Pregenerated sensors for PCDHGB3 (Homo sapiens)
Ensembl gene IDs: ENSG00000262209Ensembl transcript IDs: ENST00000576222.2, ENST00000618934.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GGTCCTAAACCTGCTTCGAGCTTCCTTGGACTGAAATaGCAGTTTAATCCATTGGTCCTGTTAGCTCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: GPKPASSFLGLK*QFNPLVLLAQP Trigger: GGGCTGAGCTAACAGGACCAATGGATTAAACTGGCATTTCAGTCCAAGGAAGCTCGAAGCAGGTTTAGGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000576222.2 |
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| CDS GCA 90 bp | TCCCAAGAGTTCTCCGAGCAGGACCAACTATTTGCTTTGTCTTTGTaGTTGGGTTCTCTAATGGGTGTCTCCGCTGCAGGAAGCCTGATA | + |
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Preference number: 5 (lower is better) Translates to: SQEFSEQDQLFALSL*LGSLMGVSAAGSLI Trigger: TATCAGGCTTCCTGCAGCGGAGACACCCATTAGAGAACCCAAGCACAAAGACAAAGCAAATAGTTGGTCCTGCTCGGAGAACTCTTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000576222.2 |
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| CDS CCA 90 bp | GCTCCAGTGAGAGCCAGTTCGCTGATTTCCAGCTCAGTGATATTTTaGCTAAAGGTCGGTGGGTTGTCGTTAATATCCTGGATCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: APVRASSLISSSVIF*LKVGGLSLISWIST Trigger: TGTGCTGATCCAGGATATTAACGACAACCCACCGACCTTTAGCCAAAATATCACTGAGCTGGAAATCAGCGAACTGGCTCTCACTGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS GCA 90 bp | ATCTATCTGTACTTTACAATATGCAGTGTGATGTCCACCATCCTTTaGTTCCACCCCAATTGTGTAGCTATCTCTCTCTTCAAAGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: IYLYFTICSVMSTIL*FHPNCVAISLFKVQ Trigger: CTGGACTTTGAAGAGAGAGATAGCTACACAATTGGGGTGGAAGCAAAGGATGGTGGACATCACACTGCATATTGTAAAGTACAGATAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS TCA 90 bp | TTATGGAAGGAAAGGTTTGAAGAAACTCACCTTTTGCAAATTGCCTaGATTAGAAGGCATTTCTGGATTGTCATTACTTTCAAACCAAGA | + |
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Preference number: 5 (lower is better) Translates to: LWKERFEETHLLQIA*IRRHFWIVITFKPR Trigger: TCTTGGTTTGAAAGTAATGACAATCCAGAAATGCCTTCTAATTCAGGCAATTTGCAAAAGGTGAGTTTCTTCAAACCTTTCCTTCCATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618934.1 |
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| CDS GCA 72 bp | GCCCCTCCATCCGGAGCTATTTCCCATCCCGCTCTCTaGGCCTTTGCCTTTCTAAATCCGAGGAGAGGAGAT | + |
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Preference number: 6 (lower is better) Translates to: APPSGAISHPAL*AFAFLNPRRGD Trigger: ATCTCCTCTCCTCGGATTTAGAAAGGCAAAGGCGCAGAGAGCGGGATGGGAAATAGCTCCGGATGGAGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000576222.2 |
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| CDS CCA 72 bp | GGGTTATCATTTGCATCTGCGACAATTACCCTGATCTaGGTGGTACAGCTTCTGGAGGGCTCGCCCCCATCC | + |
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Preference number: 6 (lower is better) Translates to: GLSFASATITLI*VVQLLEGSPPS Trigger: GGATGGGGGCGAGCCCTCCAGAAGCTGTACCACCCAGATCAGGGTAATTGTCGCAGATGCAAATGATAACCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CCA 72 bp | ACGGCAGTCCCCAGCTCAGCATCTTCTTGTATATGTTaGGATTCAGAAGCCAGGGTTATCTCCGGGGCATTG | + |
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Preference number: 6 (lower is better) Translates to: TAVPSSASSCIC*DSEARVISGAL Trigger: CAATGCCCCGGAGATAACCCTGGCTTCTGAATCCCAACATATACAAGAAGATGCTGAGCTGGGGACTGCCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CAA 90 bp | CAAGAGTTCTCCGAGCAGGACCAACTATTTGCTTTGTCTTTGTGCTaGGGTTCTCTAATGGGTGTCTCCGCTGCAGGAAGCCTGATAGAG | + |
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Preference number: 6 (lower is better) Translates to: QEFSEQDQLFALSLC*GSLMGVSAAGSLIE Trigger: CTCTATCAGGCTTCCTGCAGCGGAGACACCCATTAGAGAACCCAAGCACAAAGACAAAGCAAATAGTTGGTCCTGCTCGGAGAACTCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000576222.2 |
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| CDS GCA 72 bp | TTCTCCGAGCAGGACCAACTATTTGCTTTGTCTTTGTaGTTGGGTTCTCTAATGGGTGTCTCCGCTGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: FSEQDQLFALSL*LGSLMGVSAAG Trigger: TCCTGCAGCGGAGACACCCATTAGAGAACCCAAGCACAAAGACAAAGCAAATAGTTGGTCCTGCTCGGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000576222.2 |
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| CDS CAA 72 bp | GAGTTCTCCGAGCAGGACCAACTATTTGCTTTGTCTTaGTGCTTGGGTTCTCTAATGGGTGTCTCCGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: EFSEQDQLFALS*CLGSLMGVSAA Trigger: TGCAGCGGAGACACCCATTAGAGAACCCAAGCACAAAGACAAAGCAAATAGTTGGTCCTGCTCGGAGAACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000576222.2 |
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| CDS CCA 72 bp | AGAGCCAGTTCGCTGATTTCCAGCTCAGTGATATTTTaGCTAAAGGTCGGTGGGTTGTCGTTAATATCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RASSLISSSVIF*LKVGGLSLISW Trigger: CCAGGATATTAACGACAACCCACCGACCTTTAGCCAAAATATCACTGAGCTGGAAATCAGCGAACTGGCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CAA 72 bp | CAGTGTGATGTCCACCATCCTTTGCTTCCACCCCAATaGTGTAGCTATCTCTCTCTTCAAAGTCCAGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: QCDVHHPLLPPQ*CSYLSLQSPVL Trigger: GAGAACTGGACTTTGAAGAGAGAGATAGCTACACAATTGGGGTGGAAGCAAAGGATGGTGGACATCACACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS TCA 72 bp | GTCCGTGTTGGGCGGGGCTTGCTTTTGCAAATTGCCTaGATTAGAAGGCATTTCTGGATTGTCATTACTTTC | + |
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Preference number: 6 (lower is better) Translates to: VRVGRGLLLQIA*IRRHFWIVITF Trigger: GAAAGTAATGACAATCCAGAAATGCCTTCTAATTCAGGCAATTTGCAAAAGCAAGCCCCGCCCAACACGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000576222.2 |
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| CDS CAA 72 bp | GGTGAGTTCCCCCGTTTTACTGTCCAGCTTGAACAGTaGTCTCACTTCCTTGCCAATATTGATGAAGGCATA | + |
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Preference number: 6 (lower is better) Translates to: GEFPRFTVQLEQ*SHFLANIDEGI Trigger: TATGCCTTCATCAATATTGGCAAGGAAGTGAGACAACTGTTCAAGCTGGACAGTAAAACGGGGGAACTCACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CAA 72 bp | CCAATAGTGGTGAGTTCCCCCGTTTTACTGTCCAGCTaGAACAGTTGTCTCACTTCCTTGCCAATATTGATG | + |
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Preference number: 6 (lower is better) Translates to: PIVVSSPVLLSS*NSCLTSLPILM Trigger: CATCAATATTGGCAAGGAAGTGAGACAACTGTTCAAGCTGGACAGTAAAACGGGGGAACTCACCACTATTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CCA 72 bp | GATTTCCAGCTCAGTGATATTTTGGCTAAAGGTCGGTaGGTTGTCGTTAATATCCTGGATCAGCACAGTTAC | + |
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Preference number: 6 (lower is better) Translates to: DFQLSDILAKGR*VVVNILDQHSY Trigger: GTAACTGTGCTGATCCAGGATATTAACGACAACCCACCGACCTTTAGCCAAAATATCACTGAGCTGGAAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CAA 90 bp | TCCAATAGTGGTGAGTTCCCCCGTTTTACTGTCCAGCTTGAACAGTaGTCTCACTTCCTTGCCAATATTGATGAAGGCATAGATGATTTC | + |
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Preference number: 6 (lower is better) Translates to: SNSGEFPRFTVQLEQ*SHFLANIDEGIDDF Trigger: GAAATCATCTATGCCTTCATCAATATTGGCAAGGAAGTGAGACAACTGTTCAAGCTGGACAGTAAAACGGGGGAACTCACCACTATTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CAA 90 bp | TGGCATAGGATTTCTCCATTAAATCCAGAATCTAGATCATGTGTTTaGATCAGGGCAACGGCAGTCCCCAGCTCAGCATCTTCTTGTATA | + |
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Preference number: 6 (lower is better) Translates to: WHRISPLNPESRSCV*IRATAVPSSASSCI Trigger: TATACAAGAAGATGCTGAGCTGGGGACTGCCGTTGCCCTGATCAAAACACATGATCTAGATTCTGGATTTAATGGAGAAATCCTATGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS GCA 72 bp | TACTTTACAATATGCAGTGTGATGTCCACCATCCTTTaGTTCCACCCCAATTGTGTAGCTATCTCTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: YFTICSVMSTIL*FHPNCVAISLF Trigger: GAAGAGAGAGATAGCTACACAATTGGGGTGGAAGCAAAGGATGGTGGACATCACACTGCATATTGTAAAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CAA 90 bp | TCATCACATAGAAGATCTTGTGGTGCAGCATTTTCAGCCTTTATATaGAGAAATTTAAACTCGGTGTTTGAGGAATGTGAGGCAGCACAC | + |
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Preference number: 6 (lower is better) Translates to: SSHRRSCGAAFSAFI*RNLNSVFEECEAAH Trigger: GTGTGCTGCCTCACATTCCTCAAACACCGAGTTTAAATTTCTCAATATAAAGGCTGAAAATGCTGCACCACAAGATCTTCTATGTGATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS TCA 72 bp | TCTGAAATATCTATCTGTACTTTACAATATGCAGTGTaGTGTCCACCATCCTTTGCTTCCACCCCAATTGTG | + |
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Preference number: 6 (lower is better) Translates to: SEISICTLQYAV*CPPSFASTPIV Trigger: CACAATTGGGGTGGAAGCAAAGGATGGTGGACATCACACTGCATATTGTAAAGTACAGATAGATATTTCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000576222.2 ENST00000618934.1 |
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| CDS CAA 72 bp | GGAAGGAAAGGTTTGAAGAAACTCACCTTTTGCAAATaGCCTGAATTAGAAGGCATTTCTGGATTGTCATTA | + |
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Preference number: 6 (lower is better) Translates to: GRKGLKKLTFCK*PELEGISGLSL Trigger: TAATGACAATCCAGAAATGCCTTCTAATTCAGGCAATTTGCAAAAGGTGAGTTTCTTCAAACCTTTCCTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618934.1 |
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| CDS TCA 72 bp | GAAAGGTTTGAAGAAACTCACCTTTTGCAAATTGCCTaGATTAGAAGGCATTTCTGGATTGTCATTACTTTC | + |
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Preference number: 6 (lower is better) Translates to: ERFEETHLLQIA*IRRHFWIVITF Trigger: GAAAGTAATGACAATCCAGAAATGCCTTCTAATTCAGGCAATTTGCAAAAGGTGAGTTTCTTCAAACCTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618934.1 |
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