Pregenerated sensors for PRR13 (Homo sapiens)
Ensembl gene IDs: ENSG00000205352Ensembl transcript IDs: ENST00000549740.5, ENST00000549924.5, ENST00000551365.1, ENST00000552846.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGAATATGCACCTGGCGGGAGGGGAGCAAAAGTTCTGGGAGAGTAGGGCAGAAACACGTCCACAGAATGTaGATCCCCCTCACCCAACCC | + |
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Preference number: 2 (lower is better) Translates to: RICTWREGSKSSGRVGQKHVHRM*IPLTQP Trigger: GGGTTGGGTGAGGGGGATTCACATTCTGTGGACGTG...TTTCTGCCCTACTCTCCCAGAACTTTTGCTCCCCTCCCGCCAGGTGCATATTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| 3UTR-3UTR CAA 90 bp | AGAATATGCACCTGGCGGGAGGGGAGCAAAAGTTCTGGGAGAGTAGGGCAGAAAACCAGAGCGACACAATaGTCATCCCTCACGTCCACA | + |
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Preference number: 3 (lower is better) Translates to: RICTWREGSKSSGRVGQKTRATQ*SSLTST Trigger: TGTGGACGTGAGGGATGACAATTGTGTCGCTCTGGT...TTTCTGCCCTACTCTCCCAGAACTTTTGCTCCCCTCCCGCCAGGTGCATATTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS-3UTR TCA 90 bp | TTGTCATCCCTCACGTCCACAGAATGTGAATCCCCCTCACCCAACCCCTGCCTACACGTCCACAGAATGTaGATCCCCCTCACCCAACCC | + |
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Preference number: 4 (lower is better) Translates to: LSSLTSTECESPSPNPCLHVHRM*IPLTQP Trigger: GGGTTGGGTGAGGGGGATTCACATTCTGTGGACGTG...TAGGCAGGGGTTGGGTGAGGGGGATTCACATTCTGTGGACGTGAGGGATGACAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS-3UTR GCA 90 bp | AGAATATGCACCTGGCGGGAGGGGAGCAAAAGTTCTGGGAGAGTAGGGCAGAAACCCTCACCCAACCCCTaGCTACCTAGTCCCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: RICTWREGSKSSGRVGQKPSPNP*LPSPSE Trigger: CTCAGAGGGACTAGGTAGGCAGGGGTTGGGTGAGGG...TTTCTGCCCTACTCTCCCAGAACTTTTGCTCCCCTCCCGCCAGGTGCATATTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS-3UTR TCA 90 bp | AGAGCGACACAATTGTCATCCCTCACGTCCACAGAATGTGAATCCCCCTCACCCGTCTCCAGAGGGTACTaGCCTTGCCATGCTTGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: RATQLSSLTSTECESPSPVSRGY*PCHACG Trigger: ACCACAAGCATGGCAAGGTCAGTACCCTCTGGAGAC...GGGTGAGGGGGATTCACATTCTGTGGACGTGAGGGATGACAATTGTGTCGCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS-3UTR CCA 90 bp | TTGTCATCCCTCACGTCCACAGAATGTGAATCCCCCTCACCCAACCCCTGCCTAGCTAGAATATGCACCTaGCGGGAGGGGAGCAAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: LSSLTSTECESPSPNPCLARICT*REGSKS Trigger: ACTTTTGCTCCCCTCCCGCCAGGTGCATATTCTAGC...TAGGCAGGGGTTGGGTGAGGGGGATTCACATTCTGTGGACGTGAGGGATGACAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS-3UTR CCA 90 bp | AGAGCGACACAATTGTCATCCCTCACGTCCACAGAATGTGAATCCCCCTCACCCTGCTTGTGGTACTTGTaGTGCTTTTGGTGCTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: RATQLSSLTSTECESPSPCLWYL*CFWCLC Trigger: GCACAAGCACCAAAAGCACCACAAGTACCACAAGCA...GGGTGAGGGGGATTCACATTCTGTGGACGTGAGGGATGACAATTGTGTCGCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS-3UTR CCA 90 bp | AGAATATGCACCTGGCGGGAGGGGAGCAAAAGTTCTGGGAGAGTAGGGCAGAAAACCTTGCCATGCTTGTaGTACTTGTGGTGCTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RICTWREGSKSSGRVGQKTLPCL*YLWCFW Trigger: CCAAAAGCACCACAAGTACCACAAGCATGGCAAGGT...TTTCTGCCCTACTCTCCCAGAACTTTTGCTCCCCTCCCGCCAGGTGCATATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| 3UTR CAA 72 bp | TATAAAAAGGAAGAATCATCTACCAGAGCGACACAATaGTCATCCCTCACGTCCACAGAATGTGAATCCCCC | + |
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Preference number: 4 (lower is better) Translates to: YKKEESSTRATQ*SSLTSTECESP Trigger: GGGGGATTCACATTCTGTGGACGTGAGGGATGACAATTGTGTCGCTCTGGTAGATGATTCTTCCTTTTTATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS TCA 90 bp | CGCGAGTCTCGGCCCCACCATCACTCATCTCCCTTTCCCTGGAACTaGGTACGGAGGCCTTTAACCACGCACAGAGTAAGAAAGGATCTC | + |
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Preference number: 5 (lower is better) Translates to: RESRPHHHSSPFPWN*VRRPLTTHRVRKDL Trigger: GAGATCCTTTCTTACTCTGTGCGTGGTTAAAGGCCTCCGTACTCAGTTCCAGGGAAAGGGAGATGAGTGATGGTGGGGCCGAGACTCGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551365.1 |
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| CDS-3UTR CAA 90 bp | CAATTGTCATCCCTCACGTCCACAGAATGTGAATCCCCCTCACCCAACCCCTGCCAGAGGGTACTGACCTaGCCATGCTTGTGGTACTTG | + |
|
Preference number: 5 (lower is better) Translates to: QLSSLTSTECESPSPNPCQRVLT*PCLWYL Trigger: CAAGTACCACAAGCATGGCAAGGTCAGTACCCTCTG...GCAGGGGTTGGGTGAGGGGGATTCACATTCTGTGGACGTGAGGGATGACAATTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS-3UTR CAA 90 bp | AGAATATGCACCTGGCGGGAGGGGAGCAAAAGTTCTGGGAGAGTAGGGCAGAAACTGACCTTGCCATGCTaGTGGTACTTGTGGTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: RICTWREGSKSSGRVGQKLTLPC*WYLWCF Trigger: AAAGCACCACAAGTACCACAAGCATGGCAAGGTCAG...TTTCTGCCCTACTCTCCCAGAACTTTTGCTCCCCTCCCGCCAGGTGCATATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS GCA 72 bp | TCGCAGTCTCGGCTCTTCCTAGTCACCCAGACCCCGTaGTTCGGCACCCGCCTCTGCTACTGCCTAATTGGT | + |
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Preference number: 6 (lower is better) Translates to: SQSRLFLVTQTP*FGTRLCYCLIG Trigger: ACCAATTAGGCAGTAGCAGAGGCGGGTGCCGAAGCACGGGGTCTGGGTGACTAGGAAGAGCCGAGACTGCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549924.5 |
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| CDS TCA 72 bp | CGGCCCCACCATCACTCATCTCCCTTTCCCTGGAACTaGGTACGGAGGCCTTTAACCACGCACAGAGTAAGA | + |
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Preference number: 6 (lower is better) Translates to: RPHHHSSPFPWN*VRRPLTTHRVR Trigger: TCTTACTCTGTGCGTGGTTAAAGGCCTCCGTACTCAGTTCCAGGGAAAGGGAGATGAGTGATGGTGGGGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551365.1 |
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| CDS GCA 72 bp | TCCCTAGCCAGTCTCCAGAGGGTACTGACCTTGCCATaGTTGTGGTACTTGTGGTGCTTTTGGTGCTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: SLASLQRVLTLP*LWYLWCFWCLC Trigger: GCACAAGCACCAAAAGCACCACAAGTACCACAAGCATGGCAAGGTCAGTACCCTCTGGAGACTGGCTAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549740.5 |
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| CDS CAA 72 bp | AAAGCACTGGTCAGCTCTAGACTAAGGACTTTGCTTTaGCGGGTACAGCAGGTCGGGGGTAGGGGAGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: KALVSSRLRTLL*RVQQVGGRGAD Trigger: ATCAGCTCCCCTACCCCCGACCTGCTGTACCCGCAAAAGCAAAGTCCTTAGTCTAGAGCTGACCAGTGCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000551365.1 ENST00000552846.1 |
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