Pregenerated sensors for PRAMEF18 (Homo sapiens)
Ensembl gene IDs: ENSG00000277853, ENSG00000279804Ensembl transcript IDs: ENST00000624297.2, ENST00000632307.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGTTCCCTTTATAATACACCTATAGACCCGGCACAGCTGCTTATGCCTGTAATCTTAAGCGTAAGAGTTTaGGACCAGCCTGGACAACAT | + |
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Preference number: 2 (lower is better) Translates to: CSLYNTPIDPAQLLMPVILSVRV*DQPGQH Trigger: ATGTTGTCCAGGCTGGTCTCAAACTCTTACGCTTAA...GATTACAGGCATAAGCAGCTGTGCCGGGTCTATAGGTGTATTATAAAGGGAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000624297.2 ENST00000632307.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTCCCTTTATAATACACCTATAGACCCGGCACAGCTGCTTATGCCTGTAATCCTTAAGCGTAAGAGTTaGAGACCAGCCTGGACAACA | + |
|
Preference number: 3 (lower is better) Translates to: CSLYNTPIDPAQLLMPVILKRKS*RPAWTT Trigger: TGTTGTCCAGGCTGGTCTCAAACTCTTACGCTTAAG...GATTACAGGCATAAGCAGCTGTGCCGGGTCTATAGGTGTATTATAAAGGGAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000624297.2 ENST00000632307.2 |
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| CDS-3UTR TCA 90 bp | TGTTCCCTTTATAATACACCTATAGACCCGGCACAGCTGCTTATGCCTGTAATCGGTCCAGGTGGCCTCTaGAGAAGCAGACCCTTCTTA | + |
|
Preference number: 4 (lower is better) Translates to: CSLYNTPIDPAQLLMPVIGPGGL*RSRPFL Trigger: TAAGAAGGGTCTGCTTCTTCAGAGGCCACCTGGACC...GATTACAGGCATAAGCAGCTGTGCCGGGTCTATAGGTGTATTATAAAGGGAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000624297.2 ENST00000632307.2 |
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| CDS-3UTR CCA 90 bp | TGTTCCCTTTATAATACACCTATAGACCCGGCACAGCTGCTTATGCCTGTAATCGTAATCCCAGAATCTTaGGAGGCCAAGCAGGGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: CSLYNTPIDPAQLLMPVIVIPES*EAKQGA Trigger: AGCCCCCTGCTTGGCCTCCCAAGATTCTGGGATTAC...GATTACAGGCATAAGCAGCTGTGCCGGGTCTATAGGTGTATTATAAAGGGAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000624297.2 ENST00000632307.2 |
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