |
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Preference number: 4 (lower is better) Translates to: VKLLKINKANSAEKRVSRLAIEI*INPGLT Trigger: CGTGAGACCTGGGTTGATGCAGATCTCTATTGCCAG...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CCA 90 bp | CTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGTTGAGTACATCCTTCCATTTCTaGAATCCTGTGCTTGAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: LLKINKANSAEKRVSRLSTSFHF*NPVLEV Trigger: GACCTCAAGCACAGGATTCCAGAAATGGAAGGATGT...ACTCAACCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR TCA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGGTCCGGTTTAATTTTTaGCTCCGTTGTAATTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VKLLKINKANSAEKRVSRVRFNF*LRCNCW Trigger: CCAGCAATTACAACGGAGTCAAAAATTAAACCGGAC...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CCA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGATCAACAATCTCTGTTaGCTGAGTCTGAGTTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: VKLLKINKANSAEKRVSRINNLC*LSLSWL Trigger: AAGCCAACTCAGACTCAGCCAACAGAGATTGTTGAT...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CCA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGCTCCGTTGTAATTGCTaGATCAGTTCTAGACATGTA | + |
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Preference number: 4 (lower is better) Translates to: VKLLKINKANSAEKRVSRLRCNC*ISSRHV Trigger: TACATGTCTAGAACTGATCCAGCAATTACAACGGAG...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CAA 90 bp | CTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGTTGAGTCTCTGTCTGGGCCTCTaGGCCTTGGCTCTGAGACAG | + |
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Preference number: 5 (lower is better) Translates to: LLKINKANSAEKRVSRLSLCLGL*ALALRQ Trigger: CTGTCTCAGAGCCAAGGCCAAGAGGCCCAGACAGAG...ACTCAACCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CAA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGCAGCGGCGGTTCTTTTaGGGGTCATGGAGGCCAATC | + |
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Preference number: 5 (lower is better) Translates to: VKLLKINKANSAEKRVSRQRRFF*GSWRPI Trigger: GATTGGCCTCCATGACCCCAAAAAGAACCGCCGCTG...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CAA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGCTGGGCCTCTTGGCCTaGGCTCTGAGACAGAAACAT | + |
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Preference number: 5 (lower is better) Translates to: VKLLKINKANSAEKRVSRLGLLA*ALRQKH Trigger: ATGTTTCTGTCTCAGAGCCAAGGCCAAGAGGCCCAG...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CAA 90 bp | CTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGTTGAGTTCTGGAATCCTGTGCTaGAGGTCAGGCTCACACAGT | + |
|
Preference number: 5 (lower is better) Translates to: LLKINKANSAEKRVSRLSSGILC*RSGSHS Trigger: ACTGTGTGAGCCTGACCTCAAGCACAGGATTCCAGA...ACTCAACCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CAA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGAGTGTCCAGGTTGAGTaGAGTTGGAGAGATGGTCCG | + |
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Preference number: 5 (lower is better) Translates to: VKLLKINKANSAEKRVSRSVQVE*SWRDGP Trigger: CGGACCATCTCTCCAACTCAACTCAACCTGGACACT...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CAA 90 bp | CTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGTTGAGTCAGACAAAGGAGAACTaGTCTTCACAAGGCACATCC | + |
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Preference number: 5 (lower is better) Translates to: LLKINKANSAEKRVSRLSQTKEN*SSQGTS Trigger: GGATGTGCCTTGTGAAGACAAGTTCTCCTTTGTCTG...ACTCAACCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CAA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGAATCAACAATCTCTGTaGGCTGAGTCTGAGTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: VKLLKINKANSAEKRVSRNQQSL*AESELA Trigger: AGCCAACTCAGACTCAGCCAACAGAGATTGTTGATT...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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| CDS-3UTR CAA 90 bp | GTAAAACTATTGAAGATTAACAAGGCAAACTCAGCAGAGAAGAGAGTGTCCAGGGCTGCAATGAATCTCTaGCTTAAGAGGCAAATCAAC | + |
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Preference number: 5 (lower is better) Translates to: VKLLKINKANSAEKRVSRAAMNL*LKRQIN Trigger: GTTGATTTGCCTCTTAAGCAAGAGATTCATTGCAGC...CCTGGACACTCTCTTCTCTGCTGAGTTTGCCTTGTTAATCTTCAATAGTTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233735.2 |
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