Pregenerated sensors for PFDN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000113068Ensembl transcript IDs: ENST00000261813.9, ENST00000507185.1, ENST00000510217.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTTTGGCCCACCTGGGCTaGGATGAGCCAGCTGGATCA | + |
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Preference number: 2 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVLAHLG*DEPAGS Trigger: TGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAA...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| 3UTR-3UTR CCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTAATAATTGGCCCACCTaGGCTGGGATGAGCCAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVNNWPT*AGMSQL Trigger: CAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATT...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| 3UTR-3UTR GCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTTCTGTTCCATCCCTCTaGTCAAGAAAACCAGGCTTA | + |
|
Preference number: 2 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVSVPSL*SRKPGL Trigger: TAAGCCTGGTTTTCTTGAGCAGAGGGATGGAACAGA...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| 3UTR-3UTR CCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTGCTGTGTTTGACAACTaGCTTGCAACAAAATTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVAVFDN*LATKFL Trigger: CAAGAATTTTGTTGCAAGCCAGTTGTCAAACACAGC...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| 3UTR-3UTR TCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTAAAATTCTTGAAAATTaGATAATTGGCCCACCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVKILEN*IIGPPG Trigger: CCCAGGTGGGCCAATTATTCAATTTTCAAGAATTTT...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| CDS-3UTR CCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTCGGGGGCGGCCATCTTaGTGCACTGTAAGCGCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVRGRPS*CTVSAC Trigger: GCAGGCGCTTACAGTGCACCAAGATGGCCGCCCCCG...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| CDS-3UTR GCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTGGGCGGCCATCTTGGTaGACTGTAAGCGCCTGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVGRPSW*TVSACA Trigger: TGCGCAGGCGCTTACAGTGCACCAAGATGGCCGCCC...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| CDS-3UTR TCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTTGGCTTGAAGCTCTGTaGAGGCCTTCTTCAGCTCTA | + |
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Preference number: 4 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVWLEAL*RPSSAL Trigger: TAGAGCTGAAGAAGGCCTTCACAGAGCTTCAAGCCA...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000261813.9 |
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| CDS-3UTR TCA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTTATAATGGCTGTGTTTaGCAACTGGCTTGCAACAAA | + |
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Preference number: 4 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVYNGCV*QLACNK Trigger: TTTGTTGCAAGCCAGTTGTCAAACACAGCCATTATA...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| CDS-3UTR CAA 90 bp | AAATTGAATAATTGGCCCACCTGGGCTGGGATGAGCCAGCTGGATCACACCGTTACGGGGGCGGCCATCTaGGTGCACTGTAAGCGCCTG | + |
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Preference number: 5 (lower is better) Translates to: KLNNWPTWAGMSQLDHTVTGAAI*VHCKRL Trigger: CAGGCGCTTACAGTGCACCAAGATGGCCGCCCCCGT...AACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000261813.9 ENST00000510217.1 |
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| CDS CCA 72 bp | CCTTCTTCAGCTCTAGATCCACGGGGGCGGCCATCTTaGTGCACTGTAAGCGCCTGCGCAGTGGGAGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: PSSALDPRGRPS*CTVSACAVGVG Trigger: TCCAACTCCCACTGCGCAGGCGCTTACAGTGCACCAAGATGGCCGCCCCCGTGGATCTAGAGCTGAAGAAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000510217.1 |
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| CDS CAA 72 bp | ACCTTCTTCAGCTCTAGATCCACGGGGGCGGCCATCTaGGTGCACTGTAAGCGCCTGCGCAGTGGGAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: TFFSSRSTGAAI*VHCKRLRSGSW Trigger: CCAACTCCCACTGCGCAGGCGCTTACAGTGCACCAAGATGGCCGCCCCCGTGGATCTAGAGCTGAAGAAGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000510217.1 |
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| CDS GCA 72 bp | AGATCCTCTAAAATTTATCATTATTACCCACTCTCCTaGCCATCCACCACAATCCACTACACAAGTGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: RSSKIYHYYPLS*PSTTIHYTSVV Trigger: AACAACACTTGTGTAGTGGATTGTGGTGGATGGGCAGGAGAGTGGGTAATAATGATAAATTTTAGAGGATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507185.1 |
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