Pregenerated sensors for OR1J2 (Homo sapiens)

Ensembl gene IDs: ENSG00000197233

Ensembl transcript IDs: ENST00000335302.5

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CACAGAAAGACAGCCGGGTCAGGAGAAGGGTGTGAGAGAGGGAGCTaGCACAAGACAGAATCCAAGATACAGCCACTAAGAAGACACAGA	+
Preference number: 5 (lower is better) Translates to: HRKTAGSGEGCERGS*HKTESKIQPLRRHR Trigger: TCTGTGTCTTCTTAGTGGCTGTATCTTGGATTCTGTCTTGTGCCAGCTCCCTCTCTCACACCCTTCTCCTGACCCGGCTGTCTTTCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000335302.5
CDS CCA 72 bp	TGTGGATCCCTTTGGTTGAAGGGACCCTCAGGATGGTaGCCCCAATGTAGCCATATGATACCAGGATACACA	+
Preference number: 6 (lower is better) Translates to: CGSLWLKGPSGW*PQCSHMIPGYT Trigger: TGTGTATCCTGGTATCATATGGCTACATTGGGGCCACCATCCTGAGGGTCCCTTCAACCAAAGGGATCCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000335302.5
CDS CCA 72 bp	CTTTGTGGATCCCTTTGGTTGAAGGGACCCTCAGGATaGTGGCCCCAATGTAGCCATATGATACCAGGATAC	+
Preference number: 6 (lower is better) Translates to: LCGSLWLKGPSG*WPQCSHMIPGY Trigger: GTATCCTGGTATCATATGGCTACATTGGGGCCACCATCCTGAGGGTCCCTTCAACCAAAGGGATCCACAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000335302.5
CDS CAA 72 bp	GTGACCACCGTGTACATGAGAGCCACAATGACATCCTaGTCAATAGAACTGCTTACAGTCGGGAAAAGGTAC	+
Preference number: 6 (lower is better) Translates to: VTTVYMRATMTS*SIELLTVGKRY Trigger: GTACCTTTTCCCGACTGTAAGCAGTTCTATTGACAAGGATGTCATTGTGGCTCTCATGTACACGGTGGTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000335302.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu