Pregenerated sensors for MSN (Homo sapiens)
Ensembl gene IDs: ENSG00000147065Ensembl transcript IDs: ENST00000429601.1, ENST00000439474.5, ENST00000447323.1, ENST00000609205.5, ENST00000609672.5
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGACAGTGGTGGTTATTGACTCCAACTCCCCTGGCACCTGGTCCTaGGCACTCCTCAGCAGCAGCACCAGCAGCATCGGCACTAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LTVVVIDSNSPGTWS*ALLSSSTSSIGTSS Trigger: GCTGCTAGTGCCGATGCTGCTGGTGCTGCTGCTGAGGAGTGCCCAGGACCAGGTGCCAGGGGAGTTGGAGTCAATAACCACCACTGTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000429601.1 ENST00000439474.5 ENST00000609205.5 |
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| CDS TCA 90 bp | GCTTGGTTGTTTTGCATGGTCCACGAACACTGGCAGTTAAGGGACTaGTGGCTGGTTGAGCGGCGGGGCTGGAGGTGGCTGATGGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: AWLFCMVHEHWQLRD*WLVERRGWRWLMGG Trigger: ACCACCCATCAGCCACCTCCAGCCCCGCCGCTCAACCAGCCATCAGTCCCTTAACTGCCAGTGTTCGTGGACCATGCAAAACAACCAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000429601.1 ENST00000439474.5 ENST00000609205.5 |
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| CDS TCA 90 bp | GGAGAAACTGGCTTGGGGGTCAGTAGATCTGACAGTGGTGGTTATTaGCTCCAACTCCCCTGGCACCTGGTCCTGGGCACTCCTCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: GETGLGVSRSDSGGY*LQLPWHLVLGTPQQ Trigger: CTGCTGAGGAGTGCCCAGGACCAGGTGCCAGGGGAGTTGGAGTCAATAACCACCACTGTCAGATCTACTGACCCCCAAGCCAGTTTCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000429601.1 ENST00000439474.5 ENST00000609205.5 |
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| CDS TCA 90 bp | TCTTGGTTGTTTTGCATGGTCCACGAACACTGGCAGTTAAGGGACTaGTGGCTGGTTGAGCGGCGGGGCTGGAGGTGGCTGATGGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: SWLFCMVHEHWQLRD*WLVERRGWRWLMGG Trigger: ACCACCCATCAGCCACCTCCAGCCCCGCCGCTCAACCAGCCATCAGTCCCTTAACTGCCAGTGTTCGTGGACCATGCAAAACAACCAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447323.1 |
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| CDS TCA 90 bp | ATTTGGTTGTTTTGCATGGTCCACGAACACTGGCAGTTAAGGGACTaGTGGCTGGTTGAGCGGCGGGGCTGGAGGTGGCTGATGGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: IWLFCMVHEHWQLRD*WLVERRGWRWLMGG Trigger: ACCACCCATCAGCCACCTCCAGCCCCGCCGCTCAACCAGCCATCAGTCCCTTAACTGCCAGTGTTCGTGGACCATGCAAAACAACCAAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609672.5 |
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| CDS CCA 90 bp | GTATGCCACCAACATCCAGGATCAGTTTATTATCCAAGCCCTCCATaGAAAACTGTGAGCCTGCTTCTAGGCTGGCTGGGATCTACTGAC | + |
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Preference number: 5 (lower is better) Translates to: VCHQHPGSVYYPSPP*KTVSLLLGWLGSTD Trigger: GTCAGTAGATCCCAGCCAGCCTAGAAGCAGGCTCACAGTTTTCCATGGAGGGCTTGGATAATAAACTGATCCTGGATGTTGGTGGCATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439474.5 ENST00000609205.5 |
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| CDS CCA 90 bp | TCCCAGTCCAGACTAGTTGCTTGGGGTACTTCTCAGACAACCCAGTaGCTTGATTTGAAGTCATACCTGAGATGGTCCCTTCTCTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: SQSRLVAWGTSQTTQ*LDLKSYLRWSLLFL Trigger: GAGGAAGAGAAGGGACCATCTCAGGTATGACTTCAAATCAAGCCACTGGGTTGTCTGAGAAGTACCCCAAGCAACTAGTCTGGACTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447323.1 |
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| CDS TCA 90 bp | GTCCAGACTAGTTGCTTGGGGTACTTCTCAGACAACCCAGTGGCTTaGTTTGAAGTCATACCTGAGATGGTCCCTTCTCTTCCTCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: VQTSCLGYFSDNPVA*FEVIPEMVPSLPLG Trigger: ACCAAGAGGAAGAGAAGGGACCATCTCAGGTATGACTTCAAATCAAGCCACTGGGTTGTCTGAGAAGTACCCCAAGCAACTAGTCTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447323.1 |
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| CDS CCA 90 bp | AGGTTCAAGCAATTCTTGTGCCTCAGTCTCCTGAGTAGCTGGGACTaGAAATTTATAGTTCTAAATGCTGGAAAGGCCCTCATGGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: RFKQFLCLSLLSSWD*KFIVLNAGKALMVL Trigger: CAGCACCATGAGGGCCTTTCCAGCATTTAGAACTATAAATTTCCAGTCCCAGCTACTCAGGAGACTGAGGCACAAGAATTGCTTGAACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609205.5 |
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| CDS CCA 90 bp | CCTCTCAGGTTCAAGCAATTCTTGTGCCTCAGTCTCCTGAGTAGCTaGGACTGGAAATTTATAGTTCTAAATGCTGGAAAGGCCCTCATG | + |
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Preference number: 5 (lower is better) Translates to: PLRFKQFLCLSLLSS*DWKFIVLNAGKALM Trigger: CATGAGGGCCTTTCCAGCATTTAGAACTATAAATTTCCAGTCCCAGCTACTCAGGAGACTGAGGCACAAGAATTGCTTGAACCTGAGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609205.5 |
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| CDS GCA 72 bp | GAGGTGGCTGATGGGTGGTGTGGCCAGCCTTGCTGCTaGCCCCGGAGCTCATGGCTGCCCCTGCATGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: EVADGWCGQPCC*PRSSWLPLHGE Trigger: CTCTCCATGCAGGGGCAGCCATGAGCTCCGGGGGCAGCAGCAAGGCTGGCCACACCACCCATCAGCCACCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000429601.1 ENST00000439474.5 ENST00000447323.1 ENST00000609205.5 ENST00000609672.5 |
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| CDS TCA 72 bp | CCACGAACACTGGCAGTTAAGGGACTGATGGCTGGTTaGGCGGCGGGGCTGGAGGTGGCTGATGGGTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: PRTLAVKGLMAG*AAGLEVADGWC Trigger: ACACCACCCATCAGCCACCTCCAGCCCCGCCGCTCAACCAGCCATCAGTCCCTTAACTGCCAGTGTTCGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000429601.1 ENST00000439474.5 ENST00000447323.1 ENST00000609205.5 ENST00000609672.5 |
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| CDS TCA 72 bp | GGCTTGGGGGTCAGTAGATCTGACAGTGGTGGTTATTaGCTCCAACTCCCCTGGCACCTGGTCCTGGGCACT | + |
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Preference number: 6 (lower is better) Translates to: GLGVSRSDSGGY*LQLPWHLVLGT Trigger: AGTGCCCAGGACCAGGTGCCAGGGGAGTTGGAGTCAATAACCACCACTGTCAGATCTACTGACCCCCAAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000429601.1 ENST00000439474.5 ENST00000609205.5 |
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| CDS CCA 72 bp | AGCCCTCCATGGAAAACTGTGAGCCTGCTTCTAGGCTaGCTGGGATCTACTGACTGGAGAAACTGGCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: SPPWKTVSLLLG*LGSTDWRNWLG Trigger: CCCAAGCCAGTTTCTCCAGTCAGTAGATCCCAGCCAGCCTAGAAGCAGGCTCACAGTTTTCCATGGAGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439474.5 ENST00000609205.5 |
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| CDS GCA 72 bp | CTGCAACCTCTACCTCTCAGGTTCAAGCAATTCTTGTaGCTCAGTCTCCTGAGTAGCTGGGACTGGAAATTT | + |
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Preference number: 6 (lower is better) Translates to: LQPLPLRFKQFL*LSLLSSWDWKF Trigger: AAATTTCCAGTCCCAGCTACTCAGGAGACTGAGGCACAAGAATTGCTTGAACCTGAGAGGTAGAGGTTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609205.5 |
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| CDS CAA 90 bp | AGACTAGTTGCTTGGGGTACTTCTCAGACAACCCAGTGGCTTGATTaGAAGTCATACCTGAGATGGTCCCTTCTCTTCCTCTTGGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: RLVAWGTSQTTQWLD*KSYLRWSLLFLLVV Trigger: AACAACCAAGAGGAAGAGAAGGGACCATCTCAGGTATGACTTCAAATCAAGCCACTGGGTTGTCTGAGAAGTACCCCAAGCAACTAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447323.1 |
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| CDS TCA 72 bp | AGTTGCTTGGGGTACTTCTCAGACAACCCAGTGGCTTaGTTTGAAGTCATACCTGAGATGGTCCCTTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: SCLGYFSDNPVA*FEVIPEMVPSL Trigger: AAGAGAAGGGACCATCTCAGGTATGACTTCAAATCAAGCCACTGGGTTGTCTGAGAAGTACCCCAAGCAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447323.1 |
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| CDS CCA 72 bp | AGACTAGTTGCTTGGGGTACTTCTCAGACAACCCAGTaGCTTGATTTGAAGTCATACCTGAGATGGTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: RLVAWGTSQTTQ*LDLKSYLRWSL Trigger: AAGGGACCATCTCAGGTATGACTTCAAATCAAGCCACTGGGTTGTCTGAGAAGTACCCCAAGCAACTAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447323.1 |
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| CDS CAA 72 bp | ATGGATAGACAGAAGATGAATAAGAAAGTAGAGGATTaGAACAGCACCATAAACCAGCTAGACCAACAAATA | + |
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Preference number: 6 (lower is better) Translates to: MDRQKMNKKVED*NSTINQLDQQI Trigger: TATTTGTTGGTCTAGCTGGTTTATGGTGCTGTTCAAATCCTCTACTTTCTTATTCATCTTCTGTCTATCCAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609205.5 |
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| CDS TCA 72 bp | GCAGAATACATATTCTTCTCAAAACACACATTCTTCTaGAGTGCAAATGAAACATTCTCCAGAATAGACCAT | + |
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Preference number: 6 (lower is better) Translates to: AEYIFFSKHTFF*SANETFSRIDH Trigger: ATGGTCTATTCTGGAGAATGTTTCATTTGCACTTCAGAAGAATGTGTGTTTTGAGAAGAATATGTATTCTGC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609205.5 |
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