Pregenerated sensors for OOSP4A (Homo sapiens)

Ensembl gene IDs: ENSG00000285010

Ensembl transcript IDs: ENST00000643613.1, ENST00000645590.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTTGGACGGATTTCCAAGTCTTCAAGTTCATGTGATAGTGAGCGGTaGTGTCCCACTGACCTTCTGCATTCACGACGGCTATCATTCTCT	+
Preference number: 5 (lower is better) Translates to: LGRISKSSSSCDSER*CPTDLLHSRRLSFS Trigger: AGAGAATGATAGCCGTCGTGAATGCAGAAGGTCAGTGGGACAGCACCGCTCACTATCACATGAACTTGAAGACTTGGAAATCCGTCCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1
CDS GCA 90 bp	CTTCAAGTTCATGTGATAGTGAGCGGTGCTGTCCCACTGACCTTCTaGATTCACGACGGCTATCATTCTCTCTCCCTCTCATTACTAAGA	+
Preference number: 5 (lower is better) Translates to: LQVHVIVSGAVPLTF*IHDGYHSLSLSLLR Trigger: TCTTAGTAATGAGAGGGAGAGAGAATGATAGCCGTCGTGAATGCAGAAGGTCAGTGGGACAGCACCGCTCACTATCACATGAACTTGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1
CDS CCA 90 bp	AAAGGTTGCAGGTCATTTAACAGCGGCGTTCGTCTAAGTTTGACCTaGAGCCAGGATTCAGAACAGGTTATAGACAAATCTTGGAGACCA	+
Preference number: 5 (lower is better) Translates to: KGCRSFNSGVRLSLT*SQDSEQVIDKSWRP Trigger: TGGTCTCCAAGATTTGTCTATAACCTGTTCTGAATCCTGGCTCCAGGTCAAACTTAGACGAACGCCGCTGTTAAATGACCTGCAACCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1
CDS GCA 72 bp	CATGTGATAGTGAGCGGTGCTGTCCCACTGACCTTCTaGATTCACGACGGCTATCATTCTCTCTCCCTCTCA	+
Preference number: 6 (lower is better) Translates to: HVIVSGAVPLTF*IHDGYHSLSLS Trigger: TGAGAGGGAGAGAGAATGATAGCCGTCGTGAATGCAGAAGGTCAGTGGGACAGCACCGCTCACTATCACATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1
CDS GCA 72 bp	ATTTCCAAGTCTTCAAGTTCATGTGATAGTGAGCGGTaGTGTCCCACTGACCTTCTGCATTCACGACGGCTA	+
Preference number: 6 (lower is better) Translates to: ISKSSSSCDSER*CPTDLLHSRRL Trigger: TAGCCGTCGTGAATGCAGAAGGTCAGTGGGACAGCACCGCTCACTATCACATGAACTTGAAGACTTGGAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1
CDS CAA 72 bp	GGTTGCAGGTCATTTAACAGCGGCGTTCGTCTAAGTTaGACCTGGAGCCAGGATTCAGAACAGGTTATAGAC	+
Preference number: 6 (lower is better) Translates to: GCRSFNSGVRLS*TWSQDSEQVID Trigger: GTCTATAACCTGTTCTGAATCCTGGCTCCAGGTCAAACTTAGACGAACGCCGCTGTTAAATGACCTGCAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1
CDS GCA 72 bp	CAGCCAATTCCTAGAGAGAGTTCGTTTTGCAAAGGTTaGAGGTCATTTAACAGCGGCGTTCGTCTAAGTTTG	+
Preference number: 6 (lower is better) Translates to: QPIPRESSFCKG*RSFNSGVRLSL Trigger: CAAACTTAGACGAACGCCGCTGTTAAATGACCTGCAACCTTTGCAAAACGAACTCTCTCTAGGAATTGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1
CDS CCA 72 bp	AGGTCATTTAACAGCGGCGTTCGTCTAAGTTTGACCTaGAGCCAGGATTCAGAACAGGTTATAGACAAATCT	+
Preference number: 6 (lower is better) Translates to: RSFNSGVRLSLT*SQDSEQVIDKS Trigger: AGATTTGTCTATAACCTGTTCTGAATCCTGGCTCCAGGTCAAACTTAGACGAACGCCGCTGTTAAATGACCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1
CDS CAA 72 bp	AGCTCAACAAGGGAACACTGTTCACATAGGACACTCTaGGACGGATTTCCAAGTCTTCAAGTTCATGTGATA	+
Preference number: 6 (lower is better) Translates to: SSTREHCSHRTL*DGFPSLQVHVI Trigger: TATCACATGAACTTGAAGACTTGGAAATCCGTCCAAGAGTGTCCTATGTGAACAGTGTTCCCTTGTTGAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643613.1 ENST00000645590.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu