Pregenerated sensors for PDLIM1 (Homo sapiens)

Ensembl gene IDs: ENSG00000107438

Ensembl transcript IDs: ENST00000492511.1, ENST00000493949.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGGAGAAGGCCCTTGACTCTCGGGATCCAGTTGAGGAAGATCTTATaGACACCTGGGTGTCTCCTTATGGCTGAACCACAGGTAACAGGT	+
Preference number: 5 (lower is better) Translates to: WRRPLTLGIQLRKIL*TPGCLLMAEPQVTG Trigger: ACCTGTTACCTGTGGTTCAGCCATAAGGAGACACCCAGGTGTTCATAAGATCTTCCTCAACTGGATCCCGAGAGTCAAGGGCCTTCTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493949.1
CDS TCA 90 bp	CCAGTTGAGGAAGATCTTATGAACACCTGGGTGTCTCCTTATGGCTaGACCACAGGTAACAGGTTCTTCAAGGCACCAAACCAGGACACA	+
Preference number: 5 (lower is better) Translates to: PVEEDLMNTWVSPYG*TTGNRFFKAPNQDT Trigger: TGTGTCCTGGTTTGGTGCCTTGAAGAACCTGTTACCTGTGGTTCAGCCATAAGGAGACACCCAGGTGTTCATAAGATCTTCCTCAACTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493949.1
CDS TCA 72 bp	CCCTTGACTCTCGGGATCCAGTTGAGGAAGATCTTATaGACACCTGGGTGTCTCCTTATGGCTGAACCACAG	+
Preference number: 6 (lower is better) Translates to: PLTLGIQLRKIL*TPGCLLMAEPQ Trigger: CTGTGGTTCAGCCATAAGGAGACACCCAGGTGTTCATAAGATCTTCCTCAACTGGATCCCGAGAGTCAAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493949.1
CDS TCA 72 bp	GAAGATCTTATGAACACCTGGGTGTCTCCTTATGGCTaGACCACAGGTAACAGGTTCTTCAAGGCACCAAAC	+
Preference number: 6 (lower is better) Translates to: EDLMNTWVSPYG*TTGNRFFKAPN Trigger: GTTTGGTGCCTTGAAGAACCTGTTACCTGTGGTTCAGCCATAAGGAGACACCCAGGTGTTCATAAGATCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493949.1
CDS CAA 72 bp	ACAGGTTCTTCAAGGCACCAAACCAGGACACACAAGTaGGGTCCTAAACCTCAGTATCTGATGCAGTTTTCA	+
Preference number: 6 (lower is better) Translates to: TGSSRHQTRTHK*GPKPQYLMQFS Trigger: TGAAAACTGCATCAGATACTGAGGTTTAGGACCCAACTTGTGTGTCCTGGTTTGGTGCCTTGAAGAACCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493949.1
CDS GCA 72 bp	GAGGAAAACACTGTCATTGGCCAGGAAGGGCAGAATTaGATAAGTATCACTCAGCTCTTCAGAACCACTTAT	+
Preference number: 6 (lower is better) Translates to: EENTVIGQEGQN*ISITQLFRTTY Trigger: ATAAGTGGTTCTGAAGAGCTGAGTGATACTTATGCAATTCTGCCCTTCCTGGCCAATGACAGTGTTTTCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492511.1

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