Pregenerated sensors for RANBP3-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000266983Ensembl transcript IDs: ENST00000587836.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCTAAGGCAGGAGCCAGCAAACCTTTCCTGGAGGAAGGCCTCGGCTaGGGCGCCCTGAACTGCTCACTGTCCCACCGCGGGGGAACCCCG | + |
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Preference number: 5 (lower is better) Translates to: SKAGASKPFLEEGLG*GALNCSLSHRGGTP Trigger: CGGGGTTCCCCCGCGGTGGGACAGTGAGCAGTTCAGGGCGCCGCAGCCGAGGCCTTCCTCCAGGAAAGGTTTGCTGGCTCCTGCCTTAGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS GCA 90 bp | TCTTTCTCTGCTGCCAGGCTTGAGACATCTCCAGGATCCTGCAGATaGTCACATGGGCAAACCTGGCTCCGTCTCCACCCTCAGGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: SFSAARLETSPGSCR*SHGQTWLRLHPQGE Trigger: CTCTCCCTGAGGGTGGAGACGGAGCCAGGTTTGCCCATGTGAGCATCTGCAGGATCCTGGAGATGTCTCAAGCCTGGCAGCAGAGAAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS CCA 90 bp | CTTGAGACATCTCCAGGATCCTGCAGATGCTCACATGGGCAAACCTaGCTCCGTCTCCACCCTCAGGGAGAGCATAGTCTTTGGATCCAG | + |
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Preference number: 5 (lower is better) Translates to: LETSPGSCRCSHGQT*LRLHPQGEHSLWIQ Trigger: CTGGATCCAAAGACTATGCTCTCCCTGAGGGTGGAGACGGAGCCAGGTTTGCCCATGTGAGCATCTGCAGGATCCTGGAGATGTCTCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS TCA 90 bp | CCTTCCAGCTCACCGCCCGCAAAATCTGGCCTCACAGTTTTAGCCTaGAAATCCGCATCGTCATTTGGCTCCTTGAGATGTGGTGTCACT | + |
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Preference number: 5 (lower is better) Translates to: PSSSPPAKSGLTVLA*KSASSFGSLRCGVT Trigger: AGTGACACCACATCTCAAGGAGCCAAATGACGATGCGGATTTTCAGGCTAAAACTGTGAGGCCAGATTTTGCGGGCGGTGAGCTGGAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS GCA 90 bp | GTGGATGGAGTCTTATACTCTAACCTCTCAGGACTCCTAGTCCAGTaGTCCTTCCAGCTCACCGCCCGCAAAATCTGGCCTCACAGTTTT | + |
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Preference number: 5 (lower is better) Translates to: VDGVLYSNLSGLLVQ*SFQLTARKIWPHSF Trigger: AAAACTGTGAGGCCAGATTTTGCGGGCGGTGAGCTGGAAGGAGCACTGGACTAGGAGTCCTGAGAGGTTAGAGTATAAGACTCCATCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS CCA 90 bp | AGCATAGTCTTTGGATCCAGTGGCTGGAAAGCCCTGGTTATTTTCTaGAAGATCCTCTTCTCCATCCATCACAAACTTTCTCATCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: SIVFGSSGWKALVIF*KILFSIHHKLSHLL Trigger: TAGAAGATGAGAAAGTTTGTGATGGATGGAGAAGAGGATCTTCCAGAAAATAACCAGGGCTTTCCAGCCACTGGATCCAAAGACTATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS TCA 72 bp | AACCTTTCCTGGAGGAAGGCCTCGGCTGCGGCGCCCTaGACTGCTCACTGTCCCACCGCGGGGGAACCCCGG | + |
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Preference number: 6 (lower is better) Translates to: NLSWRKASAAAP*TAHCPTAGEPR Trigger: CCGGGGTTCCCCCGCGGTGGGACAGTGAGCAGTTCAGGGCGCCGCAGCCGAGGCCTTCCTCCAGGAAAGGTT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS GCA 72 bp | GCTGCCAGGCTTGAGACATCTCCAGGATCCTGCAGATaGTCACATGGGCAAACCTGGCTCCGTCTCCACCCT | + |
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Preference number: 6 (lower is better) Translates to: AARLETSPGSCR*SHGQTWLRLHP Trigger: AGGGTGGAGACGGAGCCAGGTTTGCCCATGTGAGCATCTGCAGGATCCTGGAGATGTCTCAAGCCTGGCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS CCA 72 bp | TCTCCAGGATCCTGCAGATGCTCACATGGGCAAACCTaGCTCCGTCTCCACCCTCAGGGAGAGCATAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: SPGSCRCSHGQT*LRLHPQGEHSL Trigger: AAGACTATGCTCTCCCTGAGGGTGGAGACGGAGCCAGGTTTGCCCATGTGAGCATCTGCAGGATCCTGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS GCA 72 bp | GTCTTATACTCTAACCTCTCAGGACTCCTAGTCCAGTaGTCCTTCCAGCTCACCGCCCGCAAAATCTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: VLYSNLSGLLVQ*SFQLTARKIWP Trigger: AGGCCAGATTTTGCGGGCGGTGAGCTGGAAGGAGCACTGGACTAGGAGTCCTGAGAGGTTAGAGTATAAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS CCA 72 bp | CCTCACAGTTTTAGCCTGAAAATCCGCATCGTCATTTaGCTCCTTGAGATGTGGTGTCACTGGCCTTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: PHSFSLKIRIVI*LLEMWCHWPWL Trigger: GAGCCAAGGCCAGTGACACCACATCTCAAGGAGCCAAATGACGATGCGGATTTTCAGGCTAAAACTGTGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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| CDS TCA 72 bp | TCACCGCCCGCAAAATCTGGCCTCACAGTTTTAGCCTaGAAATCCGCATCGTCATTTGGCTCCTTGAGATGT | + |
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Preference number: 6 (lower is better) Translates to: SPPAKSGLTVLA*KSASSFGSLRC Trigger: ACATCTCAAGGAGCCAAATGACGATGCGGATTTTCAGGCTAAAACTGTGAGGCCAGATTTTGCGGGCGGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587836.1 |
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