Pregenerated sensors for OPRPN (Homo sapiens)
Ensembl gene IDs: ENSG00000171199Ensembl transcript IDs: ENST00000399575.7, ENST00000505023.1, ENST00000514338.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTGCGGGGGTTGCTGCTaGTATGGAGGTGGCAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: TLFSVLVRSGLVPSKSLQCGGCC*YGGGRL Trigger: GAGCCTGCCACCTCCATATCAGCAGCAACCCCCGCA...CTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | TCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATCTTGGCCTGTAGAGTaGAGGTGGTGGCAGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SNTLFSVLVRSGLVPSKSSWPVE*RWWQLA Trigger: GGCCAGCTGCCACCACCTCCACTCTACAGGCCAAGA...TGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | TGCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAAGGAGGTGGTGGCAGCTaGCCAGGTAGATATGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: CSNTLFSVLVRSGLVPSKGGGGS*PGRYGL Trigger: AAGACCATATCTACCTGGCCAGCTGCCACCACCTCC...TTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | TATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTAAGGTGGGGGACTTGGTaGAACCCATCTTGGCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: YLVCWLDQGWFHQNHCSLRWGTW*NPSWPV Trigger: TACAGGCCAAGATGGGTTCCACCAAGTCCCCCACCT...TAAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | ACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTCGAGAGAAAGAAGATaGTGGAACTCGCCCTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: TLFSVLVRSGLVPSKSLQSRERR*WNSPWD Trigger: GTCCCAGGGCGAGTTCCACCATCTTCTTTCTCTCGA...CTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | CAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATGGGTTGCTGCTGATATaGAGGTGGCAGGCTCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: QILYLVCWLDQGWFHQNHGLLLI*RWQALV Trigger: CACCAGAGCCTGCCACCTCCATATCAGCAGCAACCC...ATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR TCA 90 bp | CTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTCTTGGACAGTGGCATTaGGCAATACTGTGTGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: LYLVCWLDQGWFHQNHCSLGQWH*AILCED Trigger: GTCCTCACACAGTATTGCTCAATGCCACTGTCCAAG...ACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | CAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGGTGGAACCCATCTTaGCCTGTAGAGTGGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QILYLVCWLDQGWFHQNHWWNPS*PVEWRW Trigger: CCACCTCCACTCTACAGGCCAAGATGGGTTCCACCA...ATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | TGCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAACTGCTGATATGGAGGTaGCAGGCTCTGGTGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: CSNTLFSVLVRSGLVPSKLLIWR*QALVLK Trigger: CTTCAACACCAGAGCCTGCCACCTCCATATCAGCAG...TTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR TCA 90 bp | CTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTGTATCTGCGGTGGTaGTGTTTATTTGGGGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LYLVCWLDQGWFHQNHCSLYLRW*CLFGAQ Trigger: CTGAGCCCCAAATAAACATCACCACCGCAGATACAA...ACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | CTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTAGAGAAAGAAGATGGTaGAACTCGCCCTGGGACAAA | + |
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Preference number: 4 (lower is better) Translates to: LYLVCWLDQGWFHQNHCSRERRW*NSPWDK Trigger: TTTGTCCCAGGGCGAGTTCCACCATCTTCTTTCTCT...ACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR TCA 90 bp | TTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTACTGGGTGTGAAACATaGAATAAGAGCCAACAGGCC | + |
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Preference number: 4 (lower is better) Translates to: LFSVLVRSGLVPSKSLQFTGCET*NKSQQA Trigger: GGCCTGTTGGCTCTTATTTCATGTTTCACACCCAGT...AAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR TCA 90 bp | TTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTGTACTGTTGAGGAGCTaGTCGTCATTGTGGGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: LFSVLVRSGLVPSKSLQFVLLRS*SSLWVL Trigger: CAAAACCCACAATGACGATCAGCTCCTCAACAGTAC...AAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR TCA 90 bp | TATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTATTGAGCAATACTGTGTaGGGACGGTTGGCGAGAATT | + |
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Preference number: 4 (lower is better) Translates to: YLVCWLDQGWFHQNHCSLLSNTV*GRLARI Trigger: AATTCTCGCCAACCGTCCTCACACAGTATTGCTCAA...TAAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR TCA 90 bp | TATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTACTTCTGGAGAATCTTTaGCTCTCACTGGGTGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: YLVCWLDQGWFHQNHCSLLLENL*LSLGVK Trigger: TTTCACACCCAGTGAGAGTCAAAGATTCTCCAGAAG...TAAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | CTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTGTGGTGATGTTTATTTaGGGCTCAGGGTTAGAGATA | + |
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Preference number: 4 (lower is better) Translates to: LYLVCWLDQGWFHQNHCSVVMFI*GSGLEI Trigger: TATCTCTAACCCTGAGCCCCAAATAAACATCACCAC...ACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR TCA 90 bp | CAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATAGAGATAGGTACTGTTaGGGAGCTGATCGTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: QILYLVCWLDQGWFHQNHRDRYC*GADRHC Trigger: ACAATGACGATCAGCTCCTCAACAGTACCTATCTCT...ATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | TGCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATTGGAAGTCGTAACTTaGACAGTGGCATTGAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: CSNTLFSVLVRSGLVPSKLEVVT*TVALSN Trigger: ATTGCTCAATGCCACTGTCCAAGTTACGACTTCCAA...TTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR TCA 90 bp | GCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCGGTTGGCGAGAATTTaGGTAGTATTTTCAGTAGAT | + |
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Preference number: 4 (lower is better) Translates to: AQILYLVCWLDQGWFHQNRLARI*VVFSVD Trigger: ATCTACTGAAAATACTACTCAAATTCTCGCCAACCG...ATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR GCA 90 bp | GCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATGGTGATTGTTGTATCTaGGGTGGTGATGTTTATTTG | + |
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Preference number: 4 (lower is better) Translates to: AQILYLVCWLDQGWFHQNGDCCI*GGDVYL Trigger: CAAATAAACATCACCACCGCAGATACAACAATCACC...ATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | ACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGGATAGAATGACTGCTTaGCTAAATCGAGAGAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: TLFSVLVRSGLVPSKSLQDRMTA*LNREKE Trigger: TTCTTTCTCTCGATTTAGCCAAGCAGTCATTCTATC...CTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | TGCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATGGTTAGATCAGGGTTaGTTCCATCAAAATCATTGC | + |
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Preference number: 4 (lower is better) Translates to: CSNTLFSVLVRSGLVPSKWLDQG*FHQNHC Trigger: GCAATGATTTTGATGGAACCAACCCTGATCTAACCA...TTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR GCA 90 bp | TATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTAATACTTTATTTAGTGTaGTGGTTAGATCAGGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: YLVCWLDQGWFHQNHCSLILYLV*WLDQGW Trigger: CCAACCCTGATCTAACCAGCACACTAAATAAAGTAT...TAAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CCA 90 bp | TATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTACTGCTTAATATAGTTTaGTTGGAAGTCGTAACTTGG | + |
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Preference number: 4 (lower is better) Translates to: YLVCWLDQGWFHQNHCSLLLNIV*LEVVTW Trigger: CCAAGTTACGACTTCCAACCAAACTATATTAAGCAG...TAAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | ACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGAGGGAGGTGGGGGACTaGGTGGAACCCATCTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: TLFSVLVRSGLVPSKSLQREVGD*VEPILA Trigger: GGCCAAGATGGGTTCCACCAAGTCCCCCACCTCCCT...CTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | CTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTGGAAGTGCTGGTGGTaGCTGTTGCAGTGGTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: LYLVCWLDQGWFHQNHCSWKCWW*LLQWWG Trigger: CCCCCACCACTGCAACAGCAACCACCAGCACTTCCA...ACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | TCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGGTGGAACCCATCTaGGCCTGTAGAGTGGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: SNTLFSVLVRSGLVPSKSLVEPI*ACRVEV Trigger: CACCTCCACTCTACAGGCCAAGATGGGTTCCACCAA...TGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | CTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTGTGGGAAATGTAGGTTaGGATAACCCGGAAAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: LYLVCWLDQGWFHQNHCSVGNVG*DNPERV Trigger: GACTCTTTCCGGGTTATCCAAACCTACATTTCCCAC...ACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | ACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGCGGAAAGAGTCGAGGTaGTCTAATAGATTCCAATGG | + |
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Preference number: 5 (lower is better) Translates to: TLFSVLVRSGLVPSKSLQRKESR*SNRFQW Trigger: CCATTGGAATCTATTAGACAACCTCGACTCTTTCCG...CTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | TATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTAGGTGGTGATGTTTATTaGGGGCTCAGGGTTAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: YLVCWLDQGWFHQNHCSLGGDVY*GLRVRD Trigger: ATCTCTAACCCTGAGCCCCAAATAAACATCACCACC...TAAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | TGCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAAGTTGGAAGTCGTAACTaGGACAGTGGCATTGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: CSNTLFSVLVRSGLVPSKVGSRN*DSGIEQ Trigger: TTGCTCAATGCCACTGTCCAAGTTACGACTTCCAAC...TTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | TGCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCTTCTGGAGAATCTTaGACTCTCACTGGGTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: CSNTLFSVLVRSGLVPSKSSGES*TLTGCE Trigger: TTCACACCCAGTGAGAGTCAAAGATTCTCCAGAAGA...TTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | TGCTCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAAACGGTTGGCGAGAATTaGAGTAGTATTTTCAGTAGA | + |
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Preference number: 5 (lower is better) Translates to: CSNTLFSVLVRSGLVPSKTVGEN*SSIFSR Trigger: TCTACTGAAAATACTACTCAAATTCTCGCCAACCGT...TTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGAGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | TCAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCACTGGTTAGATCAGGGTaGGTTCCATCAAAATCATTG | + |
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Preference number: 5 (lower is better) Translates to: SNTLFSVLVRSGLVPSKSLVRSG*VPSKSL Trigger: CAATGATTTTGATGGAACCAACCCTGATCTAACCAG...TGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | TTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCAGTTTCTTAATATAGTTTGGTaGGAAGTCGTAACTTGGACA | + |
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Preference number: 5 (lower is better) Translates to: LFSVLVRSGLVPSKSLQFLNIVW*EVVTWT Trigger: TGTCCAAGTTACGACTTCCAACCAAACTATATTAAG...AAACTGCAATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS-3UTR CAA 90 bp | CAAATACTTTATTTAGTGTGCTGGTTAGATCAGGGTTGGTTCCATCAAAATCATTGCTTAATCTTACTCTaGCCAGATACTCAATTTAGG | + |
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Preference number: 5 (lower is better) Translates to: QILYLVCWLDQGWFHQNHCLILL*PDTQFR Trigger: CCTAAATTGAGTATCTGGCAAGAGTAAGATTAAGCA...ATGATTTTGATGGAACCAACCCTGATCTAACCAGCACACTAAATAAAGTATTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS CCA 72 bp | AATGACTGCTTGGCTAAATCGAGAGAAAGAAGATGGTaGAACTCGCCCTGGGACAAAGGGAAGAGAAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: NDCLAKSRERRW*NSPWDKGKRKW Trigger: CCACTTTCTCTTCCCTTTGTCCCAGGGCGAGTTCCACCATCTTCTTTCTCTCGATTTAGCCAAGCAGTCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000399575.7 ENST00000505023.1 ENST00000514338.1 |
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| CDS CAA 72 bp | ATTGAGCAATACTGTGTGAGGACGGTTGGCGAGAATTaGAGTAGTATTTTCAGTAGATGCTGCGGGGGTTGC | + |
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Preference number: 6 (lower is better) Translates to: IEQYCVRTVGEN*SSIFSRCCGGC Trigger: GCAACCCCCGCAGCATCTACTGAAAATACTACTCAAATTCTCGCCAACCGTCCTCACACAGTATTGCTCAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS TCA 72 bp | AGCTGGCCAGGTAGATATGGTCTTCTGGAGAATCTTTaGCTCTCACTGGGTGTGAAACATGAAATAAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: SWPGRYGLLENL*LSLGVKHEIRA Trigger: GGCTCTTATTTCATGTTTCACACCCAGTGAGAGTCAAAGATTCTCCAGAAGACCATATCTACCTGGCCAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS CCA 72 bp | CAAAAACTTTTAAAGGCTGGGCTGCTTAATATAGTTTaGTTGGAAGTCGTAACTTGGACAGTGGCATTGAGC | + |
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Preference number: 6 (lower is better) Translates to: QKLLKAGLLNIV*LEVVTWTVALS Trigger: GCTCAATGCCACTGTCCAAGTTACGACTTCCAACCAAACTATATTAAGCAGCCCAGCCTTTAAAAGTTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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| CDS CAA 72 bp | AAACTTTTAAAGGCTGGGCTGCTTAATATAGTTTGGTaGGAAGTCGTAACTTGGACAGTGGCATTGAGCAAT | + |
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Preference number: 6 (lower is better) Translates to: KLLKAGLLNIVW*EVVTWTVALSN Trigger: ATTGCTCAATGCCACTGTCCAAGTTACGACTTCCAACCAAACTATATTAAGCAGCCCAGCCTTTAAAAGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399575.7 |
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