Pregenerated sensors for PPP2R2B-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000249553Ensembl transcript IDs: ENST00000505921.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACTTGGACTCAGAGGAGAACATCCATGGGGTCCTTTGGGAAGCAGTaGTTAGGGTGGTGGCAGTTTACACAATTGTCCCACTGCACTGCA | + |
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Preference number: 5 (lower is better) Translates to: TWTQRRTSMGSFGKQ*LGWWQFTQLSHCTA Trigger: TGCAGTGCAGTGGGACAATTGTGTAAACTGCCACCACCCTAACCACTGCTTCCCAAAGGACCCCATGGATGTTCTCCTCTGAGTCCAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS CCA 90 bp | AGCTTGTGTAACTTGGACTCAGAGGAGAACATCCATGGGGTCCTTTaGGAAGCAGTGGTTAGGGTGGTGGCAGTTTACACAATTGTCCCA | + |
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Preference number: 5 (lower is better) Translates to: SLCNLDSEENIHGVL*EAVVRVVAVYTIVP Trigger: TGGGACAATTGTGTAAACTGCCACCACCCTAACCACTGCTTCCCAAAGGACCCCATGGATGTTCTCCTCTGAGTCCAAGTTACACAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS CCA 90 bp | CAAAATAGAGGCCACATGCTTTCTGCTTGTCAAGCTTGTGTAACTTaGACTCAGAGGAGAACATCCATGGGGTCCTTTGGGAAGCAGTGG | + |
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Preference number: 5 (lower is better) Translates to: QNRGHMLSACQACVT*TQRRTSMGSFGKQW Trigger: CCACTGCTTCCCAAAGGACCCCATGGATGTTCTCCTCTGAGTCCAAGTTACACAAGCTTGACAAGCAGAAAGCATGTGGCCTCTATTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS GCA 90 bp | GCAGTGGTTAGGGTGGTGGCAGTTTACACAATTGTCCCACTGCACTaGATCCTGGTACGTCATTACAACCTTTTACTGAGTCCTGTTGTT | + |
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Preference number: 5 (lower is better) Translates to: AVVRVVAVYTIVPLH*ILVRHYNLLLSPVV Trigger: AACAACAGGACTCAGTAAAAGGTTGTAATGACGTACCAGGATGCAGTGCAGTGGGACAATTGTGTAAACTGCCACCACCCTAACCACTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS TCA 90 bp | TCAAGGATGCGAAGTATCTGTTTAACAGTAAAGTGCCAAGCAATCTaGCATCTCCTCCTAAAGTTGGTAATACTCCCCAAAATCTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: SRMRSICLTVKCQAI*HLLLKLVILPKIWF Trigger: AAACCAGATTTTGGGGAGTATTACCAACTTTAGGAGGAGATGTCAGATTGCTTGGCACTTTACTGTTAAACAGATACTTCGCATCCTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS GCA 90 bp | CCTGGTACGTCATTACAACCTTTTACTGAGTCCTGTTGTTTTATTTaGTACTCAAGGATGCGAAGTATCTGTTTAACAGTAAAGTGCCAA | + |
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Preference number: 5 (lower is better) Translates to: PGTSLQPFTESCCFI*YSRMRSICLTVKCQ Trigger: TTGGCACTTTACTGTTAAACAGATACTTCGCATCCTTGAGTAGCAAATAAAACAACAGGACTCAGTAAAAGGTTGTAATGACGTACCAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS CCA 72 bp | CAGAGGAGAACATCCATGGGGTCCTTTGGGAAGCAGTaGTTAGGGTGGTGGCAGTTTACACAATTGTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: QRRTSMGSFGKQ*LGWWQFTQLSH Trigger: GTGGGACAATTGTGTAAACTGCCACCACCCTAACCACTGCTTCCCAAAGGACCCCATGGATGTTCTCCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS GCA 72 bp | AGGGTGGTGGCAGTTTACACAATTGTCCCACTGCACTaGATCCTGGTACGTCATTACAACCTTTTACTGAGT | + |
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Preference number: 6 (lower is better) Translates to: RVVAVYTIVPLH*ILVRHYNLLLS Trigger: ACTCAGTAAAAGGTTGTAATGACGTACCAGGATGCAGTGCAGTGGGACAATTGTGTAAACTGCCACCACCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS GCA 72 bp | TGGTTAGGGTGGTGGCAGTTTACACAATTGTCCCACTaGACTGCATCCTGGTACGTCATTACAACCTTTTAC | + |
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Preference number: 6 (lower is better) Translates to: WLGWWQFTQLSH*TASWYVITTFY Trigger: GTAAAAGGTTGTAATGACGTACCAGGATGCAGTGCAGTGGGACAATTGTGTAAACTGCCACCACCCTAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS TCA 72 bp | CGAAGTATCTGTTTAACAGTAAAGTGCCAAGCAATCTaGCATCTCCTCCTAAAGTTGGTAATACTCCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: RSICLTVKCQAI*HLLLKLVILPK Trigger: TTTGGGGAGTATTACCAACTTTAGGAGGAGATGTCAGATTGCTTGGCACTTTACTGTTAAACAGATACTTCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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| CDS GCA 72 bp | TCATTACAACCTTTTACTGAGTCCTGTTGTTTTATTTaGTACTCAAGGATGCGAAGTATCTGTTTAACAGTA | + |
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Preference number: 6 (lower is better) Translates to: SLQPFTESCCFI*YSRMRSICLTV Trigger: TACTGTTAAACAGATACTTCGCATCCTTGAGTAGCAAATAAAACAACAGGACTCAGTAAAAGGTTGTAATGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000505921.1 |
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