Pregenerated sensors for RAMAC (Homo sapiens)

Ensembl gene IDs: ENSG00000169612

Ensembl transcript IDs: ENST00000304191.4

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	TATAGCATCACTATTTATAGGAGAGAAAGCAGCAGAGGTATGCATCTGGAAGTGCTTATGTGTGAATTTTaGCCTGCTATGTTGTTAGCA	+
Preference number: 2 (lower is better) Translates to: YSITIYRRESSRGMHLEVLMCEF*PAMLLA Trigger: TGCTAACAACATAGCAGGTCAAAATTCACACATAAG...CACTTCCAGATGCATACCTCTGCTGCTTTCTCTCCTATAAATAGTGATGCTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304191.4
CDS-3UTR GCA 90 bp	TATAGCATCACTATTTATAGGAGAGAAAGCAGCAGAGGTATGCATCTGGAAGTGAACTGTCTGTTGTCTTaGAACCGATTGCCTCTGTTT	+
Preference number: 4 (lower is better) Translates to: YSITIYRRESSRGMHLEVNCLLS*NRLPLF Trigger: AAACAGAGGCAATCGGTTGCAAGACAACAGACAGTT...CACTTCCAGATGCATACCTCTGCTGCTTTCTCTCCTATAAATAGTGATGCTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000304191.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu