Pregenerated sensors for NBPF20 (Homo sapiens)
Ensembl gene IDs: ENSG00000162825Ensembl transcript IDs: ENST00000369373.9, ENST00000392971.6
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR CAA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATTGGAAACTCACAGCATaGTCTCTGCAGTGTTCCCGG | + |
Preference number: 3 (lower is better) Translates to: RFPKYFFIISKVSLKGTDWKLTA*SLQCSR Trigger: CCGGGAACACTGCAGAGACAATGCTGTGAGTTTCCA...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000369373.9 ENST00000392971.6 |
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CDS-3UTR TCA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATCCAGCAGCTCCCTGCTaGGCCTGGGACCTGTTGCCT | + |
Preference number: 4 (lower is better) Translates to: RFPKYFFIISKVSLKGTDPAAPC*AWDLLP Trigger: AGGCAACAGGTCCCAGGCTCAGCAGGGAGCTGCTGG...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000369373.9 |
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CDS-3UTR TCA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATCCAGCAGCTCCCTGCTaGGCCTGGGGCATGATGGGT | + |
Preference number: 4 (lower is better) Translates to: RFPKYFFIISKVSLKGTDPAAPC*AWGMMG Trigger: ACCCATCATGCCCCAGGCTCAGCAGGGAGCTGCTGG...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000369373.9 ENST00000392971.6 |
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CDS-3UTR TCA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATCCATCAGCACGCCGTTaGGCCTGGGGCATGGTGGGT | + |
Preference number: 4 (lower is better) Translates to: RFPKYFFIISKVSLKGTDPSARR*AWGMVG Trigger: ACCCACCATGCCCCAGGCTCAACGGCGTGCTGATGG...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000369373.9 ENST00000392971.6 |
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CDS-3UTR TCA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATTGCCCGCAGATGGGCTaGGGTTGGAAACTCACAGCA | + |
Preference number: 4 (lower is better) Translates to: RFPKYFFIISKVSLKGTDCPQMG*GWKLTA Trigger: TGCTGTGAGTTTCCAACCTCAGCCCATCTGCGGGCA...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000369373.9 ENST00000392971.6 |
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CDS-3UTR GCA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATTCACAGCATTGTCTCTaGAGTGTTCCCGGCAAAACG | + |
Preference number: 4 (lower is better) Translates to: RFPKYFFIISKVSLKGTDSQHCL*SVPGKT Trigger: CGTTTTGCCGGGAACACTGCAGAGACAATGCTGTGA...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000369373.9 ENST00000392971.6 |
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CDS-3UTR TCA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATCCAAGTAACCAGTCCTaGTATCATAATGGTGATGGA | + |
Preference number: 4 (lower is better) Translates to: RFPKYFFIISKVSLKGTDPSNQS*YHNGDG Trigger: TCCATCACCATTATGATATCAGGACTGGTTACTTGG...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000369373.9 ENST00000392971.6 |
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CDS-3UTR TCA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATGGATATTTATACTCTTaGAAACCGCTTTCCCAAGTA | + |
Preference number: 4 (lower is better) Translates to: RFPKYFFIISKVSLKGTDGYLYS*KPLSQV Trigger: TACTTGGGAAAGCGGTTTTCAAGAGTATAAATATCC...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000369373.9 ENST00000392971.6 |
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CDS-3UTR CAA 90 bp | CGCTTTCCCAAGTACTTCTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATTTGCACTCTTCATATTaGTATTTCTTCTGCTGGTTG | + |
Preference number: 5 (lower is better) Translates to: RFPKYFFIISKVSLKGTDLHSSY*YFFCWL Trigger: CAACCAGCAGAAGAAATACAAATATGAAGAGTGCAA...ATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGAAGTACTTGGGAAAGCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000369373.9 ENST00000392971.6 |