Pregenerated sensors for MSH4 (Homo sapiens)

Ensembl gene IDs: ENSG00000057468

Ensembl transcript IDs: ENST00000263187.4

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GAAGGCTGCTGCTGCTGCTGCTCCGGTCGCCCGCAGCTCCTGACGTaGCAGGACAGGTGGATGCAGAGACCACCTGGACCGAAGGGCGGC	+
Preference number: 5 (lower is better) Translates to: EGCCCCCSGRPQLLT*QDRWMQRPPGPKGG Trigger: GCCGCCCTTCGGTCCAGGTGGTCTCTGCATCCACCTGTCCTGGCACGTCAGGAGCTGCGGGCGACCGGAGCAGCAGCAGCAGCAGCCTTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS CCA 90 bp	TGCTGCTGCTCCGGTCGCCCGCAGCTCCTGACGTGCCAGGACAGGTaGATGCAGAGACCACCTGGACCGAAGGGCGGCTCTGTGGAGTCT	+
Preference number: 5 (lower is better) Translates to: CCCSGRPQLLTCQDR*MQRPPGPKGGSVES Trigger: AGACTCCACAGAGCCGCCCTTCGGTCCAGGTGGTCTCTGCATCCACCTGTCCTGGCACGTCAGGAGCTGCGGGCGACCGGAGCAGCAGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS CCA 90 bp	CCCGCAGCTCCTGACGTGCCAGGACAGGTGGATGCAGAGACCACCTaGACCGAAGGGCGGCTCTGTGGAGTCTCCTGGAGTCCGAAATTG	+
Preference number: 5 (lower is better) Translates to: PAAPDVPGQVDAETT*TEGRLCGVSWSPKL Trigger: CAATTTCGGACTCCAGGAGACTCCACAGAGCCGCCCTTCGGTCCAGGTGGTCTCTGCATCCACCTGTCCTGGCACGTCAGGAGCTGCGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS TCA 90 bp	CTGGAACTTGTTCAGTCCTGGGAAAATCTTCTTTGTACTTCTTCTTaGGGTTACTTAAATATATTCGTAAACTGTCTGGATCCAATTGAG	+
Preference number: 5 (lower is better) Translates to: LELVQSWENLLCTSS*GYLNIFVNCLDPIE Trigger: CTCAATTGGATCCAGACAGTTTACGAATATATTTAAGTAACCTCAAGAAGAAGTACAAAGAAGATTTTCCCAGGACTGAACAAGTTCCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS CCA 90 bp	ACTTCAAAATGCATGTTTTCTACATTAGGATACAGGGCATCAATATaGCATAGTTCCAGGAAATGTGTAGCAAACAGTGTAAATGCCTTT	+
Preference number: 5 (lower is better) Translates to: TSKCMFSTLGYRASI*HSSRKCVANSVNAF Trigger: AAAGGCATTTACACTGTTTGCTACACATTTCCTGGAACTATGCCATATTGATGCCCTGTATCCTAATGTAGAAAACATGCATTTTGAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS GCA 90 bp	TATCATTCCTGCTATGTCATCTACAATCTCTGTGTATGTTCTTCTTaGTATGTCAAGAAATTCATTTATGTTAGACCTCACTGCATAGCA	+
Preference number: 5 (lower is better) Translates to: YHSCYVIYNLCVCSS*YVKKFIYVRPHCIA Trigger: TGCTATGCAGTGAGGTCTAACATAAATGAATTTCTTGACATAGCAAGAAGAACATACACAGAGATTGTAGATGACATAGCAGGAATGATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS GCA 72 bp	TGCTGCTGCTGCTCCGGTCGCCCGCAGCTCCTGACGTaGCAGGACAGGTGGATGCAGAGACCACCTGGACCG	+
Preference number: 6 (lower is better) Translates to: CCCCSGRPQLLT*QDRWMQRPPGP Trigger: CGGTCCAGGTGGTCTCTGCATCCACCTGTCCTGGCACGTCAGGAGCTGCGGGCGACCGGAGCAGCAGCAGCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS CCA 72 bp	TCCGGTCGCCCGCAGCTCCTGACGTGCCAGGACAGGTaGATGCAGAGACCACCTGGACCGAAGGGCGGCTCT	+
Preference number: 6 (lower is better) Translates to: SGRPQLLTCQDR*MQRPPGPKGGS Trigger: AGAGCCGCCCTTCGGTCCAGGTGGTCTCTGCATCCACCTGTCCTGGCACGTCAGGAGCTGCGGGCGACCGGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS CCA 72 bp	GGATGCAGAGACCACCTGGACCGAAGGGCGGCTCTGTaGAGTCTCCTGGAGTCCGAAATTGTAGCGGGGACC	+
Preference number: 6 (lower is better) Translates to: GCRDHLDRRAAL*SLLESEIVAGT Trigger: GGTCCCCGCTACAATTTCGGACTCCAGGAGACTCCACAGAGCCGCCCTTCGGTCCAGGTGGTCTCTGCATCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS TCA 72 bp	AGTAATACTTGGACTGAACCTCCATTAGGACAGTGCTaGATTCTGCTATGCATAACTGTTCAATGTACTCTA	+
Preference number: 6 (lower is better) Translates to: SNTWTEPPLGQC*ILLCITVQCTL Trigger: TAGAGTACATTGAACAGTTATGCATAGCAGAATTCAGCACTGTCCTAATGGAGGTTCAGTCCAAGTATTACT 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS TCA 72 bp	GTACTCCTTTGGTTTTGCAAAATTTGTCTCGTAATTTaGGTTGTGATTTCCTTGGCATCCAAGACAATTGAT	+
Preference number: 6 (lower is better) Translates to: VLLWFCKICLVI*VVISLASKTID Trigger: ATCAATTGTCTTGGATGCCAAGGAAATCACAACTCAAATTACGAGACAAATTTTGCAAAACCAAAGGAGTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS GCA 72 bp	TGCTATGTCATCTACAATCTCTGTGTATGTTCTTCTTaGTATGTCAAGAAATTCATTTATGTTAGACCTCAC	+
Preference number: 6 (lower is better) Translates to: CYVIYNLCVCSS*YVKKFIYVRPH Trigger: GTGAGGTCTAACATAAATGAATTTCTTGACATAGCAAGAAGAACATACACAGAGATTGTAGATGACATAGCA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263187.4
CDS CAA 72 bp	ATTTTAAGTTTAGTGATCACCTTTGCATATGTTGTGTaGTCTGCAAACTGGGATAGTATAATTTGGGGGTTT	+
Preference number: 6 (lower is better) Translates to: ILSLVITFAYVV*SANWDSIIWGF Trigger: AAACCCCCAAATTATACTATCCCAGTTTGCAGACAACACAACATATGCAAAGGTGATCACTAAACTTAAAAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000263187.4

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