Pregenerated sensors for RAET1G (Homo sapiens)
Ensembl gene IDs: ENSG00000203722Ensembl transcript IDs: ENST00000367360.7, ENST00000367361.6, ENST00000479265.1
Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TCACGTGTCCACCAGACAAGGGGCGCTTCGCTATTTGGTAGCTGTCACTCCAAATCCTGGCCTGCAGGGTaGGGGGTTCCTTGGGTATGT | + |
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Preference number: 4 (lower is better) Translates to: SRVHQTRGASLFGSCHSKSWPAG*GVPWVC Trigger: ACATACCCAAGGAACCCCTCACCCTGCAGGCCAGGA...TTTGGAGTGACAGCTACCAAATAGCGAAGCGCCCCTTGTCTGGTGGACACGTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000367361.6 |
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| CDS-3UTR GCA 90 bp | TCCACCAGACAAGGGGCGCTTCGCTATTTGGTAGCTGTCACTCCAAAGGACTCTTCAGACTGTGCCTCCTaGACTTGGCTCCAGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: STRQGALRYLVAVTPKDSSDCAS*TWLQGA Trigger: AGCACCCTGGAGCCAAGTGCAGGAGGCACAGTCTGA...AGAGTCCTTTGGAGTGACAGCTACCAAATAGCGAAGCGCCCCTTGTCTGGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367361.6 |
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| CDS-3UTR GCA 90 bp | TCCACCAGACAAGGGGCGCTTCGCTATTTGGTAGCTGTCACTCCAAAGGACTCTCTTTGGGTCAGACTGTaGCTCCTGCACTTGGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: STRQGALRYLVAVTPKDSLWVRL*LLHLAP Trigger: TGGAGCCAAGTGCAGGAGGCACAGTCTGACCCAAAG...AGAGTCCTTTGGAGTGACAGCTACCAAATAGCGAAGCGCCCCTTGTCTGGTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367361.6 |
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| 3UTR CAA 72 bp | GTAGTGGCTCCGAATACCTGGCTGCGCCGTTATTTATaGTATACAAGGCAAGAGGGCAGGGTAAGGAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: VVAPNTWLRRYL*YTRQEGRVRSV Trigger: CACACTCCTTACCCTGCCCTCTTGCCTTGTATACAATAAATAACGGCGCAGCCAGGTATTCGGAGCCACTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367361.6 |
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| CDS CCA 90 bp | GGATCGCAGGGGACAGCAGAAGCGAAGCCCAGCCCGTGGATCACCTaGCGGCTCGCAGGCTGTCTGAATGCAGCCCGTCTGAATGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: GSQGTAEAKPSPWIT*RLAGCLNAARLNAA Trigger: GGCTGCATTCAGACGGGCTGCATTCAGACAGCCTGCGAGCCGCCAGGTGATCCACGGGCTGGGCTTCGCTTCTGCTGTCCCCTGCGATCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000367360.7 ENST00000479265.1 |
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| CDS CCA 90 bp | TGGGGAGTTGGATCGCAGGGGACAGCAGAAGCGAAGCCCAGCCCGTaGATCACCTGGCGGCTCGCAGGCTGTCTGAATGCAGCCCGTCTG | + |
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Preference number: 5 (lower is better) Translates to: WGVGSQGTAEAKPSP*ITWRLAGCLNAARL Trigger: CAGACGGGCTGCATTCAGACAGCCTGCGAGCCGCCAGGTGATCCACGGGCTGGGCTTCGCTTCTGCTGTCCCCTGCGATCCAACTCCCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000367360.7 ENST00000479265.1 |
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| CDS CCA 72 bp | GGGACAGCAGAAGCGAAGCCCAGCCCGTGGATCACCTaGCGGCTCGCAGGCTGTCTGAATGCAGCCCGTCTG | + |
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Preference number: 6 (lower is better) Translates to: GTAEAKPSPWIT*RLAGCLNAARL Trigger: CAGACGGGCTGCATTCAGACAGCCTGCGAGCCGCCAGGTGATCCACGGGCTGGGCTTCGCTTCTGCTGTCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000367360.7 ENST00000479265.1 |
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| CDS CCA 72 bp | GGATCGCAGGGGACAGCAGAAGCGAAGCCCAGCCCGTaGATCACCTGGCGGCTCGCAGGCTGTCTGAATGCA | + |
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Preference number: 6 (lower is better) Translates to: GSQGTAEAKPSP*ITWRLAGCLNA Trigger: TGCATTCAGACAGCCTGCGAGCCGCCAGGTGATCCACGGGCTGGGCTTCGCTTCTGCTGTCCCCTGCGATCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000367360.7 ENST00000479265.1 |
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