RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCED1A (Homo sapiens)

Ensembl gene IDs: ENSG00000132635

Ensembl transcript IDs: ENST00000356872.7, ENST00000360652.7, ENST00000439542.1, ENST00000448755.5, ENST00000474714.5, ENST00000487501.2

Found 174 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTaGCAGGCAGGCCCTGAAGGGCCATTGGCACATCCAGTCCCAGCC +
Preference number: 1 (lower is better)
Translates to: RTIPGIADTLAQYLR*QAGPEGPLAHPVPA
Trigger: GGCTGGGACTGGATGTGCCAATGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
3UTR-3UTR TCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTAGTGCCAGGCAGGCCCTaGAGGGCCATTGGCACATCC +
Preference number: 2 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVVPGRP*RAIGTS
Trigger: GGATGTGCCAATGGCCCTTCAGGGCCTGCCTGGCAC...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
3UTR-3UTR TCA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCGTGCCAGGCAGGCCCTaGAGGGCCATTGGCACATCC +
Preference number: 2 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSVPGRP*RAIGTS
Trigger: GGATGTGCCAATGGCCCTTCAGGGCCTGCCTGGCAC...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
3UTR-3UTR TCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACGTGCCAGGCAGGCCCTaGAGGGCCATTGGCACATCC +
Preference number: 2 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYVPGRP*RAIGTS
Trigger: GGATGTGCCAATGGCCCTTCAGGGCCTGCCTGGCAC...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
3UTR TCA 72 bp CACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTaGAGGGCCATTGGCACATCCAGTCCCAGCCCAAGA +
Preference number: 3 (lower is better)
Translates to: HPSPVPEVPGRP*RAIGTSSPSPR
Trigger: TCTTGGGCTGGGACTGGATGTGCCAATGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
3UTR-3UTR CAA 90 bp TGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCGGCCCTGAAGGGCCATaGGCACATCCAGTCCCAGCC +
Preference number: 3 (lower is better)
Translates to: WTRTIPGIADTLAQYLRCGPEGP*AHPVPA
Trigger: GGCTGGGACTGGATGTGCCAATGGCCCTTCAGGGCC...GCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
3UTR-3UTR CAA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTGGCCCTGAAGGGCCATaGGCACATCCAGTCCCAGCC +
Preference number: 3 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPGPEGP*AHPVPA
Trigger: GGCTGGGACTGGATGTGCCAATGGCCCTTCAGGGCC...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCAAGCCCAGGTACGGGCTaGGGTCTCGGGGCGGCAGCC +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPSPGTG*GLGAAA
Trigger: GGCTGCCGCCCCGAGACCCCAGCCCGTACCTGGGCT...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCATGTCACTACTGGCGCTaGGGTCCGCCCCGCGCCGGC +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPCHYWR*GPPRAG
Trigger: GCCGGCGCGGGGCGGACCCCAGCGCCAGTAGTGACA...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCATGCTCGCCCGCCGGCTaGAGTCTCCCGGCGGCGTTC +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPCSPAG*SLPAAF
Trigger: GAACGCCGCCGGGAGACTCCAGCCGGCGGGCGAGCA...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCACGTGGCATCCCCCGGTaGACCACTGGGCCCCAGTGC +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPRGIPR*TTGPQC
Trigger: GCACTGGGGCCCAGTGGTCCACCGGGGGATGCCACG...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCACAGGTTAGCCGTCGGTaGACAGCCCAGCGCCCAGCG +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPQVSRR*TAQRPA
Trigger: CGCTGGGCGCTGGGCTGTGCACCGACGGCTAACCTG...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCAGCCCCGCAGAGACCGTaGGTCCAGGTTAGCCGTCGG +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPAPQRP*VQVSRR
Trigger: CCGACGGCTAACCTGGACCCACGGTCTCTGCGGGGC...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR GCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCATACTGTGTCCCGTTGTaGAGCTCGCCCAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPYCVPL*SSPSWP
Trigger: GGGCCAGCTGGGCGAGCTGCACAACGGGACACAGTA...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCATGGCGGTGTGCATGCTaGTCCCAGTGGACACCATCC +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPWRCAC*SQWTPS
Trigger: GGATGGTGTCCACTGGGACCAGCATGCACACCGCCA...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCAGTGCTCCCCGAAGTCTaGGGTCTGCCTATGGCTTCC +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPVLPEV*GLPMAS
Trigger: GGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCAC...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCAATTAGGGCCAGGGATTaGAGGTGGCAGAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPIRARD*RWQRAR
Trigger: CCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAAT...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp ACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCGCACAGCCGCCTTTaGGCAGGGAGCCGGGCCTTC +
Preference number: 4 (lower is better)
Translates to: TRTIPGIADTLAQYLRCQAHSRL*AGSRAF
Trigger: GAAGGCCCGGCTCCCTGCCCAAAGGCGGCTGTGCGC...CTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR TCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGACCCATGTCCCGCCCTaGGCGACCCCCAGTGCCCGA +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLTHVPP*ATPSAR
Trigger: TCGGGCACTGGGGGTCGCTCAGGGCGGGACATGGGT...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR GCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCATTGTTGTGTAGCAGCTaGTGGACTTCCGAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPLLCSS*WTSEAW
Trigger: CCAGGCCTCGGAAGTCCAGCAGCTGCTACACAACAA...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCGTGGCATCCCCCGGTaGACCACTGGGCCCCAGTGC +
Preference number: 4 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVRGIPR*TTGPQC
Trigger: GCACTGGGGCCCAGTGGTCCACCGGGGGATGCCACG...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCAACTGCATGCCGGAAGTaGAAGTGGAGGTCTAGGACA +
Preference number: 4 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPTACRK*KWRSRT
Trigger: TGTCCTAGACCTCCACTTTCACTTCCGGCATGCAGT...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGCAAGGCGATGGAGGTaGCCGCCACAGGGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEARRWR*PPQGAG
Trigger: TCCTGCGCCCTGTGGCGGCCACCTCCATCGCCTTGC...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTAATGCGAGCGTCGCTGTaGCCCCGACGGCGCCTCAGG +
Preference number: 4 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVMRASL*PRRRLR
Trigger: CCTGAGGCGCCGTCGGGGCCACAGCGACGCTCGCAT...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR TCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGGTCTCTCTGAGTGTCTaGGCCGCTGCCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLVSLSV*AAACRA
Trigger: GGCCCTGCAGGCAGCGGCTCAGACACTCAGAGAGAC...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTCTCTCTGAGTGTCTaGGCCGCTGCCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEVSLSV*AAACRA
Trigger: GGCCCTGCAGGCAGCGGCTCAGACACTCAGAGAGAC...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGTCGGCCAGTCGGTTCTaGAAAGCTCCCGCCCCGCAG +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLSASRF*KAPAPQ
Trigger: CTGCGGGGCGGGAGCTTTGCAGAACCGACTGGCCGA...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR GCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGGGGAGCAAGGCCAGGTaGTCCCCGAAGTCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLGSKAR*SPKSGV
Trigger: GACCCCAGACTTCGGGGAGCACCTGGCCTTGCTCCC...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGCTCTCCCCGAGCGTCTaGCACTTAGCGCACAGCCGC +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPELSPSV*HLAHSR
Trigger: GCGGCTGTGCGCTAAGTGGCAGACGCTCGGGGAGAG...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGGGGAAAGCAAGGCGATaGAGGTGGCCGCCACAGGGC +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLGKARR*RWPPQG
Trigger: GCCCTGTGGCGGCCACCTCCATCGCCTTGCTTTCCC...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp TGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGGGCTGGAGCTCTaGCAGGAGGAAACCCCCAGT +
Preference number: 4 (lower is better)
Translates to: WTRTIPGIADTLAQYLRCQGLEL*QEETPS
Trigger: ACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTG...GCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCCCCGGTGGACCACTaGGCCCCAGTGCTGACCATG +
Preference number: 4 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVPPVDH*APVLTM
Trigger: CATGGTCAGCACTGGGGCCCAGTGGTCCACCGGGGG...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGACTGGGCCCCAGTGCTaGCCATGGGGATTAGGGCCA +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLTGPQC*PWGLGP
Trigger: TGGCCCTAATCCCCATGGTCAGCACTGGGGCCCAGT...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGACTGGGCCCCAGTGCTaGCCATGGGGATTAGGGCCA +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPETGPQC*PWGLGP
Trigger: TGGCCCTAATCCCCATGGTCAGCACTGGGGCCCAGT...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGATGCTCAGATCTCGCTaGGGGAGGCAGCTCGCGGGT +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLMLRSR*GRQLAG
Trigger: ACCCGCGAGCTGCCTCCCTCAGCGAGATCTGAGCAT...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CCA 90 bp ACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGTCCGAGGCCTGGAAGTaGACCATGTCGCTTCGCAGC +
Preference number: 4 (lower is better)
Translates to: TRTIPGIADTLAQYLRCQSEAWK*TMSLRS
Trigger: GCTGCGAAGCGACATGGTCCACTTCCAGGCCTCGGA...CTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGCAGGGGCTGGAGCTCTaGCAGGAGGAAACCCCCAGT +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEQGLEL*QEETPS
Trigger: ACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTG...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGGAGCCTGCCAGGGGCTaGAGCTCTGGCAGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLEPARG*SSGRRK
Trigger: TTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTC...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp TGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCTGGACACCATCCCGATaGCGGTGCTGTACTGCATGC +
Preference number: 4 (lower is better)
Translates to: WTRTIPGIADTLAQYLRCWTPSR*RCCTAC
Trigger: GCATGCAGTACAGCACCGTCATCGGGATGGTGTCCA...GCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGGTCAGAAGCAGGTGTaGGAGGTGGCGGTGTGCATG +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEGQKQV*EVAVCM
Trigger: CATGCACACCGCCACCTCTCACACCTGCTTCTGACC...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp TGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCGTGGATCAGTCTCTCTaGGTGTCTGAGCCGCTGCCT +
Preference number: 4 (lower is better)
Translates to: WTRTIPGIADTLAQYLRCVDQSL*VSEPLP
Trigger: AGGCAGCGGCTCAGACACTCAGAGAGACTGATCCAC...GCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACTGAGCGACCCCCAGTaGCCGAAGGGAAAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVLSDPQ*PKGKQG
Trigger: GCCTTGCTTTCCCTTCGGGCACTGGGGGTCGCTCAG...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGCTCAGCTCCCCCTTaGCTTTCAGCTGGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLSSAPP*LSAGQL
Trigger: CAGCTGCCCAGCTGAAAGCCAAGGGGGAGCTGAGCT...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp ACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGAGGACATCAAAGCAGTaGTCCCCGGCCAGCGTAGCA +
Preference number: 4 (lower is better)
Translates to: TRTIPGIADTLAQYLRCQRTSKQ*SPASVA
Trigger: TGCTACGCTGGCCGGGGACCACTGCTTTGATGTCCT...CTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGTGGCGGTGTGCATGCTaGTCCCAGTGGACACCATCC +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLWRCAC*SQWTPS
Trigger: GGATGGTGTCCACTGGGACCAGCATGCACACCGCCA...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGAAGAAGGTGGGGGTaGGAGCAAGGCCAGGTGCTC +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLRRRWG*EQGQVL
Trigger: GAGCACCTGGCCTTGCTCCCACCCCCACCTTCTTCT...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp TGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCCGGTAGCTCTCCATTaGGCAGCGACCATATCTGGA +
Preference number: 4 (lower is better)
Translates to: WTRTIPGIADTLAQYLRCPVALH*AATISG
Trigger: TCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGG...GCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGTGGACACCATCCCGATaGCGGTGCTGTACTGCATGC +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLWTPSR*RCCTAC
Trigger: GCATGCAGTACAGCACCGTCATCGGGATGGTGTCCA...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGGTGGATCAGTCTCTCTaGGTGTCTGAGCCGCTGCCT +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLVDQSL*VSEPLP
Trigger: AGGCAGCGGCTCAGACACTCAGAGAGACTGATCCAC...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTGTGCCAGGCAGGCCCTaGAGGGCCATTGGCACATCC +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPVPGRP*RAIGTS
Trigger: GGATGTGCCAATGGCCCTTCAGGGCCTGCCTGGCAC...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCCCAGCGCTCTCCATaGGAGCGTCGCTGTGGCCCC +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQAQRSP*ERRCGP
Trigger: GGGGCCACAGCGACGCTCGCATGGAGAGCGCTGGGC...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR GCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGAGTGCCCAGTCTCCTaGCGGAAAGTGCTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEECPVS*RKVLLK
Trigger: CTTCAGCAGCACTTTCCGGCAGGAGACTGGGCACTC...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGAGGGCTGGGCCCACTTaGCGGGCGCGAAGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQRAGPT*RARSPG
Trigger: ACCTGGGCTTCGCGCCCGCCAAGTGGGCCCAGCCCT...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCAGGCGTCAGCCACATaGGTCAGAAGCAGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVQASAT*VRSRCE
Trigger: CTCACACCTGCTTCTGACCCATGTGGCTGACGCCTG...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGAGGCAAAGAAGAAGGTaGGGGTGGGAGCAAGGCCAG +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPERQRRR*GWEQGQ
Trigger: CTGGCCTTGCTCCCACCCCCACCTTCTTCTTTGCCT...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGGGGCCACATCCTAAGTaGGGTGGCATCGAGAAGTCC +
Preference number: 4 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVGPHPK*GGIEKS
Trigger: GGACTTCTCGATGCCACCCCACTTAGGATGTGGCCC...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCCCCCGGTGGACCACTaGGCCCCAGTGCTGACCATG +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRPPVDH*APVLTM
Trigger: CATGGTCAGCACTGGGGCCCAGTGGTCCACCGGGGG...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCGTGGCATCCCCCGGTaGACCACTGGGCCCCAGTGC +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYRGIPR*TTGPQC
Trigger: GCACTGGGGCCCAGTGGTCCACCGGGGGATGCCACG...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGGTTAGGAACATAGCGTaGCATCCCCCGGTGGACCAC +
Preference number: 4 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVVRNIA*HPPVDH
Trigger: GTGGTCCACCGGGGGATGCCACGCTATGTTCCTAAC...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGGGCAGCTGTGAGCAGTaGGTCTTTCTGGAGCAAGAG +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLGSCEQ*VFLEQE
Trigger: CTCTTGCTCCAGAAAGACTCACTGCTCACAGCTGCC...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGGCAGCTGTGAGCAGTaGGTCTTTCTGGAGCAAGAG +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEGSCEQ*VFLEQE
Trigger: CTCTTGCTCCAGAAAGACTCACTGCTCACAGCTGCC...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTATGGACACCATCCCGATaGCGGTGCTGTACTGCATGC +
Preference number: 4 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVWTPSR*RCCTAC
Trigger: GCATGCAGTACAGCACCGTCATCGGGATGGTGTCCA...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGACAGACAGAAGACCATaGCGCCACCAGCAACGACAG +
Preference number: 4 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVTDRRP*RHQQRQ
Trigger: CTGTCGTTGCTGGTGGCGGCATGGTCTTCTGTCTGT...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGCCGAAGTCTGGGGTCTaGCTATGGCTTCCCTGGAAT +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEPKSGV*LWLPWN
Trigger: ATTCCAGGGAAGCCATAGGCAGACCCCAGACTTCGG...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGGGGAGCAAGGCCAGGTaGTCCCCGAAGTCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRGSKAR*SPKSGV
Trigger: GACCCCAGACTTCGGGGAGCACCTGGCCTTGCTCCC...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGCAGCAACGACAGGCCTaGTCGCCCGCCGGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQQQRQA*SPAGWS
Trigger: ACTCCAGCCGGCGGGCGAGCAGGCCTGTCGTTGCTG...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGTGGACTTCCGAGGCCTaGAAGTGGACCATGTCGCTT +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEWTSEA*KWTMSL
Trigger: AAGCGACATGGTCCACTTCCAGGCCTCGGAAGTCCA...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACAGGCGTCAGCCACATaGGTCAGAAGCAGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVQASAT*VRSRCE
Trigger: CTCACACCTGCTTCTGACCCATGTGGCTGACGCCTG...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCGGCCATGTCCCCGAATaGGCAGGAGGCCGTCTGTCC +
Preference number: 4 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSGHVPE*AGGRLS
Trigger: GGACAGACGGCCTCCTGCCCATTCGGGGACATGGCC...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp TGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCATCCTCAAGGTACTTaGCTTTCAGCTGGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: WTRTIPGIADTLAQYLRCHPQGT*LSAGQL
Trigger: CAGCTGCCCAGCTGAAAGCCAAGTACCTTGAGGATG...GCACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR TCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTGGTCAGAAGCAGGTGTaGGAGGTGGCGGTGTGCATG +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPGQKQV*EVAVCM
Trigger: CATGCACACCGCCACCTCTCACACCTGCTTCTGACC...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGCTTCCCTGGAATGGATaGTTCATCTCTGCCCAGTCC +
Preference number: 4 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLLPWNG*FISAQS
Trigger: GGACTGGGCAGAGATGAATCATCCATTCCAGGGAAG...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGACTGGGCCCCAGTGCTaGCCATGGGGATTAGGGCCA +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRTGPQC*PWGLGP
Trigger: TGGCCCTAATCCCCATGGTCAGCACTGGGGCCCAGT...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAACTCGGCGCCTCGGGCTaGGACGCTCACAGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQLGASG*DAHSFH
Trigger: GTGGAAGCTGTGAGCGTCGCAGCCCGAGGCGCCGAG...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR GCA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGGCAATACTTGGTCCATaGGCACAAACACCCGCTCCA +
Preference number: 4 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVAILGP*AQTPAP
Trigger: TGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGC...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAACCCCCGGTGGACCACTaGGCCCCAGTGCTGACCATG +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQPPVDH*APVLTM
Trigger: CATGGTCAGCACTGGGGCCCAGTGGTCCACCGGGGG...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGGCCATGTCCCCGAATaGGCAGGAGGCCGTCTGTCC +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQGHVPE*AGGRLS
Trigger: GGACAGACGGCCTCCTGCCCATTCGGGGACATGGCC...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACGGCCATGTCCCCGAATaGGCAGGAGGCCGTCTGTCC +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYGHVPE*AGGRLS
Trigger: GGACAGACGGCCTCCTGCCCATTCGGGGACATGGCC...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCGGTCAGAAGCAGGTGTaGGAGGTGGCGGTGTGCATG +
Preference number: 4 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSGQKQV*EVAVCM
Trigger: CATGCACACCGCCACCTCTCACACCTGCTTCTGACC...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAGTCTCTCTGAGTGTCTaGGCCGCTGCCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQVSLSV*AAACRA
Trigger: GGCCCTGCAGGCAGCGGCTCAGACACTCAGAGAGAC...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTGTGGATCAGTCTCTCTaGGTGTCTGAGCCGCTGCCT +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPVDQSL*VSEPLP
Trigger: AGGCAGCGGCTCAGACACTCAGAGAGACTGATCCAC...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGAGGTGGCGGTGTGCATaGTGGTCCCAGTGGACACCA +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRRWRCA*WSQWTP
Trigger: TGGTGTCCACTGGGACCAGCATGCACACCGCCACCT...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCTCCGAGGCCTGGAAGTaGACCATGTCGCTTCGCAGC +
Preference number: 4 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSSEAWK*TMSLRS
Trigger: GCTGCGAAGCGACATGGTCCACTTCCAGGCCTCGGA...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGAAGCGCACAAGGTGGTaGCCAGAGCCCGAGCAGAAC +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRKRTRW*PEPEQN
Trigger: GTTCTGCTCGGGCTCTGGCCACCACCTTGTGCGCTT...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGAGTCTGGCAATACTTaGTCCATGCGCACAAACACC +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEESGNT*SMRTNT
Trigger: GGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTC...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTCAGGCGTCAGCCACATaGGTCAGAAGCAGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPQASAT*VRSRCE
Trigger: CTCACACCTGCTTCTGACCCATGTGGCTGACGCCTG...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGGTGCTCCCCGAAGTCTaGGGTCTGCCTATGGCTTCC +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRVLPEV*GLPMAS
Trigger: GGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCAC...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTGTTAGGAACATAGCGTaGCATCCCCCGGTGGACCAC +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPVRNIA*HPPVDH
Trigger: GTGGTCCACCGGGGGATGCCACGCTATGTTCCTAAC...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCCTGAGGCAAGCACAGTaGTCACCCCGAAGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSLRQAQ*SPRSPG
Trigger: ACCTGGGCTTCGGGGTGACCACTGTGCTTGCCTCAG...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR TCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAGCCGGAAAGTGCTGCTaGAGTCAGACCACAGGGGCG +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQAGKCC*SQTTGA
Trigger: CGCCCCTGTGGTCTGACTTCAGCAGCACTTTCCGGC...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR GCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTTTGTTGTGTAGCAGCTaGTGGACTTCCGAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPLLCSS*WTSEAW
Trigger: CCAGGCCTCGGAAGTCCAGCAGCTGCTACACAACAA...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTAATGACGGTGCTGTACTaGATGCCGGAAGTGAAAGTG +
Preference number: 4 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVMTVLY*MPEVKV
Trigger: CACTTTCACTTCCGGCATGCAGTACAGCACCGTCAT...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGAGGTGGCGGTGTGCATaGTGGTCCCAGTGGACACCA +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQRWRCA*WSQWTP
Trigger: TGGTGTCCACTGGGACCAGCATGCACACCGCCACCT...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAGCGGGTGACAGCGAGTaGCCAGTCTCCTGCCGGAAA +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQAGDSE*PVSCRK
Trigger: TTTCCGGCAGGAGACTGGGCACTCGCTGTCACCCGC...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTTGGACTTCCGAGGCCTaGAAGTGGACCATGTCGCTT +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPWTSEA*KWTMSL
Trigger: AAGCGACATGGTCCACTTCCAGGCCTCGGAAGTCCA...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTCAGCAGGCAGGAGTCTaGCAATACTTGGTCCATGCG +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPQQAGV*QYLVHA
Trigger: CGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTG...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAGAGCCTGCCAGGGGCTaGAGCTCTGGCAGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQEPARG*SSGRRK
Trigger: TTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTC...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGAGAAGAAGGTGGGGGTaGGAGCAAGGCCAGGTGCTC +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQRRRWG*EQGQVL
Trigger: GAGCACCTGGCCTTGCTCCCACCCCCACCTTCTTCT...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACATTAGGGCCAGGGATTaGAGGTGGCAGAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYIRARD*RWQRAR
Trigger: CCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAAT...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGATTAGGGCCAGGGATTaGAGGTGGCAGAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQIRARD*RWQRAR
Trigger: CCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAAT...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGTCAGCTGGGCAGCTGTaGGCAGTGAGTCTTTCTGGA +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRSAGQL*AVSLSG
Trigger: TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGA...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCCCGGTAGCTCTCCATTaGGCAGCGACCATATCTGGA +
Preference number: 4 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSPVALH*AATISG
Trigger: TCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGG...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGCCACTGGATTATAGTTaGAGAATTCATGGGGTGGGA +
Preference number: 4 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPEPLDYS*RIHGVG
Trigger: TCCCACCCCATGAATTCTTCAACTATAATCCAGTGG...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGACAGACAGAAGACCATaGCGCCACCAGCAACGACAG +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRTDRRP*RHQQRQ
Trigger: CTGTCGTTGCTGGTGGCGGCATGGTCTTCTGTCTGT...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAAGGTGGCGGTGTGCATaGTGGTCCCAGTGGACACCA +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQRWRCA*WSQWTP
Trigger: TGGTGTCCACTGGGACCAGCATGCACACCGCCACCT...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp CTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGTTGTGTAGCAGCTGCTaGACTTCCGAGGCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: LCSSMPLLVTAMDKNNTRLCSSC*TSEAWK
Trigger: CTTCCAGGCCTCGGAAGTCCAGCAGCTGCTACACAA...CCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACGAGCCCGAGCAGAACTaGCGGACCTCACGATACTGT +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYEPEQN*RTSRYC
Trigger: ACAGTATCGTGAGGTCCGCCAGTTCTGCTCGGGCTC...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR TCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCACTGGATTATAGTTaGAGAATTCATGGGGTGGGA +
Preference number: 4 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVPLDYS*RIHGVG
Trigger: TCCCACCCCATGAATTCTTCAACTATAATCCAGTGG...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCCGAAGTCTGGGGTCTaGCTATGGCTTCCCTGGAAT +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYPKSGV*LWLPWN
Trigger: ATTCCAGGGAAGCCATAGGCAGACCCCAGACTTCGG...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAAGGACATCAAAGCAGTaGTCCCCGGCCAGCGTAGCA +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQRTSKQ*SPASVA
Trigger: TGCTACGCTGGCCGGGGACCACTGCTTTGATGTCCT...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAAGGCAAAGAAGAAGGTaGGGGTGGGAGCAAGGCCAG +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQRQRRR*GWEQGQ
Trigger: CTGGCCTTGCTCCCACCCCCACCTTCTTCTTTGCCT...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACGAAGAATTCATGGGGTaGGAAGGGCTGGCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYEEFMG*EGLAWE
Trigger: TTCCCAGGCCAGCCCTTCCCACCCCATGAATTCTTC...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGAAGAATTCATGGGGTaGGAAGGGCTGGCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQEEFMG*EGLAWE
Trigger: TTCCCAGGCCAGCCCTTCCCACCCCATGAATTCTTC...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAGGGCCACATCCTAAGTaGGGTGGCATCGAGAAGTCC +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQGPHPK*GGIEKS
Trigger: GGACTTCTCGATGCCACCCCACTTAGGATGTGGCCC...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAGTTAGGAACATAGCGTaGCATCCCCCGGTGGACCAC +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQVRNIA*HPPVDH
Trigger: GTGGTCCACCGGGGGATGCCACGCTATGTTCCTAAC...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGTCCAGTTTGTATGTGTaGATCAGTCTCTCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVSSLYV*ISLSEC
Trigger: ACACTCAGAGAGACTGATCCACACATACAAACTGGA...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATCAGCTGGGCAGCTGTaGGCAGTGAGTCTTTCTGGA +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQSAGQL*AVSLSG
Trigger: TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGA...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACACTGCATGCCGGAAGTaGAAGTGGAGGTCTAGGACA +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYTACRK*KWRSRT
Trigger: TGTCCTAGACCTCCACTTTCACTTCCGGCATGCAGT...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR GCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACGCAATACTTGGTCCATaGGCACAAACACCCGCTCCA +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYAILGP*AQTPAP
Trigger: TGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGC...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATTGTGTAGCAGCTGCTaGACTTCCGAGGCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQLCSSC*TSEAWK
Trigger: CTTCCAGGCCTCGGAAGTCCAGCAGCTGCTACACAA...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCGAGAAGTCCTCCACTaGATTATAGTTGAAGAATTC +
Preference number: 4 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVREVLH*IIVEEF
Trigger: GAATTCTTCAACTATAATCCAGTGGAGGACTTCTCG...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAACTTCCCTGGAATGGATaGTTCATCTCTGCCCAGTCC +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQLPWNG*FISAQS
Trigger: GGACTGGGCAGAGATGAATCATCCATTCCAGGGAAG...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGAGTCTGGCAATACTTaGTCCATGCGCACAAACACC +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQESGNT*SMRTNT
Trigger: GGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTC...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCATGGCTTCCCTGGAATaGATGATTCATCTCTGCCCA +
Preference number: 4 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSMASLE*MIHLCP
Trigger: TGGGCAGAGATGAATCATCCATTCCAGGGAAGCCAT...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACGAGAAGTCCTCCACTaGATTATAGTTGAAGAATTC +
Preference number: 4 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVREVLH*IIVEEF
Trigger: GAATTCTTCAACTATAATCCAGTGGAGGACTTCTCG...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR TCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAACGGAGTAAACACGAGTaGGGAAGTAGAAGCGCACAA +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQRSKHE*GSRSAQ
Trigger: TTGTGCGCTTCTACTTCCTCACTCGTGTTTACTCCG...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR TCA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCCCATGCCTTTATTGGTaGCAGCAATGGACAAGAACA +
Preference number: 4 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSPCLYW*QQWTRT
Trigger: TGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGG...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR GCA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAATGACGGTGCTGTACTaGATGCCGGAAGTGAAAGTG +
Preference number: 4 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQMTVLY*MPEVKV
Trigger: CACTTTCACTTCCGGCATGCAGTACAGCACCGTCAT...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACATGGCTTCCCTGGAATaGATGATTCATCTCTGCCCA +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYMASLE*MIHLCP
Trigger: TGGGCAGAGATGAATCATCCATTCCAGGGAAGCCAT...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CCA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTTCCAGTTTGTATGTGTaGATCAGTCTCTCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPSSLYV*ISLSEC
Trigger: ACACTCAGAGAGACTGATCCACACATACAAACTGGA...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR TCA 90 bp GTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCCATGCCTTTATTGGTaGCAGCAATGGACAAGAACA +
Preference number: 4 (lower is better)
Translates to: VTLFFHAFIGDSNGQEQYPCLYW*QQWTRT
Trigger: TGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGG...GTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CCA 90 bp ACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGTCCAGTTTGTATGTGTaGATCAGTCTCTCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: TLFFHAFIGDSNGQEQYQSSLYV*ISLSEC
Trigger: ACACTCAGAGAGACTGATCCACACATACAAACTGGA...CTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS GCA 90 bp CAGGCAAGTCCCGGGGCTCCGCGGTGTTCACCCGCGACCCGGGTATaGCTGCGCACCGCGCGCCTGGCCCGCAGCGGGCTCCTAGCCAAG +
Preference number: 5 (lower is better)
Translates to: QASPGAPRCSPATRV*LRTARLARSGLLAK
Trigger: CTTGGCTAGGAGCCCGCTGCGGGCCAGGCGCGCGGTGCGCAGGCATACCCGGGTCGCGGGTGAACACCGCGGAGCCCCGGGACTTGCCTG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS GCA 90 bp TCCAGGTTAGCCGTCGGTGCACAGCCCAGCGCCCAGCGCTCTCCATaGGAGCGTCGCTGTGGCCCCGACGGCGCCTCAGGCCTCGGCGCC +
Preference number: 5 (lower is better)
Translates to: SRLAVGAQPSAQRSP*ERRCGPDGASGLGA
Trigger: GGCGCCGAGGCCTGAGGCGCCGTCGGGGCCACAGCGACGCTCGCATGGAGAGCGCTGGGCGCTGGGCTGTGCACCGACGGCTAACCTGGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS GCA 90 bp TTCGCAGCGGGCGGCGCGGCTCCTCGCTCGACAGACAGAAGACCATaGCGCCACCAGCAACGACAGGCCTGCTCGCCCGCCGGCTGGAGT +
Preference number: 5 (lower is better)
Translates to: FAAGGAAPRSTDRRP*RHQQRQACSPAGWS
Trigger: ACTCCAGCCGGCGGGCGAGCAGGCCTGTCGTTGCTGGTGGCGGCATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCCCGCTGCGAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000439542.1
CDS GCA 90 bp TTCGCAGCGGGCGGCGCGGCTCCTCGCTCGACAGACAGAAGACCATaGCGCCACCAGCAACGACAGGCAAGTCCCGGGGCTCCGCGGTGT +
Preference number: 5 (lower is better)
Translates to: FAAGGAAPRSTDRRP*RHQQRQASPGAPRC
Trigger: ACACCGCGGAGCCCCGGGACTTGCCTGTCGTTGCTGGTGGCGGCATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCCCGCTGCGAA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS CCA 90 bp CAGTCGGCCAGTCGGTTCTGCAAAGCTCCCGCCCCGCAGAGACCGTaGGTCCAGGTTAGCCGTCGGTGCACAGCCCAGCGCCCAGCGCTC +
Preference number: 5 (lower is better)
Translates to: QSASRFCKAPAPQRP*VQVSRRCTAQRPAL
Trigger: GAGCGCTGGGCGCTGGGCTGTGCACCGACGGCTAACCTGGACCCACGGTCTCTGCGGGGCGGGAGCTTTGCAGAACCGACTGGCCGACTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS GCA 90 bp CTAGCCAAGCCTCATGTTCCCGCGCCCCAGTCGGCCAGTCGGTTCTaGAAAGCTCCCGCCCCGCAGAGACCGTGGGTCCAGGTTAGCCGT +
Preference number: 5 (lower is better)
Translates to: LAKPHVPAPQSASRF*KAPAPQRPWVQVSR
Trigger: ACGGCTAACCTGGACCCACGGTCTCTGCGGGGCGGGAGCTTTGCAGAACCGACTGGCCGACTGGGGCGCGGGAACATGAGGCTTGGCTAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS-3UTR CAA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCAGGCCCTGAAGGGCCATaGGCACATCCAGTCCCAGCC +
Preference number: 5 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPGPEGP*AHPVPA
Trigger: GGCTGGGACTGGATGTGCCAATGGCCCTTCAGGGCC...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS TCA 90 bp CGAAGCCCAGGTCTGTTAGCCTCCGGAAAGATGCTCAGATCTCGCTaGGGGAGGCAGCTCGCGGGTGACAGCGAGTGCCCAGTCTCCTGC +
Preference number: 5 (lower is better)
Translates to: RSPGLLASGKMLRSR*GRQLAGDSECPVSC
Trigger: GCAGGAGACTGGGCACTCGCTGTCACCCGCGAGCTGCCTCCCTCAGCGAGATCTGAGCATCTTTCCGGAGGCTAACAGACCTGGGCTTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000439542.1
CDS-3UTR CAA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGCAGGGCTGGGCCCACTaGGCGGGCGCGAAGCCCAGG +
Preference number: 5 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLQGWAH*AGAKPR
Trigger: CCTGGGCTTCGCGCCCGCCAAGTGGGCCCAGCCCTG...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS CCA 90 bp CATGTCCCCGAATGGGCAGGAGGCCGTCTGTCCAGTTTGTATGTGTaGATCAGTCTCTCTGAGTGTCTGAGCCGCTGCCTGCAGGGCCCC +
Preference number: 5 (lower is better)
Translates to: HVPEWAGGRLSSLYV*ISLSECLSRCLQGP
Trigger: GGGGCCCTGCAGGCAGCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
ENST00000487501.2
CDS TCA 90 bp CATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTaGAGGGCCATTGGCACATCCAGTCCCAGCCCAAGATCCAGTCTA +
Preference number: 5 (lower is better)
Translates to: HSRHPSPVPEVPGRP*RAIGTSSPSPRSSL
Trigger: TAGACTGGATCTTGGGCTGGGACTGGATGTGCCAATGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
ENST00000487501.2
CDS CCA 90 bp CAGGTGCTCCCCGAAGTCTGGGGTCTGCCTATGGCTTCCCTGGAATaGATGATTCATCTCTGCCCAGTCCTCAATCCACGGGTCAGGGGG +
Preference number: 5 (lower is better)
Translates to: QVLPEVWGLPMASLE*MIHLCPVLNPRVRG
Trigger: CCCCCTGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCATTCCAGGGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCACCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS GCA 90 bp GTCTGGGGTCTGCCTATGGCTTCCCTGGAATGGATGATTCATCTCTaGCCAGTCCTCAATCCACGGGTCAGGGGGATAGCCACGCTTGGG +
Preference number: 5 (lower is better)
Translates to: VWGLPMASLEWMIHL*PVLNPRVRGIATLG
Trigger: CCCAAGCGTGGCTATCCCCCTGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCATTCCAGGGAAGCCATAGGCAGACCCCAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS CCA 90 bp CCAGTCCCAGCCCAAGATCCAGTCTACCCAGGCCATGTCCCCGAATaGGCAGGAGGCCGTCTGTCCAGTTTGTATGTGTGGATCAGTCTC +
Preference number: 5 (lower is better)
Translates to: PVPAQDPVYPGHVPE*AGGRLSSLYVWISL
Trigger: GAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTGGGTAGACTGGATCTTGGGCTGGGACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
ENST00000487501.2
CDS-3UTR CAA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCAACATCCTCAAGGTACTaGGCTTTCAGCTGGGCAGCT +
Preference number: 5 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPTSSRY*AFSWAA
Trigger: AGCTGCCCAGCTGAAAGCCAAGTACCTTGAGGATGT...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CAA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGGGCCCTGAAGGGCCATaGGCACATCCAGTCCCAGCC +
Preference number: 5 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVGPEGP*AHPVPA
Trigger: GGCTGGGACTGGATGTGCCAATGGCCCTTCAGGGCC...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CAA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTAGGCCCTGAAGGGCCATaGGCACATCCAGTCCCAGCC +
Preference number: 5 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVGPEGP*AHPVPA
Trigger: GGCTGGGACTGGATGTGCCAATGGCCCTTCAGGGCC...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CAA 90 bp CCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCGCACAGCCGCCTTaGGGCAGGGAGCCGGGCCTT +
Preference number: 5 (lower is better)
Translates to: PLLVTAMDKNNTRHSRHPSAQPP*GREPGL
Trigger: AAGGCCCGGCTCCCTGCCCAAAGGCGGCTGTGCGCT...AGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356872.7
CDS-3UTR CAA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACGATACTGTGTCCCGTaGTGCAGCTCGCCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVRYCVP*CSSPSW
Trigger: CCAGCTGGGCGAGCTGCACAACGGGACACAGTATCG...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360652.7
CDS-3UTR CAA 90 bp ATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCAGGCAGGCCCTGAAGGGCCATCTTCCATGCCTTTATaGGTGACAGCAATGGACAAG +
Preference number: 5 (lower is better)
Translates to: IADTLAQYLRCQAGPEGPSSMPL*VTAMDK
Trigger: CTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA...TGGCCCTTCAGGGCCTGCCTGGCACCTCAGGTACTGGGCTAGGGTGTCTGCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CAA 90 bp ATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGGTGCCCGGTAGCTCTCCATaGAGCAGCGACCATATCTGG +
Preference number: 5 (lower is better)
Translates to: MDKNNTRHSRHPSPVPEVPGSSP*SSDHIW
Trigger: CCAGATATGGTCGCTGCTCAATGGAGAGCTACCGGG...CACCTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CAA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCCGGTAGCTCTCCATaGAGCAGCGACCATATCTGG +
Preference number: 5 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVPGSSP*SSDHIW
Trigger: CCAGATATGGTCGCTGCTCAATGGAGAGCTACCGGG...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CAA 90 bp GTGACAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTAGGCCGTCTGTCCAGTTaGTATGTGTGGATCAGTCTC +
Preference number: 5 (lower is better)
Translates to: VTAMDKNNTRHSRHPSPVGRLSS*YVWISL
Trigger: GAGACTGATCCACACATACAAACTGGACAGACGGCC...TACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CAA 90 bp GCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGAGTCTTCCATGCCTTTATaGGTGACAGCAATGGACAAG +
Preference number: 5 (lower is better)
Translates to: AMDKNNTRHSRHPSPVPESSMPL*VTAMDK
Trigger: CTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA...CTCAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CAA 90 bp CAGCAATGGACAAGAACAATACCAGGCATAGCAGACACCCTAGCCCAGTACCTGTCTTCCATGCCTTTATaGGTGACAGCAATGGACAAG +
Preference number: 5 (lower is better)
Translates to: QQWTRTIPGIADTLAQYLSSMPL*VTAMDK
Trigger: CTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA...CAGGTACTGGGCTAGGGTGTCTGCTATGCCTGGTATTGTTCTTGTCCATTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS-3UTR CAA 90 bp TCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAATACCAGGCATAGCGGAGTCTGGCAATACTaGGTCCATGCGCACAAACAC +
Preference number: 5 (lower is better)
Translates to: SSMPLLVTAMDKNNTRHSGVWQY*VHAHKH
Trigger: GTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCC...GCTATGCCTGGTATTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS-3UTR CAA 90 bp TTTGTCACTCTGTTCTTCCATGCCTTTATTGGTGACAGCAATGGACAAGAACAAGGCCGTCTGTCCAGTTaGTATGTGTGGATCAGTCTC +
Preference number: 5 (lower is better)
Translates to: FVTLFFHAFIGDSNGQEQGRLSS*YVWISL
Trigger: GAGACTGATCCACACATACAAACTGGACAGACGGCC...TTGTTCTTGTCCATTGCTGTCACCAATAAAGGCATGGAAGAACAGAGTGACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
CDS GCA 72 bp GCCGTCGGTGCACAGCCCAGCGCCCAGCGCTCTCCATaGGAGCGTCGCTGTGGCCCCGACGGCGCCTCAGGC +
Preference number: 6 (lower is better)
Translates to: AVGAQPSAQRSP*ERRCGPDGASG
Trigger: GCCTGAGGCGCCGTCGGGGCCACAGCGACGCTCGCATGGAGAGCGCTGGGCGCTGGGCTGTGCACCGACGGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS GCA 72 bp GGCGGCGCGGCTCCTCGCTCGACAGACAGAAGACCATaGCGCCACCAGCAACGACAGGCCTGCTCGCCCGCC +
Preference number: 6 (lower is better)
Translates to: GGAAPRSTDRRP*RHQQRQACSPA
Trigger: GGCGGGCGAGCAGGCCTGTCGTTGCTGGTGGCGGCATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000439542.1
CDS CCA 72 bp CGCCACCAGCAACGACAGGCCTGCTCGCCCGCCGGCTaGAGTCTCCCGGCGGCGTTCGCCCCTGTCACTACT +
Preference number: 6 (lower is better)
Translates to: RHQQRQACSPAG*SLPAAFAPVTT
Trigger: AGTAGTGACAGGGGCGAACGCCGCCGGGAGACTCCAGCCGGCGGGCGAGCAGGCCTGTCGTTGCTGGTGGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000439542.1
CDS GCA 72 bp CCTCATGTTCCCGCGCCCCAGTCGGCCAGTCGGTTCTaGAAAGCTCCCGCCCCGCAGAGACCGTGGGTCCAG +
Preference number: 6 (lower is better)
Translates to: PHVPAPQSASRF*KAPAPQRPWVQ
Trigger: CTGGACCCACGGTCTCTGCGGGGCGGGAGCTTTGCAGAACCGACTGGCCGACTGGGGCGCGGGAACATGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS GCA 72 bp GGCGGCGCGGCTCCTCGCTCGACAGACAGAAGACCATaGCGCCACCAGCAACGACAGGCAAGTCCCGGGGCT +
Preference number: 6 (lower is better)
Translates to: GGAAPRSTDRRP*RHQQRQASPGA
Trigger: AGCCCCGGGACTTGCCTGTCGTTGCTGGTGGCGGCATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS CCA 72 bp AGTCGGTTCTGCAAAGCTCCCGCCCCGCAGAGACCGTaGGTCCAGGTTAGCCGTCGGTGCACAGCCCAGCGC +
Preference number: 6 (lower is better)
Translates to: SRFCKAPAPQRP*VQVSRRCTAQR
Trigger: GCGCTGGGCTGTGCACCGACGGCTAACCTGGACCCACGGTCTCTGCGGGGCGGGAGCTTTGCAGAACCGACT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS GCA 72 bp AGGCAGCTCGCGGGTGACAGCGAGTGCCCAGTCTCCTaGCGGAAAGTGCTGCTGAAGTCAGACCACAGGGGC +
Preference number: 6 (lower is better)
Translates to: RQLAGDSECPVS*RKVLLKSDHRG
Trigger: GCCCCTGTGGTCTGACTTCAGCAGCACTTTCCGGCAGGAGACTGGGCACTCGCTGTCACCCGCGAGCTGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000439542.1
CDS TCA 72 bp TCACAGCTTCCACTTCCGTTCACCCATGTCCCGCCCTaGGCGACCCCCAGTGCCCGAAGGGAAAGCAAGGCG +
Preference number: 6 (lower is better)
Translates to: SQLPLPFTHVPP*ATPSARRESKA
Trigger: CGCCTTGCTTTCCCTTCGGGCACTGGGGGTCGCTCAGGGCGGGACATGGGTGAACGGAAGTGGAAGCTGTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000360652.7
ENST00000448755.5
CDS TCA 72 bp GGTCTGTTAGCCTCCGGAAAGATGCTCAGATCTCGCTaGGGGAGGCAGCTCGCGGGTGACAGCGAGTGCCCA +
Preference number: 6 (lower is better)
Translates to: GLLASGKMLRSR*GRQLAGDSECP
Trigger: TGGGCACTCGCTGTCACCCGCGAGCTGCCTCCCTCAGCGAGATCTGAGCATCTTTCCGGAGGCTAACAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000439542.1
CDS CCA 72 bp GCCCAAGATCCAGTCTACCCAGGCCATGTCCCCGAATaGGCAGGAGGCCGTCTGTCCAGTTTGTATGTGTGG +
Preference number: 6 (lower is better)
Translates to: AQDPVYPGHVPE*AGGRLSSLYVW
Trigger: CCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTGGGTAGACTGGATCTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
ENST00000487501.2
CDS CAA 90 bp TACCCAGGCCATGTCCCCGAATGGGCAGGAGGCCGTCTGTCCAGTTaGTATGTGTGGATCAGTCTCTCTGAGTGTCTGAGCCGCTGCCTG +
Preference number: 6 (lower is better)
Translates to: YPGHVPEWAGGRLSS*YVWISLSECLSRCL
Trigger: CAGGCAGCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTGGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
ENST00000487501.2
CDS GCA 72 bp CTGCCTATGGCTTCCCTGGAATGGATGATTCATCTCTaGCCAGTCCTCAATCCACGGGTCAGGGGGATAGCC +
Preference number: 6 (lower is better)
Translates to: LPMASLEWMIHL*PVLNPRVRGIA
Trigger: GGCTATCCCCCTGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCATTCCAGGGAAGCCATAGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS CCA 72 bp CCCGAAGTCTGGGGTCTGCCTATGGCTTCCCTGGAATaGATGATTCATCTCTGCCCAGTCCTCAATCCACGG +
Preference number: 6 (lower is better)
Translates to: PEVWGLPMASLE*MIHLCPVLNPR
Trigger: CCGTGGATTGAGGACTGGGCAGAGATGAATCATCCATTCCAGGGAAGCCATAGGCAGACCCCAGACTTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7
CDS CCA 72 bp GAATGGGCAGGAGGCCGTCTGTCCAGTTTGTATGTGTaGATCAGTCTCTCTGAGTGTCTGAGCCGCTGCCTG +
Preference number: 6 (lower is better)
Translates to: EWAGGRLSSLYV*ISLSECLSRCL
Trigger: CAGGCAGCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000356872.7
ENST00000360652.7
ENST00000474714.5
ENST00000487501.2
CDS TCA 72 bp AAGTCTGGGGTCTGCCTATGGCTTCCCTGGAATGGATaGTTCATCTCTGCCCAGTCCTCAATCCACGGGTCA +
Preference number: 6 (lower is better)
Translates to: KSGVCLWLPWNG*FISAQSSIHGS
Trigger: TGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCATTCCAGGGAAGCCATAGGCAGACCCCAGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000356872.7
ENST00000360652.7