Pregenerated sensors for OR6K6 (Homo sapiens)

Ensembl gene IDs: ENSG00000180433

Ensembl transcript IDs: ENST00000641861.1

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGCGCATGCGGGAACATAGAGAAGAGGAACTCAGTCACCATTGTCTaGTTCCCACTGGCCGTCAACTGTGTCATCTGTGAACACAGAAAA	+
Preference number: 5 (lower is better) Translates to: CACGNIEKRNSVTIV*FPLAVNCVICEHRK Trigger: TTTTCTGTGTTCACAGATGACACAGTTGACGGCCAGTGGGAATCAGACAATGGTGACTGAGTTCCTCTTCTCTATGTTCCCGCATGCGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000641861.1
CDS TCA 72 bp	AGGCTACAATTTCCGCTGCATGGATGGCATCCACAATaGCCACTAGGAATGTATCTGTGCAGGCCAAGCTCA	+
Preference number: 6 (lower is better) Translates to: RLQFPLHGWHPQ*PLGMYLCRPSS Trigger: TGAGCTTGGCCTGCACAGATACATTCCTAGTGGTCATTGTGGATGCCATCCATGCAGCGGAAATTGTAGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000641861.1
CDS GCA 72 bp	AGAAGCAAGGGAATAAAGAATAAGAGGCCACCTCTGTaGGCATGCGGGAACATAGAGAAGAGGAACTCAGTC	+
Preference number: 6 (lower is better) Translates to: RSKGIKNKRPPL*ACGNIEKRNSV Trigger: GACTGAGTTCCTCTTCTCTATGTTCCCGCATGCGCACAGAGGTGGCCTCTTATTCTTTATTCCCTTGCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000641861.1
CDS CCA 72 bp	GCAATGACCAGGAAGGAGGCTACAATTTCCGCTGCATaGATGGCATCCACAATGACCACTAGGAATGTATCT	+
Preference number: 6 (lower is better) Translates to: AMTRKEATISAA*MASTMTTRNVS Trigger: AGATACATTCCTAGTGGTCATTGTGGATGCCATCCATGCAGCGGAAATTGTAGCCTCCTTCCTGGTCATTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000641861.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu