Pregenerated sensors for PCDHB9 (Homo sapiens)
Ensembl gene IDs: ENSG00000177839Ensembl transcript IDs: ENST00000316105.7, ENST00000623266.1, ENST00000624909.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTTTGTCTATAATAGGCCCAAATGGATTAAGTCAAGGAATGTCGTaGAGGAAAAGGCTAGACACTACCAATAACACTCTAATAGCTGAA | + |
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Preference number: 1 (lower is better) Translates to: ILSIIGPNGLSQGMS*RKRLDTTNNTLIAE Trigger: TTCAGCTATTAGAGTGTTATTGGTAGTGTCTAGCCTTTTCCTCCACGACATTCCTTGACTTAATCCATTTGGGCCTATTATAGACAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| 3UTR-3UTR CCA 90 bp | CTGGAGTACAATGGTGCAATCTCGGCTCAAAGCAACTTCCACCTCCTGGGTTCAAGTCAAGGAATGTCGTaGAGGAAAAGGCTAGACACT | + |
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Preference number: 2 (lower is better) Translates to: LEYNGAISAQSNFHLLGSSQGMS*RKRLDT Trigger: AGTGTCTAGCCTTTTCCTCCACGACATTCCTTGACT...TGAACCCAGGAGGTGGAAGTTGCTTTGAGCCGAGATTGCACCATTGTACTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| 3UTR-3UTR TCA 90 bp | TTTTTGGTTTCCAGACTAAAGCCCATTTACACACGCTTAATATCTTGCAGTGGTAGCAATTTGGGAGGCTaGGTGGGGTGGATCACGAGG | + |
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Preference number: 2 (lower is better) Translates to: FLVSRLKPIYTRLISCSGSNLGG*VGWITR Trigger: CCTCGTGATCCACCCCACTCAGCCTCCCAAATTGCT...ACCACTGCAAGATATTAAGCGTGTGTAAATGGGCTTTAGTCTGGAAACCAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| 3UTR CCA 72 bp | ATAATAGGCCCAAATGGATTAAGTCAAGGAATGTCGTaGAGGAAAAGGCTAGACACTACCAATAACACTCTA | + |
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Preference number: 3 (lower is better) Translates to: IIGPNGLSQGMS*RKRLDTTNNTL Trigger: TAGAGTGTTATTGGTAGTGTCTAGCCTTTTCCTCCACGACATTCCTTGACTTAATCCATTTGGGCCTATTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| 3UTR-3UTR CAA 90 bp | TTTTTGGTTTCCAGACTAAAGCCCATTTACACACGCTTAATATCTTGCAGTGGTAAAATAGTACCTTCTTaGTGGTGGGCATACACAATT | + |
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Preference number: 3 (lower is better) Translates to: FLVSRLKPIYTRLISCSGKIVPS*WWAYTI Trigger: AATTGTGTATGCCCACCACAAAGAAGGTACTATTTT...ACCACTGCAAGATATTAAGCGTGTGTAAATGGGCTTTAGTCTGGAAACCAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | CTGGAGTACAATGGTGCAATCTCGGCTCAAAGCAACTTCCACCTCCTGGGTTCAAGCAATTTGGGAGGCTaGGTGGGGTGGATCACGAGG | + |
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Preference number: 4 (lower is better) Translates to: LEYNGAISAQSNFHLLGSSNLGG*VGWITR Trigger: CCTCGTGATCCACCCCACTCAGCCTCCCAAATTGCT...TGAACCCAGGAGGTGGAAGTTGCTTTGAGCCGAGATTGCACCATTGTACTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR GCA 90 bp | CTGGAGTACAATGGTGCAATCTCGGCTCAAAGCAACTTCCACCTCCTGGGTTCACCTGGTCTTCATAGCTaGTTCTTTCCTCAATGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LEYNGAISAQSNFHLLGSPGLHS*FFPQCQ Trigger: CTGACATTGAGGAAAGAAGCAGCTATGAAGACCAGG...TGAACCCAGGAGGTGGAAGTTGCTTTGAGCCGAGATTGCACCATTGTACTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | CTGGAGTACAATGGTGCAATCTCGGCTCAAAGCAACTTCCACCTCCTGGGTTCATGGAAAGTGATGATATaGTCAGTTCAGGAGGATTGT | + |
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Preference number: 4 (lower is better) Translates to: LEYNGAISAQSNFHLLGSWKVMI*SVQEDC Trigger: ACAATCCTCCTGAACTGATCATATCATCACTTTCCA...TGAACCCAGGAGGTGGAAGTTGCTTTGAGCCGAGATTGCACCATTGTACTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | TTTTTGGTTTCCAGACTAAAGCCCATTTACACACGCTTAATATCTTGCAGTGGTGAACTCGCCGGTCTCTaGACCTCCAGTCAGACACAC | + |
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Preference number: 4 (lower is better) Translates to: FLVSRLKPIYTRLISCSGELAGL*TSSQTH Trigger: GTGTGTCTGACTGGAGGTTCAGAGACCGGCGAGTTC...ACCACTGCAAGATATTAAGCGTGTGTAAATGGGCTTTAGTCTGGAAACCAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | AAAACAGTTGTAATGAACAAGGATGGCAAACCAATAAGAACACCGGTTTCAAAAAGGCGGAGGTTGCAGTaGGCTGAGATCGCGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: KTVVMNKDGKPIRTPVSKRRRLQ*AEIAPL Trigger: CAGTGGCGCGATCTCAGCTCACTGCAACCTCCGCCT...TTTTGAAACCGGTGTTCTTATTGGTTTGCCATCCTTGTTCATTACAACTGTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | CTGGAGTACAATGGTGCAATCTCGGCTCAAAGCAACTTCCACCTCCTGGGTTCAAGGTCCCCTCTTAATTaGAATTTAGCAGGATCTAAC | + |
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Preference number: 4 (lower is better) Translates to: LEYNGAISAQSNFHLLGSRSPLN*NLAGSN Trigger: GTTAGATCCTGCTAAATTTCAATTAAGAGGGGACCT...TGAACCCAGGAGGTGGAAGTTGCTTTGAGCCGAGATTGCACCATTGTACTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR GCA 90 bp | CTGGAGTACAATGGTGCAATCTCGGCTCAAAGCAACTTCCACCTCCTGGGTTCAATAGGGAACTATCAATaGCGGGAAACTAGAACTTTA | + |
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Preference number: 4 (lower is better) Translates to: LEYNGAISAQSNFHLLGSIGNYQ*RETRTL Trigger: TAAAGTTCTAGTTTCCCGGCATTGATAGTTCCCTAT...TGAACCCAGGAGGTGGAAGTTGCTTTGAGCCGAGATTGCACCATTGTACTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | TTTTTGGTTTCCAGACTAAAGCCCATTTACACACGCTTAATATCTTGCAGTGGTTCGGCTTCAAGAACTTaGACTCGCCGGTCTCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: FLVSRLKPIYTRLISCSGSASRT*TRRSLN Trigger: GTTCAGAGACCGGCGAGTTCAAGTTCTTGAAGCCGA...ACCACTGCAAGATATTAAGCGTGTGTAAATGGGCTTTAGTCTGGAAACCAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR CCA 90 bp | TTTTTGGTTTCCAGACTAAAGCCCATTTACACACGCTTAATATCTTGCAGTGGTAGCCTCCCGAGTAGCTaGGATTACAAGCATGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: FLVSRLKPIYTRLISCSGSLPSS*DYKHVP Trigger: TGGCACATGCTTGTAATCCCAGCTACTCGGGAGGCT...ACCACTGCAAGATATTAAGCGTGTGTAAATGGGCTTTAGTCTGGAAACCAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | AAAACAGTTGTAATGAACAAGGATGGCAAACCAATAAGAACACCGGTTTCAAAAACAGGAATGAGCCACTaGGCCCTGCCTCAAAGACCT | + |
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Preference number: 4 (lower is better) Translates to: KTVVMNKDGKPIRTPVSKTGMSH*ALPQRP Trigger: AGGTCTTTGAGGCAGGGCTCAGTGGCTCATTCCTGT...TTTTGAAACCGGTGTTCTTATTGGTTTGCCATCCTTGTTCATTACAACTGTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | AAAACAGTTGTAATGAACAAGGATGGCAAACCAATAAGAACACCGGTTTCAAAACTGGTCTCAAACTCGTaGCCTAAGGTGATCTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: KTVVMNKDGKPIRTPVSKLVSNS*PKVICP Trigger: CGGGCAGATCACCTTAGGTCACGAGTTTGAGACCAG...TTTTGAAACCGGTGTTCTTATTGGTTTGCCATCCTTGTTCATTACAACTGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR CCA 90 bp | AGTACCTTCTTTGTGGTGGGCATACACAATTTAGTTAGCCAACAAGAATATATTATTTGGGAGGCTGAGTaGGGTGGATCACGAGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: STFFVVGIHNLVSQQEYIIWEAE*GGSRGQ Trigger: TTGACCTCGTGATCCACCCCACTCAGCCTCCCAAAT...AATATATTCTTGTTGGCTAACTAAATTGTGTATGCCCACCACAAAGAAGGTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | AGTACCTTCTTTGTGGTGGGCATACACAATTTAGTTAGCCAACAAGAATATATTTTCTGCATTGACTCCTaGGTCTGCATCTCCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: STFFVVGIHNLVSQQEYIFCIDS*VCISCR Trigger: TCTGCAGGAGATGCAGACTCAGGAGTCAATGCAGAA...AATATATTCTTGTTGGCTAACTAAATTGTGTATGCCCACCACAAAGAAGGTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR CCA 90 bp | AGTACCTTCTTTGTGGTGGGCATACACAATTTAGTTAGCCAACAAGAATATATTCAGGCTGGAGTACAATaGTGCAATCTCGGCTCAAAG | + |
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Preference number: 4 (lower is better) Translates to: STFFVVGIHNLVSQQEYIQAGVQ*CNLGSK Trigger: CTTTGAGCCGAGATTGCACCATTGTACTCCAGCCTG...AATATATTCTTGTTGGCTAACTAAATTGTGTATGCCCACCACAAAGAAGGTACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | AGTACCTTCTTTGTGGTGGGCATACACAATTTAGTTAGCCAACAAGAATATATTGTGGGACATTGTCATTaGCATCCAAGACCACAATGC | + |
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Preference number: 4 (lower is better) Translates to: STFFVVGIHNLVSQQEYIVGHCH*HPRPQC Trigger: GCATTGTGGTCTTGGATGTCAATGACAATGTCCCAC...AATATATTCTTGTTGGCTAACTAAATTGTGTATGCCCACCACAAAGAAGGTACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR TCA 90 bp | AGTACCTTCTTTGTGGTGGGCATACACAATTTAGTTAGCCAACAAGAATATATTAGGATACTTCTGCATTaGCTCCTGAGTCTGCATCTC | + |
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Preference number: 4 (lower is better) Translates to: STFFVVGIHNLVSQQEYIRILLH*LLSLHL Trigger: GAGATGCAGACTCAGGAGTCAATGCAGAAGTATCCT...AATATATTCTTGTTGGCTAACTAAATTGTGTATGCCCACCACAAAGAAGGTACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR GCA 90 bp | AAAACAGTTGTAATGAACAAGGATGGCAAACCAATAAGAACACCGGTTTCAAAACAGTCTCAATCACACTaGCCCAGCACAAATAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: KTVVMNKDGKPIRTPVSKQSQSH*PSTNSN Trigger: ATTGCTATTTGTGCTGGGGCAGTGTGATTGAGACTG...TTTTGAAACCGGTGTTCTTATTGGTTTGCCATCCTTGTTCATTACAACTGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR CCA 90 bp | AGTACCTTCTTTGTGGTGGGCATACACAATTTAGTTAGCCAACAAGAATATATTAGTCAAGGAATGTCGTaGAGGAAAAGGCTAGACACT | + |
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Preference number: 4 (lower is better) Translates to: STFFVVGIHNLVSQQEYISQGMS*RKRLDT Trigger: AGTGTCTAGCCTTTTCCTCCACGACATTCCTTGACT...AATATATTCTTGTTGGCTAACTAAATTGTGTATGCCCACCACAAAGAAGGTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR GCA 90 bp | AGTACCTTCTTTGTGGTGGGCATACACAATTTAGTTAGCCAACAAGAATATATTACACGCTTAATATCTTaGAGTGGTTTTTCTTCTAAG | + |
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Preference number: 4 (lower is better) Translates to: STFFVVGIHNLVSQQEYITRLIS*SGFSSK Trigger: CTTAGAAGAAAAACCACTGCAAGATATTAAGCGTGT...AATATATTCTTGTTGGCTAACTAAATTGTGTATGCCCACCACAAAGAAGGTACT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS GCA 90 bp | CCATTGCCTTTGTCTTGGAAAGCTGAACCCCCTGGTCTTCATAGCTaGTTCTTTCCTCAATGTCAGTCTCAATCACACTGCCCCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: PLPLSWKAEPPGLHS*FFPQCQSQSHCPST Trigger: TGTGCTGGGGCAGTGTGATTGAGACTGACATTGAGGAAAGAAGCAGCTATGAAGACCAGGGGGTTCAGCTTTCCAAGACAAAGGCAATGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000624909.1 |
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| CDS GCA 90 bp | AGTGCACCTTTGTCTTGGAAAGCTGAACCCCCTGGTCTTCATAGCTaGTTCTTTCCTCAATGTCAGTCTCAATCACACTGCCCCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: SAPLSWKAEPPGLHS*FFPQCQSQSHCPST Trigger: TGTGCTGGGGCAGTGTGATTGAGACTGACATTGAGGAAAGAAGCAGCTATGAAGACCAGGGGGTTCAGCTTTCCAAGACAAAGGTGCACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000623266.1 |
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| CDS GCA 90 bp | GGTCTTCATAGCTGCTTCTTTCCTCAATGTCAGTCTCAATCACACTaGCCCAGCACAAATAGCAATCGCAAACCCAGACTTATGTGTACC | + |
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Preference number: 5 (lower is better) Translates to: GLHSCFFPQCQSQSH*PSTNSNRKPRLMCT Trigger: GGTACACATAAGTCTGGGTTTGCGATTGCTATTTGTGCTGGGGCAGTGTGATTGAGACTGACATTGAGGAAAGAAGCAGCTATGAAGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000316105.7 ENST00000623266.1 ENST00000624909.1 |
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| CDS-3UTR CAA 90 bp | CTGGAGTACAATGGTGCAATCTCGGCTCAAAGCAACTTCCACCTCCTGGGTTCAAAAATAGTACCTTCTTaGTGGTGGGCATACACAATT | + |
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Preference number: 5 (lower is better) Translates to: LEYNGAISAQSNFHLLGSKIVPS*WWAYTI Trigger: AATTGTGTATGCCCACCACAAAGAAGGTACTATTTT...TGAACCCAGGAGGTGGAAGTTGCTTTGAGCCGAGATTGCACCATTGTACTCCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS-3UTR CAA 90 bp | TTTTTGGTTTCCAGACTAAAGCCCATTTACACACGCTTAATATCTTGCAGTGGTTGTGGGACATTGTCATaGACATCCAAGACCACAATG | + |
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Preference number: 5 (lower is better) Translates to: FLVSRLKPIYTRLISCSGCGTLS*TSKTTM Trigger: CATTGTGGTCTTGGATGTCAATGACAATGTCCCACA...ACCACTGCAAGATATTAAGCGTGTGTAAATGGGCTTTAGTCTGGAAACCAAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000316105.7 |
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| CDS GCA 72 bp | TTGTCTTGGAAAGCTGAACCCCCTGGTCTTCATAGCTaGTTCTTTCCTCAATGTCAGTCTCAATCACACTGC | + |
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Preference number: 6 (lower is better) Translates to: LSWKAEPPGLHS*FFPQCQSQSHC Trigger: GCAGTGTGATTGAGACTGACATTGAGGAAAGAAGCAGCTATGAAGACCAGGGGGTTCAGCTTTCCAAGACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000316105.7 ENST00000623266.1 ENST00000624909.1 |
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