RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PKN2 (Homo sapiens)

Ensembl gene IDs: ENSG00000065243

Ensembl transcript IDs: ENST00000316005.11, ENST00000370513.9, ENST00000370521.8, ENST00000436111.1, ENST00000449189.1, ENST00000495119.1

Found 257 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCAGCTCGTGGTGGGGCTaGAGGAGGTTCAGGCTCAAG +
Preference number: 2 (lower is better)
Translates to: LIHSVKRNYARFKMACLSSSWWG*RRFRLK
Trigger: CTTGAGCCTGAACCTCCTCCAGCCCCACCACGAGCT...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
3UTR-3UTR CCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCAAGAGAAGAAGCTCGTaGTGGGGCTGGAGGAGGTTC +
Preference number: 2 (lower is better)
Translates to: LIHSVKRNYARFKMACLSKRRSS*WGWRRF
Trigger: GAACCTCCTCCAGCCCCACCACGAGCTTCTTCTCTT...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
3UTR-3UTR CCA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTGGCAAGCAGCTCTGTTaGAAAGCTATAAGCCTGTTA +
Preference number: 2 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFGKQLC*KAISLL
Trigger: TAACAGGCTTATAGCTTTCCAACAGAGCTGCTTGCC...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
3UTR-3UTR TCA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTACAGCTTGCTATTCCTaGGGTATAATGACCCTAACA +
Preference number: 2 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFTACYS*GIMTLT
Trigger: TGTTAGGGTCATTATACCTCAGGAATAGCAAGCTGT...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
3UTR-3UTR CCA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTGGTTTAACCAAGTTATaGTTCCCTTCTACAGCAGAC +
Preference number: 2 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFGLTKL*FPSTAD
Trigger: GTCTGCTGTAGAAGGGAACCATAACTTGGTTAAACC...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
3UTR CCA 72 bp ATCTATTTCTCCAAGAGAAGAAGCTCGTGGTGGGGCTaGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTT +
Preference number: 3 (lower is better)
Translates to: IYFSKRRSSWWG*RRFRLKIKVQF
Trigger: AAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGCCCCACCACGAGCTTCTTCTCTTGGAGAAATAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
3UTR-3UTR CAA 90 bp CGGTTTAACCAAGTTATGGTTCCCTTCTACAGCAGACACAAAACCAAGGTGAACAAAACTCAGAAGCTATaGGTGGCACAGAGAGCAAAT +
Preference number: 3 (lower is better)
Translates to: RFNQVMVPFYSRHKTKVNKTQKL*VAQRAN
Trigger: ATTTGCTCTCTGTGCCACCAATAGCTTCTGAGTTTT...GTTCACCTTGGTTTTGTGTCTGCTGTAGAAGGGAACCATAACTTGGTTAAACCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000370521.8
3UTR-3UTR CAA 90 bp CGGTTTAACCAAGTTATGGTTCCCTTCTACAGCAGACACAAAACCAAGGTGAACAGAGCAAATGAAGGGTaGCTATTTTTAAGAGGTCTT +
Preference number: 3 (lower is better)
Translates to: RFNQVMVPFYSRHKTKVNRANEG*LFLRGL
Trigger: AAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCT...GTTCACCTTGGTTTTGTGTCTGCTGTAGAAGGGAACCATAACTTGGTTAAACCG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAATCTAGTCGCTCCCTCTaGGCGACGCCAGGAGCCGCC +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQSSRSL*ATPGAA
Trigger: GGCGGCTCCTGGCGTCGCCCAGAGGGAGCGACTAGA...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTTATGGACTCCGCACCTaGACGCGGCCGCCTCTGGCG +
Preference number: 4 (lower is better)
Translates to: FSWPMFTQLKLHETVSSAYGLRT*TRPPLA
Trigger: CGCCAGAGGCGGCCGCGTCCAGGTGCGGAGTCCATA...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAAAGGCGCAGCCCCTGCTaGAGGCGCGGCTTATTCCGT +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQRRSPC*RRGLFR
Trigger: ACGGAATAAGCCGCGCCTCCAGCAGGGGCTGCGCCT...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAAGGCGCAGCCCCTGCTaGAGGCGCGGCTTATTCCGT +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFARRSPC*RRGLFR
Trigger: ACGGAATAAGCCGCGCCTCCAGCAGGGGCTGCGCCT...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTATGGACTCCGCACCTaGACGCGGCCGCCTCTGGCG +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSYGLRT*TRPPLA
Trigger: CGCCAGAGGCGGCCGCGTCCAGGTGCGGAGTCCATA...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACCATTGCGCTCCGGTATaGACTCCGCACCTGGACGCG +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNHCAPV*TPHLDA
Trigger: CGCGTCCAGGTGCGGAGTCCATACCGGAGCGCAATG...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCAAGCTCGTGGTGGGGCTaGAGGAGGTTCAGGCTCAAG +
Preference number: 4 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESSSWWG*RRFRLK
Trigger: CTTGAGCCTGAACCTCCTCCAGCCCCACCACGAGCT...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGAGCTCGTGGTGGGGCTaGAGGAGGTTCAGGCTCAAG +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVSSWWG*RRFRLK
Trigger: CTTGAGCCTGAACCTCCTCCAGCCCCACCACGAGCT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAACCGGGAGGCGGAGGTTaGAGTGAGCCGAGATCATGC +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQPGGGG*SEPRSC
Trigger: GCATGATCTCGGCTCACTGCAACCTCCGCCTCCCGG...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCAACAACTAGGGATTCATaGAGGCGCAGCCCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESTTRDS*RRSPCW
Trigger: CCAGCAGGGGCTGCGCCTCCATGAATCCCTAGTTGT...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAACATTGCGCTCCGGTATaGACTCCGCACCTGGACGCG +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQHCAPV*TPHLDA
Trigger: CGCGTCCAGGTGCGGAGTCCATACCGGAGCGCAATG...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGAGAAGAAGCTCGTGGTaGGGCTGGAGGAGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVRRSSW*GWRRFR
Trigger: CCTGAACCTCCTCCAGCCCCACCACGAGCTTCTTCT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACGTAGGCACAGGAGCTTaGGGGCTGAAGGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNVGTGA*GLKVPE
Trigger: TTCTGGCACCTTCAGCCCTCAAGCTCCTGTGCCTAC...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCGTAGGCACAGGAGCTTaGGGGCTGAAGGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSVGTGA*GLKVPE
Trigger: TTCTGGCACCTTCAGCCCTCAAGCTCCTGTGCCTAC...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCAGCTGGAGGTGCTAGTTaGGGGATGCGTACATCAACC +
Preference number: 4 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESAGGAS*GMRTST
Trigger: GGTTGATGTACGCATCCCTCAACTAGCACCTCCAGC...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGGCTGGAGGTGCTAGTTaGGGGATGCGTACATCAACC +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVAGGAS*GMRTST
Trigger: GGTTGATGTACGCATCCCTCAACTAGCACCTCCAGC...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCGGGGTTGGACGCCATTaGGCTCCGGTATGGACTCCG +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSGVGRH*APVWTP
Trigger: CGGAGTCCATACCGGAGCGCAATGGCGTCCAACCCC...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTGGGGTTGGACGCCATTaGGCTCCGGTATGGACTCCG +
Preference number: 4 (lower is better)
Translates to: APSCIQTATVFDITVMSFGVGRH*APVWTP
Trigger: CGGAGTCCATACCGGAGCGCAATGGCGTCCAACCCC...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTTCTAGTCGCTCCCTCTaGGCGACGCCAGGAGCCGCC +
Preference number: 4 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFSSRSL*ATPGAA
Trigger: GGCGGCTCCTGGCGTCGCCCAGAGGGAGCGACTAGA...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACACAACTAGGGATTCATaGAGGCGCAGCCCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNTTRDS*RRSPCW
Trigger: CCAGCAGGGGCTGCGCCTCCATGAATCCCTAGTTGT...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp CTGTTTCCAGTGCTCATATTTACGCTGAAGTACAATGAGGAGCCACTTTTGAAGAGAAGAAGCTCGTGGTaGGGCTGGAGGAGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LFPVLIFTLKYNEEPLLKRRSSW*GWRRFR
Trigger: CCTGAACCTCCTCCAGCCCCACCACGAGCTTCTTCT...CTTCAAAAGTGGCTCCTCATTGTACTTCAGCGTAAATATGAGCACTGGAAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCAAAGAGAAGAAGCTCGTaGTGGGGCTGGAGGAGGTTC +
Preference number: 4 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESKRRSS*WGWRRF
Trigger: GAACCTCCTCCAGCCCCACCACGAGCTTCTTCTCTT...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCAAGAGAAGAAGCTCGTaGTGGGGCTGGAGGAGGTTC +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVKRRSS*WGWRRF
Trigger: GAACCTCCTCCAGCCCCACCACGAGCTTCTTCTCTT...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAAGTAGGCACAGGAGCTTaGGGGCTGAAGGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQVGTGA*GLKVPE
Trigger: TTCTGGCACCTTCAGCCCTCAAGCTCCTGTGCCTAC...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACTCCTGGAGCAGTTGCTaGGCTGTACCATGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNSWSSC*AVPWSF
Trigger: GAAACTCCATGGTACAGCTCAGCAACTGCTCCAGGA...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCTCCTGGAGCAGTTGCTaGGCTGTACCATGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSSWSSC*AVPWSF
Trigger: GAAACTCCATGGTACAGCTCAGCAACTGCTCCAGGA...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCTGGAGGTGCTAGTTaGGGGATGCGTACATCAACC +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFAGGAS*GMRTST
Trigger: GGTTGATGTACGCATCCCTCAACTAGCACCTCCAGC...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCAGAAGAAGCTCGTGGTaGGGCTGGAGGAGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSRRSSW*GWRRFR
Trigger: CCTGAACCTCCTCCAGCCCCACCACGAGCTTCTTCT...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAAAGAGAAGAAGCTCGTaGTGGGGCTGGAGGAGGTTC +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAKRRSS*WGWRRF
Trigger: GAACCTCCTCCAGCCCCACCACGAGCTTCTTCTCTT...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAATCCTGGAGCAGTTGCTaGGCTGTACCATGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQSWSSC*AVPWSF
Trigger: GAAACTCCATGGTACAGCTCAGCAACTGCTCCAGGA...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCCAGGAGCTTGAGGGCTaGAGGTGCCAGAATGATTTA +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSQELEG*RCQNDL
Trigger: TAAATCATTCTGGCACCTTCAGCCCTCAAGCTCCTG...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCGTAAATGCTGGAGTTTaGGGTGTCTGCTTGGCCACT +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSVNAGV*GVCLAT
Trigger: AGTGGCCAAGCAGACACCTCAAACTCCAGCATTTAC...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTTTCCGAAAGTATCCTTaGTTCTCGAGGTGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSFRKYP*FSRWSQ
Trigger: CTGACTCCACCTCGAGAACCAAGGATACTTTCGGAA...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTCAGGAGCTTGAGGGCTaGAGGTGCCAGAATGATTTA +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLQELEG*RCQNDL
Trigger: TAAATCATTCTGGCACCTTCAGCCCTCAAGCTCCTG...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCCCATTATTCCCAATaGAGTGGACAGTTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVSHYSQ*SGQFAL
Trigger: CAGAGCAAACTGTCCACTTCATTGGGAATAATGGGA...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAAGTGCTAGTTGAGGGATaGGTACATCAACCACTGGCA +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQVLVEG*VHQPLA
Trigger: TGCCAGTGGTTGATGTACGCATCCCTCAACTAGCAC...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGTGCTAGTTGAGGGATaGGTACATCAACCACTGGCA +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFVLVEG*VHQPLA
Trigger: TGCCAGTGGTTGATGTACGCATCCCTCAACTAGCAC...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGTGCTAGTTGAGGGATaGGTACATCAACCACTGGCA +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLVLVEG*VHQPLA
Trigger: TGCCAGTGGTTGATGTACGCATCCCTCAACTAGCAC...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAATCCTGTCGCACCATTTaGCTGTCACCGCGTCGCAAA +
Preference number: 4 (lower is better)
Translates to: GSGSRSKSNLVTVESLIESCRTI*LSPRRK
Trigger: TTTGCGACGCGGTGACAGCCAAATGGTGCGACAGGA...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCGGTTTCCAGCTAGTTTaGCCAACCACAGTATTATCG +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVGFQLV*PTTVLS
Trigger: CGATAATACTGTGGTTGGCCAAACTAGCTGGAAACC...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCACCTTGGTTCTCGAGGTaGAGTCAGAATAGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAPWFSR*SQNRCF
Trigger: GAAGCACCTATTCTGACTCCACCTCGAGAACCAAGG...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTCCTTGGTTCTCGAGGTaGAGTCAGAATAGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: FSWPMFTQLKLHETVSSAPWFSR*SQNRCF
Trigger: GAAGCACCTATTCTGACTCCACCTCGAGAACCAAGG...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCATCTTGCTTGAGCTTCTaGAAGTGCTTTTCTGTCTGT +
Preference number: 4 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESSCLSF*KCFSVC
Trigger: ACAGACAGAAAAGCACTTTCAGAAGCTCAAGCAAGA...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTCTTGCTTGAGCTTCTaGAAGTGCTTTTCTGTCTGT +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVSCLSF*KCFSVC
Trigger: ACAGACAGAAAAGCACTTTCAGAAGCTCAAGCAAGA...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACATCCTGCTTTTGGGATaGTTCTTGGGGACTTCGTTT +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNILLLG*FLGTSF
Trigger: AAACGAAGTCCCCAAGAATCATCCCAAAAGCAGGAT...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTACTCGTTCTGCTCATaGAAGATGATCTGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVYSFCS*KMIWFH
Trigger: GTGAAACCAGATCATCTTTCATGAGCAGAACGAGTA...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTACTCGTTCTGCTCATaGAAGATGATCTGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVYSFCS*KMIWFH
Trigger: GTGAAACCAGATCATCTTTCATGAGCAGAACGAGTA...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCATTCTGGTCCCATGACTaGTTGGAAATGGGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAFWSHD*LEMGFQ
Trigger: CTGGAAACCCATTTCCAATCAGTCATGGGACCAGAA...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTTTCTGGTCCCATGACTaGTTGGAAATGGGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLFWSHD*LEMGFQ
Trigger: CTGGAAACCCATTTCCAATCAGTCATGGGACCAGAA...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAAAATTTCCAGTTCACGTaGCCTGTCCAGTTCCAGTGT +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQNFQFT*PVQFQC
Trigger: ACACTGGAACTGGACAGGTCACGTGAACTGGAAATT...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTAATTTCCAGTTCACGTaGCCTGTCCAGTTCCAGTGT +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLNFQFT*PVQFQC
Trigger: ACACTGGAACTGGACAGGTCACGTGAACTGGAAATT...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCTATTCTAGGCCTGACTaGGGAGTATCAGGCTTGTAT +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSYSRPD*GVSGLY
Trigger: ATACAAGCCTGATACTCCTCAGTCAGGCCTAGAATA...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACTATTCTAGGCCTGACTaGGGAGTATCAGGCTTGTAT +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNYSRPD*GVSGLY
Trigger: ATACAAGCCTGATACTCCTCAGTCAGGCCTAGAATA...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CTGTTTCCAGTGCTCATATTTACGCTGAAGTACAATGAGGAGCCACTTTTGAAGGACACAAAACCAAGGTaGACTAGGTTGGCAGATGTA +
Preference number: 4 (lower is better)
Translates to: LFPVLIFTLKYNEEPLLKDTKPR*TRLADV
Trigger: TACATCTGCCAACCTAGTTCACCTTGGTTTTGTGTC...CTTCAAAAGTGGCTCCTCATTGTACTTCAGCGTAAATATGAGCACTGGAAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGGTGGACAGTTTGCTCTaGATGTTCATGGTTTTAAGC +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVVDSLL*MFMVLS
Trigger: GCTTAAAACCATGAACATTCAGAGCAAACTGTCCAC...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTTTCATTAGTCTGGACTaGCTGAAGAATCTGCATTCG +
Preference number: 4 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSFISLD*LKNLHS
Trigger: CGAATGCAGATTCTTCAGGCAGTCCAGACTAATGAA...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTTCTCTGAACATTTCCTaGTCCTCTTCCGAAAGTATC +
Preference number: 4 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSSLNIS*SSSESI
Trigger: GATACTTTCGGAAGAGGAGCAGGAAATGTTCAGAGA...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTTTCTCTAGGATATCTTaGCAGCCCATAAGACGAACT +
Preference number: 4 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSFSRIS*QPIRRT
Trigger: AGTTCGTCTTATGGGCTGCCAAGATATCCTAGAGAA...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
3UTR CAA 72 bp CAGAAGCTATTGGTGGCACAGAGAGCAAATGAAGGGTaGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTT +
Preference number: 4 (lower is better)
Translates to: QKLLVAQRANEG*LFLRGLLVSQL
Trigger: AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTGTGCCACCAATAGCTTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCGTAGATATCATACTTTaGCGTGGACTTAGTGTTGGT +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVVDIIL*RGLSVG
Trigger: ACCAACACTAAGTCCACGTCAAAGTATGATATCTAC...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTTCTGGTCCCATGACTaGTTGGAAATGGGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSFWSHD*LEMGFQ
Trigger: CTGGAAACCCATTTCCAATCAGTCATGGGACCAGAA...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACCTGAAGGTGCCAGAATaGTTTACTGTAGGAATAGCT +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNLKVPE*FTVGIA
Trigger: AGCTATTCCTACAGTAAATCATTCTGGCACCTTCAG...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGATCAAAAACAGTCTCTaGATCCTGTCCTGGTATATC +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVIKNSL*ILSWYI
Trigger: GATATACCAGGACAGGATTCAGAGACTGTTTTTGAT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTATCAAAAACAGTCTCTaGATCCTGTCCTGGTATATC +
Preference number: 4 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSIKNSL*ILSWYI
Trigger: GATATACCAGGACAGGATTCAGAGACTGTTTTTGAT...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTTGCTCATATTTACGCTaGAGTACAATGAGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: FSWPMFTQLKLHETVSSACSYLR*STMRSH
Trigger: GTGGCTCCTCATTGTACTTCAGCGTAAATATGAGCA...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp CGGTTTAACCAAGTTATGGTTCCCTTCTACAGCAGACACAAAACCAAGGTGAACATCCAAAAGTATTCGTaGTGGATTTTCATGGCCGAT +
Preference number: 4 (lower is better)
Translates to: RFNQVMVPFYSRHKTKVNIQKYS*WIFMAD
Trigger: ATCGGCCATGAAAATCCATCACGAATACTTTTGGAT...GTTCACCTTGGTTTTGTGTCTGCTGTAGAAGGGAACCATAACTTGGTTAAACCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTGCACCTTCTGCTACTaGAAACTCTATCCTAAAATG +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVCTFCY*KLYPKM
Trigger: CATTTTAGGATAGAGTTTGCAGTAGCAGAAGGTGCA...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAACCAAATAGAGACACATaGCATGCCGTTGGTTGTCTA +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQPNRDT*HAVGCL
Trigger: TAGACAACCAACGGCATGGCATGTGTCTCTATTTGG...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCCCAAATAGAGACACATaGCATGCCGTTGGTTGTCTA +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFPNRDT*HAVGCL
Trigger: TAGACAACCAACGGCATGGCATGTGTCTCTATTTGG...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCGAGTGCCACAAAATGTaGTTGTTCTATCTCCATATC +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVECHKM*LFYLHI
Trigger: GATATGGAGATAGAACAAGCACATTTTGTGGCACTC...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTCAAGAAATTCAGGAGTaGCACAAAATGTGCTTGTTC +
Preference number: 4 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSQEIQE*HKMCLF
Trigger: GAACAAGCACATTTTGTGGCACTCCTGAATTTCTTG...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGAGTATCTGGAGTCCTTaGGCAATCTGTAATATCTTC +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVSIWSP*AICNIF
Trigger: GAAGATATTACAGATTGCCCAAGGACTCCAGATACT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTATTATTTGGAGTATCTaGAGTCCTTGGGCAATCTGT +
Preference number: 4 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSIIWSI*SPWAIC
Trigger: ACAGATTGCCCAAGGACTCCAGATACTCCAAATAAT...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAAACGAGGGTCATTATTTaGAGTATCTGGAGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQTRVII*SIWSPW
Trigger: CCAAGGACTCCAGATACTCCAAATAATGACCCTCGT...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCACGAGGGTCATTATTTaGAGTATCTGGAGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFTRVII*SIWSPW
Trigger: CCAAGGACTCCAGATACTCCAAATAATGACCCTCGT...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp CTGTTTCCAGTGCTCATATTTACGCTGAAGTACAATGAGGAGCCACTTTTGAAGTTCTCTAGGATATCTTaGCAGCCCATAAGACGAACT +
Preference number: 4 (lower is better)
Translates to: LFPVLIFTLKYNEEPLLKFSRIS*QPIRRT
Trigger: AGTTCGTCTTATGGGCTGCCAAGATATCCTAGAGAA...CTTCAAAAGTGGCTCCTCATTGTACTTCAGCGTAAATATGAGCACTGGAAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTCTCAGAAGCTATTGGTaGCACAGAGAGCAAATGAAG +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLLRSYW*HREQMK
Trigger: CTTCATTTGCTCTCTGTGCCACCAATAGCTTCTGAG...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACGGTTTAACCAAGTTATaGTTCCCTTCTACAGCAGAC +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNGLTKL*FPSTAD
Trigger: GTCTGCTGTAGAAGGGAACCATAACTTGGTTAAACC...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTGCAAGTGGAAAGTCATaGTTTGTAAAAAGACAACCC +
Preference number: 4 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSASGKS*FVKRQP
Trigger: GGGTTGTCTTTTTACAAACCATGACTTTCCACTTGC...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCAGTCCAACTTCTGACTTaGTTCATTAAATCTTGCTTG +
Preference number: 4 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESVQLLT*FIKSCL
Trigger: CAAGCAAGATTTAATGAATCAAGTCAGAAGTTGGAC...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCGTCCAACTTCTGACTTaGTTCATTAAATCTTGCTTG +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVVQLLT*FIKSCL
Trigger: CAAGCAAGATTTAATGAATCAAGTCAGAAGTTGGAC...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTCTGAAGGTGCCAGAATaGTTTACTGTAGGAATAGCT +
Preference number: 4 (lower is better)
Translates to: FSWPMFTQLKLHETVSSALKVPE*FTVGIA
Trigger: AGCTATTCCTACAGTAAATCATTCTGGCACCTTCAG...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGCAGGAGCTTGAGGGCTaGAGGTGCCAGAATGATTTA +
Preference number: 4 (lower is better)
Translates to: KTRLIHYDAFIANSFSEEQELEG*RCQNDL
Trigger: TAAATCATTCTGGCACCTTCAGCCCTCAAGCTCCTG...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACGAAAAGACATCAGTATaGATGTGCATCATTAGGTCC +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNEKTSV*MCIIRS
Trigger: GGACCTAATGATGCACATTCATACTGATGTCTTTTC...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTTACGCTGAAGTACAATaGGGAGCCACTTTTGAAGAA +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLYAEVQ*GATFEE
Trigger: TTCTTCAAAAGTGGCTCCTCATTGTACTTCAGCGTA...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCGTTCTCAGAGTACAATaGAAAGATGCTAAAACATCC +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVVLRVQ*KDAKTS
Trigger: GGATGTTTTAGCATCTTTTCATTGTACTCTGAGAAC...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTCATCCAATTTCTGCTaGACCATTGTATCTGAAAAG +
Preference number: 4 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVSSNFC*TIVSEK
Trigger: CTTTTCAGATACAATGGTGCAGCAGAAATTGGATGA...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACATTCTTTGCACCTTCTaGTACTGCAAACTCTATCCT +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNILCTF*YCKLYP
Trigger: AGGATAGAGTTTGCAGTAGCAGAAGGTGCAAAGAAT...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAGTATCTGGAGTCCTTaGGCAATCTGTAATATCTTC +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSSIWSP*AICNIF
Trigger: GAAGATATTACAGATTGCCCAAGGACTCCAGATACT...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTACGAGGGTCATTATTTaGAGTATCTGGAGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: APSCIQTATVFDITVMSFTRVII*SIWSPW
Trigger: CCAAGGACTCCAGATACTCCAAATAATGACCCTCGT...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACCAGCACAGACATCATTaGACAAGTCATCGGTTTTTA +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNQHRHH*TSHRFL
Trigger: TAAAAACCGATGACTTGTCCAATGATGTCTGTGCTG...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCGGTTTCCAGCTAGTTTaGCCAACCACAGTATTATCG +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSGFQLV*PTTVLS
Trigger: CGATAATACTGTGGTTGGCCAAACTAGCTGGAAACC...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTAAACTCAGAAGCTATTaGTGGCACAGAGAGCAAATG +
Preference number: 4 (lower is better)
Translates to: FSWPMFTQLKLHETVSSAKLRSY*WHREQM
Trigger: CATTTGCTCTCTGTGCCACCAATAGCTTCTGAGTTT...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTCGTGATGGATTTTCATaGCCGATGTTCACTCAACTT +
Preference number: 4 (lower is better)
Translates to: FSWPMFTQLKLHETVSSARDGFS*PMFTQL
Trigger: AAGTTGAGTGAACATCGGCCATGAAAATCCATCACG...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAAATCCTGCTTTTGGGATaGTTCTTGGGGACTTCGTTT +
Preference number: 4 (lower is better)
Translates to: GSGSRSKSNLVTVESLIEILLLG*FLGTSF
Trigger: AAACGAAGTCCCCAAGAATCATCCCAAAAGCAGGAT...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp ATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTCATATTTACGCTATCCTGCTTTTGGGATaGTTCTTGGGGACTTCGTTT +
Preference number: 4 (lower is better)
Translates to: MFTQLKLHETVSSAHIYAILLLG*FLGTSF
Trigger: AAACGAAGTCCCCAAGAATCATCCCAAAAGCAGGAT...AGCGTAAATATGAGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTAGATATCATACTTTaGCGTGGACTTAGTGTTGGT +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAVDIIL*RGLSVG
Trigger: ACCAACACTAAGTCCACGTCAAAGTATGATATCTAC...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCCTGAAGGTGCCAGAATaGTTTACTGTAGGAATAGCT +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSLKVPE*FTVGIA
Trigger: AGCTATTCCTACAGTAAATCATTCTGGCACCTTCAG...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCCTGTCCTCAAGTTCTTaGATACCACTATATTCTAGG +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFLSSSS*IPLYSR
Trigger: CCTAGAATATAGTGGTATTCAAGAACTTGAGGACAG...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTCTGTCCTCAAGTTCTTaGATACCACTATATTCTAGG +
Preference number: 4 (lower is better)
Translates to: FSWPMFTQLKLHETVSSALSSSS*IPLYSR
Trigger: CCTAGAATATAGTGGTATTCAAGAACTTGAGGACAG...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGAAAAGACATCAGTATaGATGTGCATCATTAGGTCC +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAEKTSV*MCIIRS
Trigger: GGACCTAATGATGCACATTCATACTGATGTCTTTTC...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCCAGAATAGGTGCTTCTaGGGTAAATTCATCATCAAA +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSQNRCF*GKFIIK
Trigger: TTTGATGATGAATTTACCTCAGAAGCACCTATTCTG...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACATGAGGAGCCACTTTTaGAGAAGTATTAGAATGGTA +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNMRSHF*RSIRMV
Trigger: TACCATTCTAATACTTCTTCAAAAGTGGCTCCTCAT...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACATATCTTGGTTCGGCTaGTTAAAAGTCCTCATTCTT +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNISWFG*LKVLIL
Trigger: AAGAATGAGGACTTTTAATCAGCCGAACCAAGATAT...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTACAGCTTGCTATTCCTaGGGTATAATGACCCTAACA +
Preference number: 4 (lower is better)
Translates to: APSCIQTATVFDITVMSFTACYS*GIMTLT
Trigger: TGTTAGGGTCATTATACCTCAGGAATAGCAAGCTGT...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTTTCATTAGTCTGGACTaGCTGAAGAATCTGCATTCG +
Preference number: 4 (lower is better)
Translates to: APSCIQTATVFDITVMSFFISLD*LKNLHS
Trigger: CGAATGCAGATTCTTCAGGCAGTCCAGACTAATGAA...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
40% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAATGCACCTTCTGCTACTaGAAACTCTATCCTAAAATG +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQCTFCY*KLYPKM
Trigger: CATTTTAGGATAGAGTTTGCAGTAGCAGAAGGTGCA...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCTGCACCTTCTGCTACTaGAAACTCTATCCTAAAATG +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFCTFCY*KLYPKM
Trigger: CATTTTAGGATAGAGTTTGCAGTAGCAGAAGGTGCA...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAAATTCTTTGCACCTTCTaGTACTGCAAACTCTATCCT +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQILCTF*YCKLYP
Trigger: AGGATAGAGTTTGCAGTAGCAGAAGGTGCAAAGAAT...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCATTCTTTGCACCTTCTaGTACTGCAAACTCTATCCT +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFILCTF*YCKLYP
Trigger: AGGATAGAGTTTGCAGTAGCAGAAGGTGCAAAGAAT...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTTTCATTACATTCTTTaGACCTTCTGCTACTGCAAA +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVFHYIL*TFCYCK
Trigger: TTTGCAGTAGCAGAAGGTGCAAAGAATGTAATGAAA...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp CTGTTTCCAGTGCTCATATTTACGCTGAAGTACAATGAGGAGCCACTTTTGAAGTTCACCAAAAAGGGATaGCTTACACTATTCACAGTT +
Preference number: 4 (lower is better)
Translates to: LFPVLIFTLKYNEEPLLKFTKKG*LTLFTV
Trigger: AACTGTGAATAGTGTAAGGCATCCCTTTTTGGTGAA...CTTCAAAAGTGGCTCCTCATTGTACTTCAGCGTAAATATGAGCACTGGAAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTCAAGAAATTCAGGAGTaGCACAAAATGTGCTTGTTC +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLQEIQE*HKMCLF
Trigger: GAACAAGCACATTTTGTGGCACTCCTGAATTTCTTG...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp CGGTTTAACCAAGTTATGGTTCCCTTCTACAGCAGACACAAAACCAAGGTGAACTCTAGACTTTGGGAATaGATACAGGTAACAATATCT +
Preference number: 4 (lower is better)
Translates to: RFNQVMVPFYSRHKTKVNSRLWE*IQVTIS
Trigger: AGATATTGTTACCTGTATGCATTCCCAAAGTCTAGA...GTTCACCTTGGTTTTGTGTCTGCTGTAGAAGGGAACCATAACTTGGTTAAACCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp CGGTTTAACCAAGTTATGGTTCCCTTCTACAGCAGACACAAAACCAAGGTGAACAATTTCTTTACAAAGTaGTTGAGCAGTCACATACAC +
Preference number: 4 (lower is better)
Translates to: RFNQVMVPFYSRHKTKVNNFFTK*LSSHIH
Trigger: GTGTATGTGACTGCTCAAGCACTTTGTAAAGAAATT...GTTCACCTTGGTTTTGTGTCTGCTGTAGAAGGGAACCATAACTTGGTTAAACCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAATTATTTGGAGTATCTaGAGTCCTTGGGCAATCTGT +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAIIWSI*SPWAIC
Trigger: ACAGATTGCCCAAGGACTCCAGATACTCCAAATAAT...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCATTAGTGCTGCTGGTTTaGATAGTGTACTATATTGAT +
Preference number: 4 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESLVLLV*IVYYID
Trigger: ATCAATATAGTACACTATCCAAACCAGCAGCACTAA...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTCAGCACAGACATCATTaGACAAGTCATCGGTTTTTA +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLQHRHH*TSHRFL
Trigger: TAAAAACCGATGACTTGTCCAATGATGTCTGTGCTG...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAAATGCAAGGTTTAAAATaGCTTGCCTGTCCTGGTATA +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQMQGLK*LACPGI
Trigger: TATACCAGGACAGGCAAGCCATTTTAAACCTTGCAT...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGAGCAAACATGCTCTTTaGTTTGGAAACATGCAAAAA +
Preference number: 4 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVSKHAL*FGNMQK
Trigger: TTTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR TCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCGTAGATATCATACTTTaGCGTGGACTTAGTGTTGGT +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSVDIIL*RGLSVG
Trigger: ACCAACACTAAGTCCACGTCAAAGTATGATATCTAC...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCAATAAAAGATGCTACTaGCCTTACAGGAGCAGAATA +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFNKRCY*PYRSRI
Trigger: TATTCTGCTCCTGTAAGGTCAGTAGCATCTTTTATT...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCTCATCCAATTTCTGCTaGACCATTGTATCTGAAAAG +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFSSNFC*TIVSEK
Trigger: CTTTTCAGATACAATGGTGCAGCAGAAATTGGATGA...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAATTCATTAGTCTGGACTaGCTGAAGAATCTGCATTCG +
Preference number: 4 (lower is better)
Translates to: GSGSRSKSNLVTVESLIEFISLD*LKNLHS
Trigger: CGAATGCAGATTCTTCAGGCAGTCCAGACTAATGAA...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCATTCACCAAAAAGGGATaGCTTACACTATTCACAGTT +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAFTKKG*LTLFTV
Trigger: AACTGTGAATAGTGTAAGGCATCCCTTTTTGGTGAA...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTGAGTGCCACAAAATGTaGTTGTTCTATCTCCATATC +
Preference number: 4 (lower is better)
Translates to: APSCIQTATVFDITVMSFECHKM*LFYLHI
Trigger: GATATGGAGATAGAACAAGCACATTTTGTGGCACTC...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCAGTATCTGGAGTCCTTaGGCAATCTGTAATATCTTC +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSSIWSP*AICNIF
Trigger: GAAGATATTACAGATTGCCCAAGGACTCCAGATACT...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCATTATTTGGAGTATCTaGAGTCCTTGGGCAATCTGT +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSIIWSI*SPWAIC
Trigger: ACAGATTGCCCAAGGACTCCAGATACTCCAAATAAT...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACTTTTGGGATGATTCTTaGGGACTTCGTTTAATCTTT +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNFWDDS*GLRLIF
Trigger: AAAGATTAAACGAAGTCCCCAAGAATCATCCCAAAA...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCTTAGTGCTGCTGGTTTaGATAGTGTACTATATTGAT +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSLVLLV*IVYYID
Trigger: ATCAATATAGTACACTATCCAAACCAGCAGCACTAA...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAATTCTCTAGGATATCTTaGCAGCCCATAAGACGAACT +
Preference number: 4 (lower is better)
Translates to: GSGSRSKSNLVTVESLIEFSRIS*QPIRRT
Trigger: AGTTCGTCTTATGGGCTGCCAAGATATCCTAGAGAA...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCCAGCACAGACATCATTaGACAAGTCATCGGTTTTTA +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSQHRHH*TSHRFL
Trigger: TAAAAACCGATGACTTGTCCAATGATGTCTGTGCTG...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTGGTTTCCAGCTAGTTTaGCCAACCACAGTATTATCG +
Preference number: 4 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFGFQLV*PTTVLS
Trigger: CGATAATACTGTGGTTGGCCAAACTAGCTGGAAACC...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACAGCAAACATGCTCTTTaGTTTGGAAACATGCAAAAA +
Preference number: 4 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNSKHAL*FGNMQK
Trigger: TTTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCT...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTTGCCAATATAAAATCTaGATCCAGTGGCCTAAAATG +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLCQYKI*IQWPKM
Trigger: CATTTTAGGCCACTGGATCCAGATTTTATATTGGCA...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCTCTCCCAAAGGATCTTaGGTAATAAACAATTTGGAA +
Preference number: 4 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSSPKGS*VINNLE
Trigger: TTCCAAATTGTTTATTACCCAAGATCCTTTGGGAGA...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCATTATTCCCAATGAAGTaGACAGTTTGCTCTGAATGT +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFALFPMK*TVCSEC
Trigger: ACATTCAGAGCAAACTGTCCACTTCATTGGGAATAA...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
3UTR CAA 72 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTaGGTTACTGTAGAATCACTTATAGAAGATAAAGTA +
Preference number: 4 (lower is better)
Translates to: AGGGSGSRSKSN*VTVESLIEDKV
Trigger: TACTTTATCTTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR TCA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTGTCCAACTTCTGACTTaGTTCATTAAATCTTGCTTG +
Preference number: 4 (lower is better)
Translates to: APSCIQTATVFDITVMSFVQLLT*FIKSCL
Trigger: CAAGCAAGATTTAATGAATCAAGTCAGAAGTTGGAC...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGTACTCGTTCTGCTCATaGAAGATGATCTGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: KTRLIHYDAFIANSFSEEYSFCS*KMIWFH
Trigger: GTGAAACCAGATCATCTTTCATGAGCAGAACGAGTA...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCATATCATCCAATTTCTaGTGCACCATTGTATCTGAA +
Preference number: 4 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFISSNF*CTIVSE
Trigger: TTCAGATACAATGGTGCAGCAGAAATTGGATGATAT...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTATATCATCCAATTTCTaGTGCACCATTGTATCTGAA +
Preference number: 4 (lower is better)
Translates to: FSWPMFTQLKLHETVSSAISSNF*CTIVSE
Trigger: TTCAGATACAATGGTGCAGCAGAAATTGGATGATAT...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCATTTCATTACATTCTTTaGACCTTCTGCTACTGCAAA +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAFHYIL*TFCYCK
Trigger: TTTGCAGTAGCAGAAGGTGCAAAGAATGTAATGAAA...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR GCA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAAAGGTTTAAAATGGCTTaGCTGTCCTGGTATATCCAA +
Preference number: 4 (lower is better)
Translates to: GSGSRSKSNLVTVESLIERFKMA*LSWYIQ
Trigger: TTGGATATACCAGGACAGGCAAGCCATTTTAAACCT...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTTACAATACTGGTGCTTaGATCTTAATTAAAACAGGC +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLYNTGA*ILIKTG
Trigger: GCCTGTTTTAATTAAGATGCAAGCACCAGTATTGTA...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CCA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCATTAGTGCTGCTGGTTTaGATAGTGTACTATATTGAT +
Preference number: 4 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFALVLLV*IVYYID
Trigger: ATCAATATAGTACACTATCCAAACCAGCAGCACTAA...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CCA 90 bp GTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTGGTATATCCAAAGTGGCAATTTTAAATaGAAAGACACGCCTTATTCA +
Preference number: 4 (lower is better)
Translates to: VKRNYARFKMACLSWYIQSGNFK*KDTPYS
Trigger: TGAATAAGGCGTGTCTTTCCATTTAAAATTGCCACT...TTGGATATACCAGGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTAAAACTACAGGCAAGTaGAAAGTCATGGTTTGTAAA +
Preference number: 4 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLKTTGK*KVMVCK
Trigger: TTTACAAACCATGACTTTCCACTTGCCTGTAGTTTT...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAATCATCCAATTTCTGCTaGACCATTGTATCTGAAAAG +
Preference number: 4 (lower is better)
Translates to: GSGSRSKSNLVTVESLIESSNFC*TIVSEK
Trigger: CTTTTCAGATACAATGGTGCAGCAGAAATTGGATGA...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCTTTCATTACATTCTTTaGACCTTCTGCTACTGCAAA +
Preference number: 4 (lower is better)
Translates to: LIHSVKRNYARFKMACLSFHYIL*TFCYCK
Trigger: TTTGCAGTAGCAGAAGGTGCAAAGAATGTAATGAAA...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTTTTTGGGATGATTCTTaGGGACTTCGTTTAATCTTT +
Preference number: 4 (lower is better)
Translates to: APSCIQTATVFDITVMSFFWDDS*GLRLIF
Trigger: AAAGATTAAACGAAGTCCCCAAGAATCATCCCAAAA...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
37% GC, longest homopolymer 8 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR TCA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTATCTTAAGTAAATGCTaGTCCTGTTTGTTTCAGCAC +
Preference number: 4 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFILSKC*SCLFQH
Trigger: GTGCTGAAACAAACAGGATCAGCATTTACTTAAGAT...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR GCA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGAAGACTCAGTACACCTaGTATAATCAGTACGTAAGA +
Preference number: 4 (lower is better)
Translates to: KTRLIHYDAFIANSFSEEKTQYT*YNQYVR
Trigger: TCTTACGTACTGATTATAGCAGGTGTACTGAGTCTT...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CCA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAATTTTGGGATGATTCTTaGGGACTTCGTTTAATCTTT +
Preference number: 4 (lower is better)
Translates to: GSGSRSKSNLVTVESLIEFWDDS*GLRLIF
Trigger: AAAGATTAAACGAAGTCCCCAAGAATCATCCCAAAA...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR GCA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGATATCATCCAATTTCTaGTGCACCATTGTATCTGAA +
Preference number: 4 (lower is better)
Translates to: KTRLIHYDAFIANSFSEEISSNF*CTIVSE
Trigger: TTCAGATACAATGGTGCAGCAGAAATTGGATGATAT...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS GCA 90 bp TCTGGGCGACGCCAGGAGCCGCCTCAAGCCTCTCCGTGCGGGCGCTaGGGCCGCGGCTGCAGCTCCTCCTGTCGCACCATTTGGCTGTCA +
Preference number: 5 (lower is better)
Translates to: SGRRQEPPQASPCGR*GRGCSSSCRTIWLS
Trigger: TGACAGCCAAATGGTGCGACAGGAGGAGCTGCAGCCGCGGCCGCAGCGCCCGCACGGAGAGGCTTGAGGCGGCTCCTGGCGTCGCCCAGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS CCA 90 bp CGTTCGGGGTTGGACGCCATTGCGCTCCGGTATGGACTCCGCACCTaGACGCGGCCGCCTCTGGCGAAGGGAGAAGGCGGGACGGGGCTC +
Preference number: 5 (lower is better)
Translates to: RSGLDAIALRYGLRT*TRPPLAKGEGGTGL
Trigger: GAGCCCCGTCCCGCCTTCTCCCTTCGCCAGAGGCGGCCGCGTCCAGGTGCGGAGTCCATACCGGAGCGCAATGGCGTCCAACCCCGAACG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000316005.11
ENST00000370521.8
CDS CCA 90 bp TTCCTCTCGCCGCCCTCACCGGACTGTTCGTCTAGTCGCTCCCTCTaGGCGACGCCAGGAGCCGCCTCAAGCCTCTCCGTGCGGGCGCTG +
Preference number: 5 (lower is better)
Translates to: FLSPPSPDCSSSRSL*ATPGAASSLSVRAL
Trigger: CAGCGCCCGCACGGAGAGGCTTGAGGCGGCTCCTGGCGTCGCCCAGAGGGAGCGACTAGACGAACAGTCCGGTGAGGGCGGCGAGAGGAA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000316005.11
ENST00000370521.8
CDS-3UTR CAA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTCCTGTCGCACCATTaGGCTGTCACCGCGTCGCAA +
Preference number: 5 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESLLSHH*AVTASQ
Trigger: TTGCGACGCGGTGACAGCCAAATGGTGCGACAGGAG...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTCGGGGTTGGACGCCATaGCGCTCCGGTATGGACTCC +
Preference number: 5 (lower is better)
Translates to: APSCIQTATVFDITVMSFRGWTP*RSGMDS
Trigger: GGAGTCCATACCGGAGCGCAATGGCGTCCAACCCCG...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp CGGTTTAACCAAGTTATGGTTCCCTTCTACAGCAGACACAAAACCAAGGTGAACGCTGTCCTGGAGCAGTaGCTGAGCTGTACCATGGAG +
Preference number: 5 (lower is better)
Translates to: RFNQVMVPFYSRHKTKVNAVLEQ*LSCTME
Trigger: CTCCATGGTACAGCTCAGCAACTGCTCCAGGACAGC...GTTCACCTTGGTTTTGTGTCTGCTGTAGAAGGGAACCATAACTTGGTTAAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGAGTAGGCACAGGAGCTaGAGGGCTGAAGGTGCCAGA +
Preference number: 5 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVSRHRS*RAEGAR
Trigger: TCTGGCACCTTCAGCCCTCAAGCTCCTGTGCCTACT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACGCTGTCCTGGAGCAGTaGCTGAGCTGTACCATGGAG +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNAVLEQ*LSCTME
Trigger: CTCCATGGTACAGCTCAGCAACTGCTCCAGGACAGC...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGCGGGGTTGGACGCCATaGCGCTCCGGTATGGACTCC +
Preference number: 5 (lower is better)
Translates to: KTRLIHYDAFIANSFSEERGWTP*RSGMDS
Trigger: GGAGTCCATACCGGAGCGCAATGGCGTCCAACCCCG...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGGCAGTGCAACTGATGTaGCTTTTGACCGTCCAGGGA +
Preference number: 5 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVAVQLM*LLTVQG
Trigger: TCCCTGGACGGTCAAAAGCAACATCAGTTGCACTGC...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCAGTAGGCACAGGAGCTaGAGGGCTGAAGGTGCCAGA +
Preference number: 5 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFSRHRS*RAEGAR
Trigger: TCTGGCACCTTCAGCCCTCAAGCTCCTGTGCCTACT...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS TCA 90 bp TCACGTGACCTGTCCAGTTCCAGTGTAAACTTCTGGTCCCATGACTaGTTGGAAATGGGTTTCCAGCTAGTTTGGCCAACCACAGTATTA +
Preference number: 5 (lower is better)
Translates to: SRDLSSSSVNFWSHD*LEMGFQLVWPTTVL
Trigger: TAATACTGTGGTTGGCCAAACTAGCTGGAAACCCATTTCCAATCAGTCATGGGACCAGAAGTTTACACTGGAACTGGACAGGTCACGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370521.8
ENST00000436111.1
CDS-3UTR CAA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCGCTGTCCTGGAGCAGTaGCTGAGCTGTACCATGGAG +
Preference number: 5 (lower is better)
Translates to: LIHSVKRNYARFKMACLSAVLEQ*LSCTME
Trigger: CTCCATGGTACAGCTCAGCAACTGCTCCAGGACAGC...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCAGACGTGGACTTAGTGTaGGTGATGCAGCAACAAGTG +
Preference number: 5 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESDVDLV*VMQQQV
Trigger: CACTTGTTGCTGCATCACCAACACTAAGTCCACGTC...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTGACGTGGACTTAGTGTaGGTGATGCAGCAACAAGTG +
Preference number: 5 (lower is better)
Translates to: GLLFLRGLLVSQLGFAVSDVDLV*VMQQQV
Trigger: CACTTGTTGCTGCATCACCAACACTAAGTCCACGTC...AGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACGCAGTGCAACTGATGTaGCTTTTGACCGTCCAGGGA +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNAVQLM*LLTVQG
Trigger: TCCCTGGACGGTCAAAAGCAACATCAGTTGCACTGC...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCAGTAGGCACAGGAGCTaGAGGGCTGAAGGTGCCAGA +
Preference number: 5 (lower is better)
Translates to: LIHSVKRNYARFKMACLSSRHRS*RAEGAR
Trigger: TCTGGCACCTTCAGCCCTCAAGCTCCTGTGCCTACT...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS TCA 90 bp AAGGTAACCCTGTCCAGTTCCAGTGTAAACTTCTGGTCCCATGACTaGTTGGAAATGGGTTTCCAGCTAGTTTGGCCAACCACAGTATTA +
Preference number: 5 (lower is better)
Translates to: KVTLSSSSVNFWSHD*LEMGFQLVWPTTVL
Trigger: TAATACTGTGGTTGGCCAAACTAGCTGGAAACCCATTTCCAATCAGTCATGGGACCAGAAGTTTACACTGGAACTGGACAGGGTTACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000370513.9
CDS-3UTR CAA 90 bp CTGTTTCCAGTGCTCATATTTACGCTGAAGTACAATGAGGAGCCACTTTTGAAGGACGTGGACTTAGTGTaGGTGATGCAGCAACAAGTG +
Preference number: 5 (lower is better)
Translates to: LFPVLIFTLKYNEEPLLKDVDLV*VMQQQV
Trigger: CACTTGTTGCTGCATCACCAACACTAAGTCCACGTC...CTTCAAAAGTGGCTCCTCATTGTACTTCAGCGTAAATATGAGCACTGGAAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCCAACTGATGTTGCTTTaGACCGTCCAGGGACATTCT +
Preference number: 5 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVQLMLL*TVQGHS
Trigger: AGAATGTCCCTGGACGGTCAAAAGCAACATCAGTTG...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACATGATCTGGTTTCACTaGGACTCCAACCAGGCAGTG +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNMIWFH*DSNQAV
Trigger: CACTGCCTGGTTGGAGTCCAAGTGAAACCAGATCAT...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCGGTGGCTTTACTTTTTaGTCCATCAGAGCGCTCCAA +
Preference number: 5 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVGGFTF*SIRALQ
Trigger: TTGGAGCGCTCTGATGGACAAAAAAGTAAAGCCACC...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACCTTCCGAAAGTATCCTaGGTTCTCGAGGTGGAGTCA +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNLPKVS*VLEVES
Trigger: TGACTCCACCTCGAGAACCAAGGATACTTTCGGAAG...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGAAATCAAGCCCCGAGTaGTATACAAACTGCCACGGT +
Preference number: 5 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVKSSPE*YTNCHG
Trigger: ACCGTGGCAGTTTGTATACAACTCGGGGCTTGATTT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCTGTAAATGCTGGAGTTaGAGGTGTCTGCTTGGCCAC +
Preference number: 5 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSCKCWS*RCLLGH
Trigger: GTGGCCAAGCAGACACCTCAAACTCCAGCATTTACA...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCAACGAGGGTCATTATTaGGAGTATCTGGAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVNEGHY*EYLESL
Trigger: CAAGGACTCCAGATACTCCAAATAATGACCCTCGTT...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGGCCTTCAATCTATTGTaGCTAGTAGAACAACGAGGG +
Preference number: 5 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVAFNLL*LVEQRG
Trigger: CCCTCGTTGTTCTACTAGCAACAATAGATTGAAGGC...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACCAACTGATGTTGCTTTaGACCGTCCAGGGACATTCT +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNQLMLL*TVQGHS
Trigger: AGAATGTCCCTGGACGGTCAAAAGCAACATCAGTTG...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCATGATCTGGTTTCACTaGGACTCCAACCAGGCAGTG +
Preference number: 5 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFMIWFH*DSNQAV
Trigger: CACTGCCTGGTTGGAGTCCAAGTGAAACCAGATCAT...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACGGGTTTCCAGCTAGTTaGGCCAACCACAGTATTATC +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNGFPAS*ANHSII
Trigger: GATAATACTGTGGTTGGCCAAACTAGCTGGAAACCC...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAAGCAGTGCAACTGATGTaGCTTTTGACCGTCCAGGGA +
Preference number: 5 (lower is better)
Translates to: GSGSRSKSNLVTVESLIEAVQLM*LLTVQG
Trigger: TCCCTGGACGGTCAAAAGCAACATCAGTTGCACTGC...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCAACAGCACAGACATCATaGGACAAGTCATCGGTTTTT +
Preference number: 5 (lower is better)
Translates to: AGGGSGSRSKSNLVTVESTAQTS*DKSSVF
Trigger: AAAAACCGATGACTTGTCCAATGATGTCTGTGCTGT...TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCACAGCACAGACATCATaGGACAAGTCATCGGTTTTT +
Preference number: 5 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVTAQTS*DKSSVF
Trigger: AAAAACCGATGACTTGTCCAATGATGTCTGTGCTGT...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCAAAACTCAGAAGCTATaGGTGGCACAGAGAGCAAAT +
Preference number: 5 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVKTQKL*VAQRAN
Trigger: ATTTGCTCTCTGTGCCACCAATAGCTTCTGAGTTTT...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACTTCCTCTATTGTCCTTaGCCGAGGAAATTAACTGGC +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNFLYCP*PRKLTG
Trigger: GCCAGTTAATTTCCTCGGCAAAGGACAATAGAGGAA...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS CCA 90 bp GGCCTTCAATCTATTGTTGCTAGTAGAACAACGAGGGTCATTATTTaGAGTATCTGGAGTCCTTGGGCAATCTGTAATATCTTCTGGATC +
Preference number: 5 (lower is better)
Translates to: GLQSIVASRTTRVII*SIWSPWAICNIFWI
Trigger: GATCCAGAAGATATTACAGATTGCCCAAGGACTCCAGATACTCCAAATAATGACCCTCGTTGTTCTACTAGCAACAATAGATTGAAGGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCAACGAGGGTCATTATTaGGAGTATCTGGAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFNEGHY*EYLESL
Trigger: CAAGGACTCCAGATACTCCAAATAATGACCCTCGTT...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGCCTTCAATCTATTGTaGCTAGTAGAACAACGAGGG +
Preference number: 5 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAAFNLL*LVEQRG
Trigger: CCCTCGTTGTTCTACTAGCAACAATAGATTGAAGGC...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp AGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCAAGGCCTTCAATCTATaGTTGCTAGTAGAACAACGA +
Preference number: 5 (lower is better)
Translates to: RVAIFKRSSCESAWFRSVKAFNL*LLVEQR
Trigger: TCGTTGTTCTACTAGCAACAATAGATTGAAGGCCTT...GACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGATTAAACTGAAACCTTaGCTGAGATCTTCTGTCCTC +
Preference number: 5 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVIKLKP*LRSSVL
Trigger: GAGGACAGAAGATCTCAGCAAAGGTTTCAGTTTAAT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GCCCCGAGTTGTATACAAACTGCCACGGTTTTTGATATTACAGTAATGTCTTTTGGTGGCTTTACTTTTTaGTCCATCAGAGCGCTCCAA +
Preference number: 5 (lower is better)
Translates to: APSCIQTATVFDITVMSFGGFTF*SIRALQ
Trigger: TTGGAGCGCTCTGATGGACAAAAAAGTAAAGCCACC...AAAAGACATTACTGTAATATCAAAAACCGTGGCAGTTTGTATACAACTCGGGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACGGAGTTTCCGATCCTTaGAAGATCCATTTGAATACA +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNGVSDP*KIHLNT
Trigger: TGTATTCAAATGGATCTTCAAAGGATCGGAAACTCC...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGATTTCATTACATTCTTaGCACCTTCTGCTACTGCAA +
Preference number: 5 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVISLHS*HLLLLQ
Trigger: TTGCAGTAGCAGAAGGTGCAAAGAATGTAATGAAAT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAACAACTGATGTTGCTTTaGACCGTCCAGGGACATTCT +
Preference number: 5 (lower is better)
Translates to: GSGSRSKSNLVTVESLIEQLMLL*TVQGHS
Trigger: AGAATGTCCCTGGACGGTCAAAAGCAACATCAGTTG...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGATGATCTGGTTTCACTaGGACTCCAACCAGGCAGTG +
Preference number: 5 (lower is better)
Translates to: KTRLIHYDAFIANSFSEEMIWFH*DSNQAV
Trigger: CACTGCCTGGTTGGAGTCCAAGTGAAACCAGATCAT...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCATGCCACAAAATGTGCTaGTTCTATCTCCATATCCCA +
Preference number: 5 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFACHKMC*FYLHIP
Trigger: TGGGATATGGAGATAGAACAAGCACATTTTGTGGCA...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGACCAATCTACAGCCCTaGTATAAGAAGTTTCTGTTA +
Preference number: 5 (lower is better)
Translates to: EGLLFLRGLLVSQLGFAVTNLQP*YKKFLL
Trigger: TAACAGAAACTTCTTATACAAGGGCTGTAGATTGGT...CACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTCTTCCGAAAGTATCCTaGGTTCTCGAGGTGGAGTCA +
Preference number: 5 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFLPKVS*VLEVES
Trigger: TGACTCCACCTCGAGAACCAAGGATACTTTCGGAAG...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp ATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTCATATTTACGCTTGGCAAGCAGCTCTGTaGGAAAGCTATAAGCCTGTT +
Preference number: 5 (lower is better)
Translates to: MFTQLKLHETVSSAHIYAWQAAL*ESYKPV
Trigger: AACAGGCTTATAGCTTTCCAACAGAGCTGCTTGCCA...AGCGTAAATATGAGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACCTCTTAATTCGATCCTaGATATCATCCAATTTCTGC +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNLLIRS*ISSNFC
Trigger: GCAGAAATTGGATGATATCAAGGATCGAATTAAGAG...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAAAACGAGGGTCATTATTaGGAGTATCTGGAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: GSGSRSKSNLVTVESLIENEGHY*EYLESL
Trigger: CAAGGACTCCAGATACTCCAAATAATGACCCTCGTT...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGGAGTTTCCGATCCTTaGAAGATCCATTTGAATACA +
Preference number: 5 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFGVSDP*KIHLNT
Trigger: TGTATTCAAATGGATCTTCAAAGGATCGGAAACTCC...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGGGGTTTCCAGCTAGTTaGGCCAACCACAGTATTATC +
Preference number: 5 (lower is better)
Translates to: KTRLIHYDAFIANSFSEEGFPAS*ANHSII
Trigger: GATAATACTGTGGTTGGCCAAACTAGCTGGAAACCC...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTGGGTTTCCAGCTAGTTaGGCCAACCACAGTATTATC +
Preference number: 5 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFGFPAS*ANHSII
Trigger: GATAATACTGTGGTTGGCCAAACTAGCTGGAAACCC...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp CTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCAACAAGCAAACATGCTCTTaGGTTTGGAAACATGCAAAA +
Preference number: 5 (lower is better)
Translates to: LFLRGLLVSQLGFAVSSNKQTCS*VWKHAK
Trigger: TTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCTT...GTTGCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCCCACAGACGGATCCTTaGAAGAGTTGTATAAAATAT +
Preference number: 5 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSPQTDP*KSCIKY
Trigger: ATATTTTATACAACTCTTCAAAGGATCCGTCTGTGG...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCTTCTTTACAAAGTGCTaGAGCAGTCACATACACATA +
Preference number: 5 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSFFTKC*SSHIHI
Trigger: TATGTGTATGTGACTGCTCAAGCACTTTGTAAAGAA...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp TTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAGTGTCTAGCTATTCATTTGCCTTTTaGAGAAGCCAGGTCCTAAAT +
Preference number: 5 (lower is better)
Translates to: LLFLRGLLVSQLGFAVSSYSFAF*RSQVLN
Trigger: ATTTAGGACCTGGCTTCTCAAAAAGGCAAATGAATA...GCTAGACACTGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGGCCTTCAATCTATTGTaGCTAGTAGAACAACGAGGG +
Preference number: 5 (lower is better)
Translates to: KTRLIHYDAFIANSFSEEAFNLL*LVEQRG
Trigger: CCCTCGTTGTTCTACTAGCAACAATAGATTGAAGGC...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCGGAGTTTCCGATCCTTaGAAGATCCATTTGAATACA +
Preference number: 5 (lower is better)
Translates to: LIHSVKRNYARFKMACLSGVSDP*KIHLNT
Trigger: TGTATTCAAATGGATCTTCAAAGGATCGGAAACTCC...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp AATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCGCAATTTCATTACATTCTTaGCACCTTCTGCTACTGCAA +
Preference number: 5 (lower is better)
Translates to: NEGLLFLRGLLVSQLGFAISLHS*HLLLLQ
Trigger: TTGCAGTAGCAGAAGGTGCAAAGAATGTAATGAAAT...TGCGAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS-3UTR CAA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTAAGCAAACATGCTCTTaGGTTTGGAAACATGCAAAA +
Preference number: 5 (lower is better)
Translates to: FSWPMFTQLKLHETVSSAKQTCS*VWKHAK
Trigger: TTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCTT...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTACCAATCTACAGCCCTaGTATAAGAAGTTTCTGTTA +
Preference number: 5 (lower is better)
Translates to: FSWPMFTQLKLHETVSSATNLQP*YKKFLL
Trigger: TAACAGAAACTTCTTATACAAGGGCTGTAGATTGGT...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp TTTTCATGGCCGATGTTCACTCAACTTAAACTCCATGAAACTGTTTCCAGTGCTACAGGTAACAATATCTaGGTTCGGCTGATTAAAAGT +
Preference number: 5 (lower is better)
Translates to: FSWPMFTQLKLHETVSSATGNNI*VRLIKS
Trigger: ACTTTTAATCAGCCGAACCAAGATATTGTTACCTGT...AGCACTGGAAACAGTTTCATGGAGTTTAAGTTGAGTGAACATCGGCCATGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp GCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTGGTTTCTGGTTACTTAACAGCTaGCTATTCCTGAGGTATAAT +
Preference number: 5 (lower is better)
Translates to: ANEGLLFLRGLLVSQLGFWLLNS*LFLRYN
Trigger: ATTATACCTCAGGAATAGCAAGCTGTTAAGTAACCA...GAAACCAAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp CAGAGAGCAAATGAAGGGTTGCTATTTTTAAGAGGTCTTCTTGTGAGTCAGCTTTTCTCCCAAAGGATCTaGGGTAATAAACAATTTGGA +
Preference number: 5 (lower is better)
Translates to: QRANEGLLFLRGLLVSQLFSQRI*GNKQFG
Trigger: TCCAAATTGTTTATTACCCAAGATCCTTTGGGAGAA...AAGCTGACTCACAAGAAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCTCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS TCA 90 bp ATTACATTCTTTGCACCTTCTGCTACTGCAAACTCTATCCTAAAATaGTGCCTTAATTCTTCCATCCGAAGTTCAAGAGGACTTATCACA +
Preference number: 5 (lower is better)
Translates to: ITFFAPSATANSILK*CLNSSIRSSRGLIT
Trigger: TGTGATAAGTCCTCTTGAACTTCGGATGGAAGAATTAAGGCATCATTTTAGGATAGAGTTTGCAGTAGCAGAAGGTGCAAAGAATGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS GCA 90 bp TATAAGAAGTTTCTGTTAATACTTCTGGGGCAAGAAATTCAGGAGTaGCACAAAATGTGCTTGTTCTATCTCCATATCCCATTCCTTCTT +
Preference number: 5 (lower is better)
Translates to: YKKFLLILLGQEIQE*HKMCLFYLHIPFLL
Trigger: AAGAAGGAATGGGATATGGAGATAGAACAAGCACATTTTGTGGCACTCCTGAATTTCTTGCCCCAGAAGTATTAACAGAAACTTCTTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000370513.9
ENST00000370521.8
ENST00000449189.1
CDS-3UTR CAA 90 bp GGTTCAGGCTCAAGATCAAAGTCCAATTTGGTTACTGTAGAATCACTTATAGAAAAGGCCTTCAATCTATaGTTGCTAGTAGAACAACGA +
Preference number: 5 (lower is better)
Translates to: GSGSRSKSNLVTVESLIEKAFNL*LLVEQR
Trigger: TCGTTGTTCTACTAGCAACAATAGATTGAAGGCCTT...TTCTATAAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp CTAATTCATTCAGTGAAGAGGAATTATGCAAGGTTTAAAATGGCTTGCCTGTCCATTTCATTACATTCTTaGCACCTTCTGCTACTGCAA +
Preference number: 5 (lower is better)
Translates to: LIHSVKRNYARFKMACLSISLHS*HLLLLQ
Trigger: TTGCAGTAGCAGAAGGTGCAAAGAATGTAATGAAAT...GGACAGGCAAGCCATTTTAAACCTTGCATAATTCCTCTTCACTGAATGAATTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTAAGGCCTTCAATCTATaGTTGCTAGTAGAACAACGA +
Preference number: 5 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFKAFNL*LLVEQR
Trigger: TCGTTGTTCTACTAGCAACAATAGATTGAAGGCCTT...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTATTAAACTGAAACCTTaGCTGAGATCTTCTGTCCTC +
Preference number: 5 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFIKLKP*LRSSVL
Trigger: GAGGACAGAAGATCTCAGCAAAGGTTTCAGTTTAAT...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS-3UTR CAA 90 bp AAGACACGCCTTATTCACTATGATGCTTTTATTGCTAATTCATTCAGTGAAGAGCTCTTAATTCGATCCTaGATATCATCCAATTTCTGC +
Preference number: 5 (lower is better)
Translates to: KTRLIHYDAFIANSFSEELLIRS*ISSNFC
Trigger: GCAGAAATTGGATGATATCAAGGATCGAATTAAGAG...CTCTTCACTGAATGAATTAGCAATAAAAGCATCATAGTGAATAAGGCGTGTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS-3UTR CAA 90 bp GTACACTGTGTAGTTACGAAATGCTGTCAGTTTTTAATGCTAAGAGCCTATTTTAGAGCAAATGAAGGGTaGCTATTTTTAAGAGGTCTT +
Preference number: 5 (lower is better)
Translates to: VHCVVTKCCQFLMLRAYFRANEG*LFLRGL
Trigger: AAGACCTCTTAAAAATAGCAACCCTTCATTTGCTCT...AAAATAGGCTCTTAGCATTAAAAACTGACAGCATTTCGTAACTACACAGTGTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000370521.8
CDS GCA 72 bp CGCCAGGAGCCGCCTCAAGCCTCTCCGTGCGGGCGCTaGGGCCGCGGCTGCAGCTCCTCCTGTCGCACCATT +
Preference number: 6 (lower is better)
Translates to: RQEPPQASPCGR*GRGCSSSCRTI
Trigger: AATGGTGCGACAGGAGGAGCTGCAGCCGCGGCCGCAGCGCCCGCACGGAGAGGCTTGAGGCGGCTCCTGGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316005.11
CDS CCA 72 bp TCCGGTATGGACTCCGCACCTGGACGCGGCCGCCTCTaGCGAAGGGAGAAGGCGGGACGGGGCTCGGGGTGG +
Preference number: 6 (lower is better)
Translates to: SGMDSAPGRGRL*RREKAGRGSGW
Trigger: CCACCCCGAGCCCCGTCCCGCCTTCTCCCTTCGCCAGAGGCGGCCGCGTCCAGGTGCGGAGTCCATACCGGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000316005.11
ENST00000370521.8
CDS CCA 72 bp CCCCCGTTCGGGGTTGGACGCCATTGCGCTCCGGTATaGACTCCGCACCTGGACGCGGCCGCCTCTGGCGAA +
Preference number: 6 (lower is better)
Translates to: PPFGVGRHCAPV*TPHLDAAASGE
Trigger: TTCGCCAGAGGCGGCCGCGTCCAGGTGCGGAGTCCATACCGGAGCGCAATGGCGTCCAACCCCGAACGGGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000316005.11
ENST00000370521.8
CDS CCA 72 bp CCGCCCTCACCGGACTGTTCGTCTAGTCGCTCCCTCTaGGCGACGCCAGGAGCCGCCTCAAGCCTCTCCGTG +
Preference number: 6 (lower is better)
Translates to: PPSPDCSSSRSL*ATPGAASSLSV
Trigger: CACGGAGAGGCTTGAGGCGGCTCCTGGCGTCGCCCAGAGGGAGCGACTAGACGAACAGTCCGGTGAGGGCGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000316005.11
ENST00000370521.8
CDS CCA 72 bp TTGGACGCCATTGCGCTCCGGTATGGACTCCGCACCTaGACGCGGCCGCCTCTGGCGAAGGGAGAAGGCGGG +
Preference number: 6 (lower is better)
Translates to: LDAIALRYGLRT*TRPPLAKGEGG
Trigger: CCCGCCTTCTCCCTTCGCCAGAGGCGGCCGCGTCCAGGTGCGGAGTCCATACCGGAGCGCAATGGCGTCCAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000316005.11
ENST00000370521.8
CDS CCA 72 bp AAAACAACTAGGGATTCATGGAGGCGCAGCCCCTGCTaGAGGCGCGGCTTATTCCGTCCGGTTCATCGAGAG +
Preference number: 6 (lower is better)
Translates to: KTTRDSWRRSPC*RRGLFRPVHRE
Trigger: CTCTCGATGAACCGGACGGAATAAGCCGCGCCTCCAGCAGGGGCTGCGCCTCCATGAATCCCTAGTTGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000316005.11
ENST00000370521.8
CDS CAA 72 bp TACATCAACCACTGGCACTGTAGTAGGCACAGGAGCTaGAGGGCTGAAGGTGCCAGAATGATTTACTGTAGG +
Preference number: 6 (lower is better)
Translates to: YINHWHCSRHRS*RAEGARMIYCR
Trigger: CCTACAGTAAATCATTCTGGCACCTTCAGCCCTCAAGCTCCTGTGCCTACTACAGTGCCAGTGGTTGATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS TCA 72 bp CTGTCCAGTTCCAGTGTAAACTTCTGGTCCCATGACTaGTTGGAAATGGGTTTCCAGCTAGTTTGGCCAACC +
Preference number: 6 (lower is better)
Translates to: LSSSSVNFWSHD*LEMGFQLVWPT
Trigger: GGTTGGCCAAACTAGCTGGAAACCCATTTCCAATCAGTCATGGGACCAGAAGTTTACACTGGAACTGGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
ENST00000436111.1
CDS CCA 72 bp GCTTTTGACCGTCCAGGGACATTCTCTAGGATATCTTaGCAGCCCATAAGACGAACTTCCAAAGTACCTGTT +
Preference number: 6 (lower is better)
Translates to: AFDRPGTFSRIS*QPIRRTSKVPV
Trigger: AACAGGTACTTTGGAAGTTCGTCTTATGGGCTGCCAAGATATCCTAGAGAATGTCCCTGGACGGTCAAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS CAA 72 bp GCTGGAGGAGGTTCAGGCTCAAGATCAAAGTCCAATTaGGTTACTGTAGAATCACTAGCTGGAGGTGCTAGT +
Preference number: 6 (lower is better)
Translates to: AGGGSGSRSKSN*VTVESLAGGAS
Trigger: ACTAGCACCTCCAGCTAGTGATTCTACAGTAACCAAATTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000370513.9
ENST00000370521.8
CDS TCA 72 bp ACTTCTATTTTTGTCTTGCTGTCCTGGAGCAGTTGCTaGGCTGTACCATGGAGTTTCCGATCCTTTGAAGAT +
Preference number: 6 (lower is better)
Translates to: TSIFVLLSWSSC*AVPWSFRSFED
Trigger: ATCTTCAAAGGATCGGAAACTCCATGGTACAGCTCAGCAACTGCTCCAGGACAGCAAGACAAAAATAGAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS CAA 90 bp TCTTCTCGTCCTCTTATGGTAGGTATAAATGGTGGCTTTACTTTTTaGTCCATCAGAGCGCTCCAATCAATTAGCCGGAAAAATGGGTGC +
Preference number: 6 (lower is better)
Translates to: SSRPLMVGINGGFTF*SIRALQSISRKNGC
Trigger: GCACCCATTTTTCCGGCTAATTGATTGGAGCGCTCTGATGGACAAAAAAGTAAAGCCACCATTTATACCTACCATAAGAGGACGAGAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000370513.9
ENST00000370521.8
ENST00000495119.1
CDS CCA 72 bp GCTAGTAGAACAACGAGGGTCATTATTTGGAGTATCTaGAGTCCTTGGGCAATCTGTAATATCTTCTGGATC +
Preference number: 6 (lower is better)
Translates to: ASRTTRVIIWSI*SPWAICNIFWI
Trigger: GATCCAGAAGATATTACAGATTGCCCAAGGACTCCAGATACTCCAAATAATGACCCTCGTTGTTCTACTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS CAA 72 bp CCTCTTATGGTAGGTATAAATGGTGGCTTTACTTTTTaGTCCATCAGAGCGCTCCAATCAATTAGCCGGAAA +
Preference number: 6 (lower is better)
Translates to: PLMVGINGGFTF*SIRALQSISRK
Trigger: TTTCCGGCTAATTGATTGGAGCGCTCTGATGGACAAAAAAGTAAAGCCACCATTTATACCTACCATAAGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000370513.9
ENST00000370521.8
ENST00000495119.1
CDS TCA 72 bp TTTGCACCTTCTGCTACTGCAAACTCTATCCTAAAATaGTGCCTTAATTCTTCCATCCGAAGTTCAAGAGGA +
Preference number: 6 (lower is better)
Translates to: FAPSATANSILK*CLNSSIRSSRG
Trigger: TCCTCTTGAACTTCGGATGGAAGAATTAAGGCATCATTTTAGGATAGAGTTTGCAGTAGCAGAAGGTGCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS GCA 72 bp TTTCTGTTAATACTTCTGGGGCAAGAAATTCAGGAGTaGCACAAAATGTGCTTGTTCTATCTCCATATCCCA +
Preference number: 6 (lower is better)
Translates to: FLLILLGQEIQE*HKMCLFYLHIP
Trigger: TGGGATATGGAGATAGAACAAGCACATTTTGTGGCACTCCTGAATTTCTTGCCCCAGAAGTATTAACAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000370513.9
ENST00000370521.8
ENST00000449189.1
CDS CCA 72 bp TCTATTGTTGCTAGTAGAACAACGAGGGTCATTATTTaGAGTATCTGGAGTCCTTGGGCAATCTGTAATATC +
Preference number: 6 (lower is better)
Translates to: SIVASRTTRVII*SIWSPWAICNI
Trigger: GATATTACAGATTGCCCAAGGACTCCAGATACTCCAAATAATGACCCTCGTTGTTCTACTAGCAACAATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS TCA 72 bp ACTAGCCTTCCCCAAGTGGCAATATTAATATTCATTTaGGGAGCTCTGAGAAATGTTTTGCCTTGTTGCTTT +
Preference number: 6 (lower is better)
Translates to: TSLPQVAILIFI*GALRNVLPCCF
Trigger: AAAGCAACAAGGCAAAACATTTCTCAGAGCTCCTCAAATGAATATTAATATTGCCACTTGGGGAAGGCTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS CAA 72 bp CTGTACCATGGAGTTTCCGATCCTTTGAAGATCCATTaGAATACATCTGTATCATATTCTCTGCACCTTGTT +
Preference number: 6 (lower is better)
Translates to: LYHGVSDPLKIH*NTSVSYSLHLV
Trigger: AACAAGGTGCAGAGAATATGATACAGATGTATTCAAATGGATCTTCAAAGGATCGGAAACTCCATGGTACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8
CDS TCA 72 bp GCATTATCAAAAGCCAATTCATTAGTCTGGACTGCCTaGAGAATCTGCATTCGTATGACTTCTATTTTTGTC +
Preference number: 6 (lower is better)
Translates to: ALSKANSLVWTA*RICIRMTSIFV
Trigger: GACAAAAATAGAAGTCATACGAATGCAGATTCTTCAGGCAGTCCAGACTAATGAATTGGCTTTTGATAATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000316005.11
ENST00000370513.9
ENST00000370521.8